Wall clock time and date at job start Tue Mar 31 2020 16:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38500 * 120.82074 * 2 1 4 4 C 1.39266 * 119.19122 * 180.21712 * 3 2 1 5 5 C 1.48328 * 119.57025 * 179.77441 * 4 3 2 6 6 O 1.21491 * 120.00105 * 359.73071 * 5 4 3 7 7 N 1.34776 * 120.00026 * 179.73194 * 5 4 3 8 8 C 1.46494 * 120.00378 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47603 * 185.14007 * 8 7 5 10 10 H 1.09007 * 109.86996 * 301.34972 * 9 8 7 11 11 C 1.54324 * 109.88494 * 62.35958 * 9 8 7 12 12 C 1.55157 * 102.93999 * 141.61477 * 11 9 8 13 13 C 1.54907 * 101.58224 * 324.49709 * 12 11 9 14 14 N 1.47015 * 109.88695 * 180.17288 * 9 8 7 15 15 C 1.36942 * 125.64783 * 61.59887 * 14 9 8 16 16 H 1.07992 * 119.99952 * 18.28994 * 15 14 9 17 17 C 1.38811 * 119.99642 * 198.28041 * 15 14 9 18 18 N 1.31611 * 120.00540 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47394 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47264 * 120.00310 * 19 17 15 22 22 H 1.48498 * 109.47229 * 239.99974 * 19 17 15 23 23 N 1.32754 * 120.85499 * 359.50643 * 4 3 2 24 24 C 1.31385 * 121.80227 * 0.24431 * 23 4 3 25 25 C 1.39770 * 120.71887 * 0.02562 * 24 23 4 26 26 C 1.48006 * 120.46147 * 179.97438 * 25 24 23 27 27 N 1.34769 * 120.00352 * 354.09564 * 26 25 24 28 28 O 1.21537 * 119.99421 * 174.09364 * 26 25 24 29 29 H 1.08999 * 109.46899 * 263.40792 * 1 2 3 30 30 H 1.09000 * 109.47114 * 23.40655 * 1 2 3 31 31 H 1.09000 * 109.47208 * 143.40187 * 1 2 3 32 32 H 1.07992 * 120.40472 * 0.02562 * 3 2 1 33 33 H 0.97003 * 119.99601 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.47184 * 65.13832 * 8 7 5 35 35 H 1.09002 * 109.47198 * 305.13883 * 8 7 5 36 36 H 1.09003 * 110.72090 * 259.97719 * 11 9 8 37 37 H 1.08997 * 110.71836 * 23.24802 * 11 9 8 38 38 H 1.08999 * 111.00119 * 82.57739 * 12 11 9 39 39 H 1.09003 * 110.99729 * 206.42354 * 12 11 9 40 40 H 1.08994 * 110.36934 * 278.17220 * 13 12 11 41 41 H 1.08999 * 110.36384 * 155.84731 * 13 12 11 42 42 H 0.97007 * 120.00689 * 179.97438 * 18 17 15 43 43 H 1.08000 * 119.63970 * 180.02562 * 24 23 4 44 44 H 0.97006 * 119.99927 * 0.02562 * 27 26 25 45 45 H 0.96995 * 120.00383 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1894 0.0000 4 6 3.6087 1.1498 -0.0046 5 6 4.3770 2.4186 -0.0097 6 8 3.7917 3.4832 -0.0148 7 7 5.7245 2.3904 -0.0087 8 6 6.4834 3.6434 -0.0132 9 6 7.9766 3.3349 -0.1403 10 1 8.2957 2.7011 0.6872 11 6 8.2536 2.6249 -1.4822 12 6 9.6060 3.2406 -1.9284 13 6 9.4654 4.6986 -1.4243 14 7 8.7475 4.5867 -0.1415 15 6 8.7909 5.4984 0.8794 16 1 8.4846 5.2101 1.8741 17 6 9.2287 6.7929 0.6358 18 7 9.6016 7.1443 -0.5765 19 14 9.2885 8.0362 2.0286 20 1 8.8210 7.3959 3.2842 21 1 10.6834 8.5135 2.2065 22 1 8.4093 9.1877 1.7024 23 7 4.2569 -0.0087 0.0009 24 6 3.6205 -1.1581 0.0060 25 6 2.2234 -1.2008 0.0053 26 6 1.5124 -2.4988 0.0106 27 7 2.2068 -3.6481 -0.1041 28 8 0.3021 -2.5282 0.1183 29 1 -0.3633 -0.1180 1.0209 30 1 -0.3633 0.9431 -0.4082 31 1 -0.3633 -0.8250 -0.6127 32 1 1.6967 2.1360 0.0004 33 1 6.1918 1.5403 -0.0043 34 1 6.3015 4.1817 0.9169 35 1 6.1663 4.2573 -0.8563 36 1 8.3491 1.5488 -1.3366 37 1 7.4701 2.8492 -2.2060 38 1 10.4429 2.7384 -1.4431 39 1 9.7100 3.2105 -3.0130 40 1 8.8862 5.2907 -2.1328 41 1 10.4485 5.1436 -1.2713 42 1 9.9073 8.0491 -0.7469 43 1 4.1830 -2.0801 0.0108 44 1 3.1728 -3.6246 -0.1896 45 1 1.7409 -4.4988 -0.1003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028148931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:41 Heat of formation + Delta-G solvation = -15.817723 kcal Electronic energy + Delta-G solvation = -27770.598675 eV Core-core repulsion = 23788.489173 eV Total energy + Delta-G solvation = -3982.109501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.28029 -39.75789 -38.70660 -37.56982 -34.82521 -34.39223 -33.88885 -32.48114 -31.74561 -29.68070 -28.73990 -28.29983 -25.85327 -24.70684 -23.74750 -23.04103 -21.74006 -20.49262 -20.05311 -19.54308 -18.40298 -18.04222 -17.50036 -16.66203 -16.49845 -15.73528 -15.53762 -15.48143 -15.15018 -14.86937 -14.69899 -14.31229 -14.01261 -13.83405 -13.59230 -13.23573 -13.06258 -12.95466 -12.85553 -12.55861 -12.11576 -11.89504 -11.77087 -11.30891 -10.93482 -10.81011 -10.62101 -10.31873 -10.26070 -10.24886 -10.07290 -9.95742 -9.91408 -9.83667 -9.76746 -9.63987 -9.63319 -8.70061 -8.58162 -6.81937 -5.79624 -3.17021 -0.07429 0.77641 2.14661 2.86317 2.91371 3.15877 3.39056 3.45714 3.47431 3.61185 3.76230 4.17277 4.27495 4.42174 4.51037 4.56651 4.85223 5.08478 5.31957 5.33024 5.36342 5.40844 5.41486 5.51108 5.62249 5.71636 5.81016 5.92680 6.05368 6.09553 6.13214 6.25385 6.25726 6.45366 6.52733 6.58670 6.67746 6.74598 6.79335 7.04072 7.24380 7.47503 7.62323 7.69366 7.75317 7.77529 8.23693 8.33356 9.15780 9.76213 10.45063 11.33234 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002363 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.974603 B =11847.976191 C =12676.785245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.125 4.125 4 C 0.118 3.882 5 C 0.558 3.442 6 O -0.529 6.529 7 N -0.697 5.697 8 C 0.106 3.894 9 C 0.152 3.848 10 H 0.039 0.961 11 C -0.126 4.126 12 C -0.148 4.148 13 C 0.173 3.827 14 N -0.587 5.587 15 C -0.236 4.236 16 H 0.075 0.925 17 C 0.001 3.999 18 N -0.912 5.912 19 Si 0.909 3.091 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 N -0.466 5.466 24 C 0.139 3.861 25 C -0.189 4.189 26 C 0.571 3.429 27 N -0.849 5.849 28 O -0.530 6.530 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.407 0.593 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.065 0.935 42 H 0.254 0.746 43 H 0.164 0.836 44 H 0.402 0.598 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 -22.106 -1.472 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.145 4.145 4 C -0.019 4.019 5 C 0.340 3.660 6 O -0.406 6.406 7 N -0.347 5.347 8 C -0.019 4.019 9 C 0.043 3.957 10 H 0.056 0.944 11 C -0.164 4.164 12 C -0.187 4.187 13 C 0.049 3.951 14 N -0.312 5.312 15 C -0.365 4.365 16 H 0.093 0.907 17 C -0.197 4.197 18 N -0.558 5.558 19 Si 0.739 3.261 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 N -0.177 5.177 24 C -0.022 4.022 25 C -0.195 4.195 26 C 0.356 3.644 27 N -0.413 5.413 28 O -0.407 6.407 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.175 0.825 33 H 0.242 0.758 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.181 0.819 44 H 0.232 0.768 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.401 -20.824 -1.372 24.275 hybrid contribution -0.271 -0.068 0.657 0.714 sum -12.672 -20.892 -0.714 24.445 Atomic orbital electron populations 1.21117 0.88510 1.03979 1.04293 1.20513 0.97832 0.90849 0.89930 1.22123 0.93821 0.99652 0.98952 1.21612 0.91847 0.92549 0.95912 1.17884 0.82948 0.86921 0.78220 1.90814 1.69699 1.29953 1.50103 1.46030 1.05316 1.11578 1.71762 1.22370 0.92645 0.84036 1.02811 1.21145 0.88714 0.90359 0.95456 0.94367 1.22600 0.98273 0.98331 0.97209 1.22997 0.96193 1.00137 0.99362 1.21404 0.97430 0.89803 0.86490 1.44472 1.49844 1.20558 1.16294 1.19007 1.40006 0.89348 0.88093 0.90690 1.24986 1.01260 0.96865 0.96555 1.69943 1.48406 1.18472 1.18967 0.86095 0.77251 0.81508 0.81211 1.20314 1.21699 1.21555 1.67591 1.40513 0.97703 1.11916 1.22895 0.90115 0.96342 0.92891 1.20911 0.95271 0.94231 1.09075 1.18026 0.86750 0.83939 0.75686 1.43742 1.11831 1.08543 1.77196 1.90796 1.13583 1.87174 1.49141 0.89678 0.91208 0.88316 0.82510 0.75799 0.91207 0.91157 0.92258 0.91844 0.92292 0.92336 0.95235 0.91666 0.93603 0.81867 0.76835 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.82 36.00 0.32 -0.75 16 2 C 0.02 0.17 5.95 -103.93 -0.62 -0.45 16 3 C -0.12 -1.43 9.30 -39.10 -0.36 -1.79 16 4 C 0.12 1.53 6.75 -82.93 -0.56 0.97 16 5 C 0.56 9.02 7.82 -12.11 -0.09 8.93 16 6 O -0.53 -10.35 16.30 5.37 0.09 -10.26 16 7 N -0.70 -10.91 5.29 -61.10 -0.32 -11.24 16 8 C 0.11 2.05 5.05 -4.05 -0.02 2.03 16 9 C 0.15 2.98 3.25 -66.96 -0.22 2.76 16 10 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 11 C -0.13 -2.09 5.99 -24.90 -0.15 -2.24 16 12 C -0.15 -2.68 7.08 -24.58 -0.17 -2.85 16 13 C 0.17 4.09 5.37 -2.53 -0.01 4.08 16 14 N -0.59 -14.43 3.13 -162.58 -0.51 -14.94 16 15 C -0.24 -6.41 9.78 -15.06 -0.15 -6.56 16 16 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 17 C 0.00 0.03 5.46 -17.43 -0.10 -0.06 16 18 N -0.91 -26.43 10.73 55.49 0.60 -25.84 16 19 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 N -0.47 -5.10 9.52 -9.48 -0.09 -5.19 16 24 C 0.14 1.11 10.69 -17.17 -0.18 0.92 16 25 C -0.19 -1.65 5.90 -104.73 -0.62 -2.27 16 26 C 0.57 4.60 8.00 -12.26 -0.10 4.50 16 27 N -0.85 -3.26 8.83 30.57 0.27 -3.00 16 28 O -0.53 -5.89 14.33 5.33 0.08 -5.81 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 31 H 0.10 0.94 5.98 -51.93 -0.31 0.63 16 32 H 0.16 1.76 7.63 -52.49 -0.40 1.36 16 33 H 0.41 5.47 7.58 -40.82 -0.31 5.16 16 34 H 0.07 1.50 7.98 -51.93 -0.41 1.09 16 35 H 0.07 1.51 8.12 -51.93 -0.42 1.09 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.76 7.97 -51.93 -0.41 0.35 16 41 H 0.06 1.70 7.20 -51.93 -0.37 1.33 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.16 0.60 6.46 -52.49 -0.34 0.26 16 44 H 0.40 0.49 6.93 -40.82 -0.28 0.21 16 45 H 0.41 1.06 8.93 -40.82 -0.36 0.70 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -34.06 371.72 -8.46 -42.52 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.12 Total: 3.98 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -3.04 Total: 7.20 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.06 Total: -60.20 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.16 Total: -16.07 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.06 -8.46 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028148931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.705 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds