Wall clock time and date at job start Tue Mar 31 2020 17:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32214 * 120.50976 * 2 1 4 4 C 1.31910 * 121.13977 * 179.97438 * 3 2 1 5 5 N 1.31750 * 122.19869 * 359.97438 * 4 3 2 6 6 C 1.32741 * 120.87139 * 359.76955 * 5 4 3 7 7 O 1.35281 * 120.61999 * 180.26772 * 6 5 4 8 8 C 1.39767 * 120.50672 * 179.97438 * 2 1 3 9 9 C 1.47528 * 120.98403 * 359.97438 * 8 2 1 10 10 O 1.21594 * 119.99992 * 89.99839 * 9 8 2 11 11 N 1.34776 * 120.00218 * 270.00425 * 9 8 2 12 12 C 1.49212 * 126.05884 * 0.02562 * 11 9 8 13 13 C 1.50347 * 104.86485 * 172.91565 * 12 11 9 14 14 H 1.09000 * 110.05166 * 278.94039 * 13 12 11 15 15 C 1.51203 * 125.53723 * 144.31196 * 13 12 11 16 16 C 1.56402 * 101.50455 * 203.98298 * 15 13 12 17 17 C 1.55946 * 105.85352 * 25.03333 * 16 15 13 18 18 H 1.09003 * 110.49231 * 248.83729 * 17 16 15 19 19 N 1.46494 * 110.49342 * 126.31124 * 17 16 15 20 20 C 1.36930 * 120.00453 * 86.45080 * 19 17 16 21 21 H 1.08001 * 119.99901 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00570 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99808 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00385 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47014 * 90.00220 * 24 22 20 26 26 H 1.48500 * 109.47241 * 209.99467 * 24 22 20 27 27 H 1.48493 * 109.47136 * 330.00060 * 24 22 20 28 28 C 1.50286 * 104.15576 * 7.50669 * 17 16 15 29 29 H 1.08998 * 109.99752 * 79.59082 * 28 17 16 30 30 C 1.49696 * 126.05862 * 179.97438 * 11 9 8 31 31 H 1.09005 * 109.46893 * 270.01944 * 1 2 3 32 32 H 1.09001 * 109.47230 * 30.01177 * 1 2 3 33 33 H 1.09000 * 109.47373 * 150.02157 * 1 2 3 34 34 H 1.08004 * 118.89572 * 180.02562 * 4 3 2 35 35 H 0.96704 * 113.99578 * 270.22267 * 7 6 5 36 36 H 1.09008 * 110.35748 * 291.75776 * 12 11 9 37 37 H 1.08998 * 110.36333 * 53.95611 * 12 11 9 38 38 H 1.09006 * 111.06475 * 85.92580 * 15 13 12 39 39 H 1.09009 * 111.02719 * 322.01857 * 15 13 12 40 40 H 1.09002 * 110.18631 * 265.91372 * 16 15 13 41 41 H 1.09003 * 110.18534 * 144.15021 * 16 15 13 42 42 H 0.97003 * 119.99947 * 266.45167 * 19 17 16 43 43 H 0.97003 * 120.00034 * 180.02562 * 23 22 20 44 44 H 1.08995 * 110.84858 * 36.69008 * 30 11 9 45 45 H 1.09004 * 110.84742 * 273.07308 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4973 1.1536 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6234 -1.1435 0.0067 7 8 4.3618 -2.2770 0.0132 8 6 2.2165 -1.2042 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2217 -3.0355 -1.0509 11 7 1.1911 -3.0920 1.1694 12 6 1.4800 -2.5587 2.5327 13 6 0.7686 -3.4933 3.4712 14 1 -0.2879 -3.2318 3.5294 15 6 1.2660 -3.9161 4.8350 16 6 0.5210 -5.2773 5.0306 17 6 0.2160 -5.8060 3.5955 18 1 -0.8554 -5.7753 3.3973 19 7 0.7278 -7.1688 3.4315 20 6 -0.0417 -8.2386 3.8034 21 1 -1.0262 -8.0778 4.2173 22 6 0.4435 -9.5299 3.6485 23 7 1.6431 -9.7260 3.1435 24 14 -0.6066 -10.9894 4.1552 25 1 -1.4338 -11.4280 3.0025 26 1 0.2725 -12.1058 4.5866 27 1 -1.4933 -10.5948 5.2791 28 6 0.9461 -4.8542 2.6903 29 1 2.0049 -5.1107 2.6557 30 6 0.4801 -4.3997 1.3285 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8899 -0.5140 33 1 -0.3634 -0.8902 -0.5135 34 1 4.0087 2.1048 0.0009 35 1 4.5803 -2.6090 -0.8684 36 1 2.5528 -2.5717 2.7254 37 1 1.0893 -1.5463 2.6346 38 1 0.9723 -3.1966 5.5995 39 1 2.3466 -4.0594 4.8302 40 1 -0.4078 -5.1223 5.5797 41 1 1.1593 -5.9822 5.5634 42 1 1.6119 -7.3133 3.0594 43 1 1.9820 -10.6284 3.0349 44 1 0.7890 -5.1054 0.5574 45 1 -0.6006 -4.2578 1.3156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026338936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:33 Heat of formation + Delta-G solvation = -16.644163 kcal Electronic energy + Delta-G solvation = -28979.396900 eV Core-core repulsion = 24997.251562 eV Total energy + Delta-G solvation = -3982.145339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62598 -41.55351 -39.79266 -38.91007 -36.83970 -35.38915 -35.07916 -33.21753 -32.68756 -30.91619 -29.98042 -29.57784 -27.14876 -26.28310 -24.91045 -24.24316 -23.93348 -21.48496 -21.00301 -20.52441 -20.07412 -19.26547 -19.13822 -18.39883 -17.85355 -17.30670 -16.71783 -16.46999 -16.09896 -15.98615 -15.59567 -15.38723 -15.31074 -14.87538 -14.50414 -14.46392 -14.21786 -13.89188 -13.78658 -13.62267 -13.19699 -13.16859 -13.15825 -13.03298 -12.63426 -12.58898 -12.47780 -12.17271 -12.11420 -11.81065 -11.64009 -11.51396 -11.38337 -11.20538 -10.99586 -10.88909 -10.68704 -10.56143 -9.89884 -8.98179 -7.92585 -5.20711 -0.59218 -0.30739 1.20184 1.47856 1.49161 1.57262 1.61839 2.10103 2.45482 2.57344 2.83687 2.88666 3.09459 3.23579 3.41655 3.63841 3.74362 3.83385 4.02337 4.04035 4.15187 4.18264 4.25100 4.38055 4.47927 4.50872 4.54183 4.59756 4.61219 4.67687 4.74379 4.87017 4.87780 4.92936 4.98082 5.09873 5.14699 5.20074 5.35867 5.48805 5.50633 5.62031 5.64474 6.22444 6.25157 6.29565 6.79648 6.81661 7.35270 8.12123 8.33745 9.31073 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002800 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.795220 B = 9996.157791 C =10247.645420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.231 3.769 3 N -0.529 5.529 4 C 0.340 3.660 5 N -0.555 5.555 6 C 0.396 3.604 7 O -0.483 6.483 8 C -0.260 4.260 9 C 0.597 3.403 10 O -0.571 6.571 11 N -0.606 5.606 12 C 0.126 3.874 13 C -0.106 4.106 14 H 0.104 0.896 15 C -0.086 4.086 16 C -0.137 4.137 17 C 0.189 3.811 18 H 0.056 0.944 19 N -0.735 5.735 20 C -0.233 4.233 21 H 0.079 0.921 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.969 3.031 25 H -0.290 1.290 26 H -0.299 1.299 27 H -0.267 1.267 28 C -0.119 4.119 29 H 0.059 0.941 30 C 0.133 3.867 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.429 0.571 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 26.449 -2.645 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 N -0.245 5.245 4 C 0.054 3.946 5 N -0.281 5.281 6 C 0.208 3.792 7 O -0.294 6.294 8 C -0.269 4.269 9 C 0.384 3.616 10 O -0.451 6.451 11 N -0.338 5.338 12 C 0.005 3.995 13 C -0.125 4.125 14 H 0.122 0.878 15 C -0.124 4.124 16 C -0.178 4.178 17 C 0.080 3.920 18 H 0.074 0.926 19 N -0.374 5.374 20 C -0.365 4.365 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.799 3.201 25 H -0.217 1.217 26 H -0.226 1.226 27 H -0.191 1.191 28 C -0.139 4.139 29 H 0.078 0.922 30 C 0.012 3.988 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.261 0.739 35 H 0.293 0.707 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.202 0.798 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.093 26.923 -2.625 27.051 hybrid contribution 0.120 -2.592 -0.616 2.666 sum 0.027 24.331 -3.241 24.546 Atomic orbital electron populations 1.21013 0.85438 1.05043 1.05616 1.22136 0.98764 0.85461 0.85206 1.68440 1.10613 1.28628 1.16799 1.25831 0.86150 0.96913 0.85704 1.68180 1.42921 0.98762 1.18213 1.19534 0.85553 0.86412 0.87727 1.84597 1.72471 1.36123 1.36232 1.21597 0.95120 0.96131 1.14022 1.17376 0.77992 0.83782 0.82458 1.90826 1.56494 1.65993 1.31812 1.49778 1.56491 1.21710 1.05861 1.21367 1.00375 0.97983 0.79753 1.22176 1.02177 0.93111 0.95074 0.87821 1.21715 0.99612 0.96070 0.94988 1.23608 1.00197 0.96049 0.97917 1.20352 0.96294 0.82702 0.92661 0.92645 1.42712 1.18276 1.00959 1.75460 1.19632 0.98194 0.86249 1.32434 0.90313 1.25535 0.98137 1.00194 1.03190 1.69826 1.18945 1.20512 1.53044 0.85195 0.77650 0.79324 0.77955 1.21732 1.22618 1.19145 1.22259 1.00513 0.96911 0.94215 0.92205 1.21451 0.97131 0.83447 0.96787 0.86871 0.87337 0.90976 0.73878 0.70684 0.91614 0.88490 0.88729 0.92159 0.90988 0.93696 0.79839 0.94253 0.92585 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.85 71.24 0.70 -0.88 16 2 C 0.23 4.29 6.86 42.87 0.29 4.59 16 3 N -0.53 -8.90 10.36 -187.21 -1.94 -10.84 16 4 C 0.34 5.06 12.27 180.86 2.22 7.28 16 5 N -0.56 -11.15 10.45 -312.04 -3.26 -14.41 16 6 C 0.40 8.97 7.85 85.19 0.67 9.64 16 7 O -0.48 -10.95 13.10 -85.66 -1.12 -12.08 16 8 C -0.26 -5.93 4.89 -19.83 -0.10 -6.03 16 9 C 0.60 16.65 5.57 86.69 0.48 17.13 16 10 O -0.57 -20.23 17.44 -4.01 -0.07 -20.30 16 11 N -0.61 -15.65 3.43 -818.80 -2.80 -18.45 16 12 C 0.13 2.56 6.39 85.00 0.54 3.10 16 13 C -0.11 -2.26 2.77 -10.50 -0.03 -2.29 16 14 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 15 C -0.09 -1.91 6.73 31.19 0.21 -1.70 16 16 C -0.14 -4.20 6.73 32.80 0.22 -3.97 16 17 C 0.19 6.83 3.39 45.14 0.15 6.99 16 18 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 19 N -0.73 -36.01 5.12 -322.27 -1.65 -37.66 16 20 C -0.23 -12.63 9.97 84.03 0.84 -11.79 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 23 N -0.97 -59.89 13.06 21.65 0.28 -59.60 16 24 Si 0.97 46.01 29.55 68.60 2.03 48.03 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 C -0.12 -3.63 2.41 -10.60 -0.03 -3.66 16 29 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 30 C 0.13 3.94 6.81 85.09 0.58 4.52 16 31 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.24 7.18 -2.39 -0.02 1.22 16 34 H 0.25 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.43 6.38 9.06 -74.05 -0.67 5.71 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 1.66 7.98 -2.39 -0.02 1.64 16 42 H 0.37 20.01 7.66 -92.71 -0.71 19.30 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 45 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -74.78 375.33 -1.66 -76.44 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.35 Total: 29.98 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 7.23 Total: 18.89 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -9.37 Total: -140.96 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -1.19 Total: -32.38 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -74.78 -1.66 -76.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026338936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.796 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds