Wall clock time and date at job start Tue Mar 31 2020 17:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32214 * 120.50976 * 2 1 4 4 C 1.31910 * 121.13977 * 179.97438 * 3 2 1 5 5 N 1.31750 * 122.19869 * 359.97438 * 4 3 2 6 6 C 1.32741 * 120.87139 * 359.76955 * 5 4 3 7 7 O 1.35281 * 120.61999 * 180.26772 * 6 5 4 8 8 C 1.39767 * 120.50672 * 179.97438 * 2 1 3 9 9 C 1.47528 * 120.98403 * 359.97438 * 8 2 1 10 10 O 1.21594 * 119.99992 * 89.99839 * 9 8 2 11 11 N 1.34776 * 120.00218 * 270.00425 * 9 8 2 12 12 C 1.49212 * 126.05884 * 0.02562 * 11 9 8 13 13 C 1.50347 * 104.86485 * 172.91565 * 12 11 9 14 14 H 1.09000 * 110.05166 * 278.94039 * 13 12 11 15 15 C 1.51203 * 125.53723 * 144.31196 * 13 12 11 16 16 C 1.56402 * 101.50455 * 203.98298 * 15 13 12 17 17 C 1.55946 * 105.85352 * 25.03333 * 16 15 13 18 18 H 1.09003 * 110.49231 * 248.83729 * 17 16 15 19 19 N 1.46494 * 110.49342 * 126.31124 * 17 16 15 20 20 C 1.36930 * 120.00453 * 86.45080 * 19 17 16 21 21 H 1.08001 * 119.99901 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00570 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99808 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00385 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47014 * 90.00220 * 24 22 20 26 26 H 1.48500 * 109.47241 * 209.99467 * 24 22 20 27 27 H 1.48493 * 109.47136 * 330.00060 * 24 22 20 28 28 C 1.50286 * 104.15576 * 7.50669 * 17 16 15 29 29 H 1.08998 * 109.99752 * 79.59082 * 28 17 16 30 30 C 1.49696 * 126.05862 * 179.97438 * 11 9 8 31 31 H 1.09005 * 109.46893 * 270.01944 * 1 2 3 32 32 H 1.09001 * 109.47230 * 30.01177 * 1 2 3 33 33 H 1.09000 * 109.47373 * 150.02157 * 1 2 3 34 34 H 1.08004 * 118.89572 * 180.02562 * 4 3 2 35 35 H 0.96704 * 113.99578 * 270.22267 * 7 6 5 36 36 H 1.09008 * 110.35748 * 291.75776 * 12 11 9 37 37 H 1.08998 * 110.36333 * 53.95611 * 12 11 9 38 38 H 1.09006 * 111.06475 * 85.92580 * 15 13 12 39 39 H 1.09009 * 111.02719 * 322.01857 * 15 13 12 40 40 H 1.09002 * 110.18631 * 265.91372 * 16 15 13 41 41 H 1.09003 * 110.18534 * 144.15021 * 16 15 13 42 42 H 0.97003 * 119.99947 * 266.45167 * 19 17 16 43 43 H 0.97003 * 120.00034 * 180.02562 * 23 22 20 44 44 H 1.08995 * 110.84858 * 36.69008 * 30 11 9 45 45 H 1.09004 * 110.84742 * 273.07308 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1536 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6234 -1.1435 0.0067 7 8 4.3618 -2.2770 0.0132 8 6 2.2165 -1.2042 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2217 -3.0355 -1.0509 11 7 1.1911 -3.0920 1.1694 12 6 1.4800 -2.5587 2.5327 13 6 0.7686 -3.4933 3.4712 14 1 -0.2879 -3.2318 3.5294 15 6 1.2660 -3.9161 4.8350 16 6 0.5210 -5.2773 5.0306 17 6 0.2160 -5.8060 3.5955 18 1 -0.8554 -5.7753 3.3973 19 7 0.7278 -7.1688 3.4315 20 6 -0.0417 -8.2386 3.8034 21 1 -1.0262 -8.0778 4.2173 22 6 0.4435 -9.5299 3.6485 23 7 1.6431 -9.7260 3.1435 24 14 -0.6066 -10.9894 4.1552 25 1 -1.4338 -11.4280 3.0025 26 1 0.2725 -12.1058 4.5866 27 1 -1.4933 -10.5948 5.2791 28 6 0.9461 -4.8542 2.6903 29 1 2.0049 -5.1107 2.6557 30 6 0.4801 -4.3997 1.3285 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8899 -0.5140 33 1 -0.3634 -0.8902 -0.5135 34 1 4.0087 2.1048 0.0009 35 1 4.5803 -2.6090 -0.8684 36 1 2.5528 -2.5717 2.7254 37 1 1.0893 -1.5463 2.6346 38 1 0.9723 -3.1966 5.5995 39 1 2.3466 -4.0594 4.8302 40 1 -0.4078 -5.1223 5.5797 41 1 1.1593 -5.9822 5.5634 42 1 1.6119 -7.3133 3.0594 43 1 1.9820 -10.6284 3.0349 44 1 0.7890 -5.1054 0.5574 45 1 -0.6006 -4.2578 1.3156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026338936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:34 Heat of formation + Delta-G solvation = 8.909878 kcal Electronic energy + Delta-G solvation = -28978.288794 eV Core-core repulsion = 24997.251562 eV Total energy + Delta-G solvation = -3981.037232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78273 -40.43917 -38.64166 -38.07303 -35.40201 -34.58172 -33.44418 -32.36054 -30.96394 -29.81217 -28.87130 -28.53375 -25.79855 -25.22621 -23.36734 -23.19883 -22.83643 -20.29776 -19.96733 -19.27664 -19.20181 -18.44598 -17.50498 -17.00785 -16.78940 -16.39262 -15.62699 -15.18789 -14.91701 -14.77250 -14.57681 -14.00694 -13.88492 -13.80975 -13.60932 -13.27536 -13.04123 -12.92232 -12.88940 -12.45398 -12.31822 -11.98943 -11.65351 -11.60925 -11.46697 -11.07981 -10.84250 -10.79813 -10.76497 -10.52087 -10.21731 -10.17721 -10.11486 -9.83071 -9.78606 -9.76694 -9.61571 -8.94322 -8.78401 -6.99996 -5.79602 -3.09066 0.19756 0.47853 2.26829 2.67130 2.85924 3.23043 3.41791 3.47073 3.48710 3.53629 3.82231 3.94254 4.24849 4.52379 4.55769 4.71542 4.79784 4.87185 5.01954 5.09831 5.19328 5.24852 5.28706 5.38928 5.47545 5.49362 5.52972 5.67184 5.76872 5.80806 5.86204 5.89588 5.98192 6.06763 6.10156 6.26238 6.30727 6.39708 6.45059 6.58990 6.74577 6.94064 7.02264 7.31425 7.56230 7.67904 7.88610 8.38429 9.49860 10.06243 10.40585 11.42745 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002800 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.795220 B = 9996.157791 C =10247.645420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.226 3.774 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.541 5.541 6 C 0.400 3.600 7 O -0.468 6.468 8 C -0.242 4.242 9 C 0.593 3.407 10 O -0.531 6.531 11 N -0.609 5.609 12 C 0.122 3.878 13 C -0.129 4.129 14 H 0.083 0.917 15 C -0.097 4.097 16 C -0.143 4.143 17 C 0.198 3.802 18 H 0.055 0.945 19 N -0.720 5.720 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.117 4.117 29 H 0.083 0.917 30 C 0.130 3.870 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.206 0.794 35 H 0.416 0.584 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 23.237 -3.850 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 N -0.242 5.242 4 C 0.046 3.954 5 N -0.266 5.266 6 C 0.212 3.788 7 O -0.276 6.276 8 C -0.251 4.251 9 C 0.378 3.622 10 O -0.408 6.408 11 N -0.342 5.342 12 C 0.000 4.000 13 C -0.148 4.148 14 H 0.101 0.899 15 C -0.136 4.136 16 C -0.184 4.184 17 C 0.086 3.914 18 H 0.073 0.927 19 N -0.360 5.360 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.137 4.137 29 H 0.101 0.899 30 C 0.010 3.990 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.223 0.777 35 H 0.277 0.723 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.151 23.646 -3.864 23.987 hybrid contribution -0.266 -1.703 -0.220 1.737 sum 0.885 21.943 -4.084 22.337 Atomic orbital electron populations 1.20938 0.86918 1.05010 1.04401 1.21799 0.97769 0.85939 0.86496 1.68308 1.10217 1.29296 1.16381 1.24981 0.86242 0.96148 0.88015 1.68077 1.42615 0.98661 1.17266 1.19405 0.85511 0.86029 0.87854 1.84650 1.72395 1.35780 1.34798 1.21777 0.95098 0.96820 1.11403 1.17105 0.78688 0.83331 0.83093 1.90855 1.54837 1.64681 1.30381 1.49793 1.56967 1.22452 1.05009 1.21273 1.00476 0.96842 0.81400 1.22208 1.00843 0.95681 0.96101 0.89871 1.21795 1.00346 0.97596 0.93837 1.23811 0.99547 0.94809 1.00269 1.20070 0.96218 0.84714 0.90353 0.92737 1.42488 1.19014 0.99076 1.75464 1.19223 0.98039 0.85380 1.34584 0.91132 1.24749 0.96835 0.97435 1.01785 1.69661 1.17027 1.20659 1.50595 0.86212 0.79244 0.82753 0.78096 1.21706 1.21809 1.20761 1.22508 1.02537 0.95316 0.93317 0.89858 1.21587 0.96250 0.83025 0.98143 0.88828 0.88884 0.89564 0.77718 0.72264 0.91156 0.91572 0.92121 0.91568 0.92634 0.90654 0.78134 0.93468 0.89527 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.85 36.01 0.35 -0.59 16 2 C 0.23 2.36 6.86 -81.86 -0.56 1.79 16 3 N -0.53 -5.19 10.36 -10.52 -0.11 -5.30 16 4 C 0.33 2.96 12.27 -92.09 -1.13 1.83 16 5 N -0.54 -5.92 10.45 -14.32 -0.15 -6.07 16 6 C 0.40 4.71 7.85 -16.18 -0.13 4.59 16 7 O -0.47 -5.29 13.10 -17.54 -0.23 -5.52 16 8 C -0.24 -2.90 4.89 -104.56 -0.51 -3.41 16 9 C 0.59 8.32 5.57 -12.47 -0.07 8.25 16 10 O -0.53 -9.14 17.44 5.28 0.09 -9.05 16 11 N -0.61 -8.10 3.43 -172.78 -0.59 -8.69 16 12 C 0.12 1.39 6.39 -3.86 -0.02 1.37 16 13 C -0.13 -1.55 2.77 -90.16 -0.25 -1.80 16 14 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.10 -1.22 6.73 -25.81 -0.17 -1.40 16 16 C -0.14 -2.29 6.73 -23.33 -0.16 -2.45 16 17 C 0.20 3.60 3.39 -67.71 -0.23 3.37 16 18 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 19 N -0.72 -17.15 5.12 -53.21 -0.27 -17.43 16 20 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 24 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C -0.12 -1.79 2.41 -90.32 -0.22 -2.01 16 29 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 30 C 0.13 1.92 6.81 -3.30 -0.02 1.89 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.80 7.18 -51.93 -0.37 0.43 16 34 H 0.21 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.42 2.97 9.06 45.56 0.41 3.38 16 36 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.39 7.98 -51.93 -0.41 0.98 16 42 H 0.38 9.90 7.66 -40.82 -0.31 9.58 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.09 1.45 8.09 -51.93 -0.42 1.03 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -33.35 375.33 -8.98 -42.34 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.71 Total: 9.61 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -3.37 Total: 4.41 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.40 Total: -64.45 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.14 Total: -14.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.35 -8.98 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026338936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.247 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds