Wall clock time and date at job start Tue Mar 31 2020 16:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38495 * 120.82191 * 2 1 4 4 C 1.39261 * 119.19362 * 180.21988 * 3 2 1 5 5 C 1.48338 * 119.56893 * 179.76691 * 4 3 2 6 6 O 1.21483 * 120.00089 * 359.72759 * 5 4 3 7 7 N 1.34776 * 119.99700 * 179.45167 * 5 4 3 8 8 C 1.46497 * 119.99864 * 180.27710 * 7 5 4 9 9 C 1.53003 * 109.47115 * 182.92786 * 8 7 5 10 10 H 1.09002 * 109.87141 * 300.52490 * 9 8 7 11 11 C 1.54322 * 109.88630 * 179.50853 * 9 8 7 12 12 C 1.55148 * 102.94396 * 218.39153 * 11 9 8 13 13 C 1.54908 * 101.58458 * 35.49645 * 12 11 9 14 14 N 1.47027 * 109.88250 * 61.69584 * 9 8 7 15 15 C 1.36927 * 125.65132 * 298.34107 * 14 9 8 16 16 H 1.08005 * 120.00183 * 336.46240 * 15 14 9 17 17 C 1.38815 * 120.00214 * 156.46399 * 15 14 9 18 18 N 1.31622 * 119.99589 * 157.70748 * 17 15 14 19 19 Si 1.86788 * 119.99977 * 337.71228 * 17 15 14 20 20 H 1.48507 * 109.47304 * 84.87859 * 19 17 15 21 21 H 1.48497 * 109.47279 * 204.87785 * 19 17 15 22 22 H 1.48500 * 109.47318 * 324.88073 * 19 17 15 23 23 N 1.32746 * 120.85701 * 359.49418 * 4 3 2 24 24 C 1.31390 * 121.79792 * 0.25036 * 23 4 3 25 25 C 1.39756 * 120.72173 * 0.02562 * 24 23 4 26 26 C 1.48005 * 120.46541 * 179.97438 * 25 24 23 27 27 N 1.34779 * 120.00030 * 353.57700 * 26 25 24 28 28 O 1.21531 * 120.00245 * 173.58093 * 26 25 24 29 29 H 1.09002 * 109.46991 * 266.55623 * 1 2 3 30 30 H 1.08997 * 109.47384 * 26.55971 * 1 2 3 31 31 H 1.08994 * 109.47135 * 146.56082 * 1 2 3 32 32 H 1.08004 * 120.39994 * 359.96726 * 3 2 1 33 33 H 0.97000 * 119.99922 * 0.27930 * 7 5 4 34 34 H 1.09000 * 109.47036 * 302.92402 * 8 7 5 35 35 H 1.08995 * 109.47158 * 62.92920 * 8 7 5 36 36 H 1.09005 * 110.71611 * 336.75187 * 11 9 8 37 37 H 1.08994 * 110.72073 * 100.02027 * 11 9 8 38 38 H 1.09001 * 111.00725 * 153.57300 * 12 11 9 39 39 H 1.09000 * 111.00621 * 277.42205 * 12 11 9 40 40 H 1.09002 * 110.36688 * 81.82986 * 13 12 11 41 41 H 1.09001 * 110.36842 * 204.04330 * 13 12 11 42 42 H 0.97004 * 119.99533 * 179.97438 * 18 17 15 43 43 H 1.08006 * 119.63498 * 180.02562 * 24 23 4 44 44 H 0.97001 * 119.99609 * 0.02562 * 27 26 25 45 45 H 0.97000 * 119.99949 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6086 1.1498 -0.0047 5 6 4.3770 2.4186 -0.0100 6 8 3.7917 3.4832 -0.0152 7 7 5.7244 2.3905 -0.0033 8 6 6.4833 3.6436 -0.0024 9 6 7.9801 3.3335 -0.0681 10 1 8.2709 2.7273 0.7899 11 6 8.7885 4.6480 -0.0801 12 6 9.9408 4.3383 -1.0717 13 6 9.2251 3.4372 -2.1087 14 7 8.2886 2.6199 -1.3160 15 6 7.7892 1.3983 -1.6812 16 1 7.4350 0.7120 -0.9262 17 6 7.7381 1.0420 -3.0219 18 7 7.6881 -0.2281 -3.3637 19 14 7.7405 2.3648 -4.3406 20 1 9.1397 2.7598 -4.6431 21 1 7.0978 1.8381 -5.5713 22 1 6.9859 3.5484 -3.8559 23 7 4.2568 -0.0086 0.0010 24 6 3.6204 -1.1581 0.0062 25 6 2.2235 -1.2008 0.0055 26 6 1.5124 -2.4988 0.0109 27 7 2.2059 -3.6477 -0.1141 28 8 0.3031 -2.5287 0.1279 29 1 -0.3633 -0.0617 1.0258 30 1 -0.3634 0.9192 -0.4595 31 1 -0.3633 -0.8575 -0.5663 32 1 1.6966 2.1360 -0.0005 33 1 6.1917 1.5405 0.0008 34 1 6.1979 4.2418 -0.8678 35 1 6.2670 4.1987 0.9104 36 1 8.1771 5.4733 -0.4450 37 1 9.1821 4.8677 0.9123 38 1 10.3116 5.2514 -1.5374 39 1 10.7481 3.7987 -0.5764 40 1 8.6800 4.0471 -2.8292 41 1 9.9469 2.8008 -2.6207 42 1 7.6521 -0.4771 -4.3006 43 1 4.1830 -2.0800 0.0112 44 1 3.1712 -3.6238 -0.2071 45 1 1.7398 -4.4983 -0.1109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028148932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:45 Heat of formation + Delta-G solvation = -8.668967 kcal Electronic energy + Delta-G solvation = -28813.734692 eV Core-core repulsion = 24831.935184 eV Total energy + Delta-G solvation = -3981.799508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.92139 -39.48153 -38.53958 -37.74353 -34.49554 -34.07461 -33.55778 -32.67195 -31.40584 -30.01117 -29.40244 -27.98103 -25.80599 -24.59283 -23.59248 -22.74471 -21.51356 -20.99062 -19.88060 -19.50240 -18.05283 -17.73116 -17.30306 -16.64097 -16.21547 -15.72312 -15.31175 -15.19650 -15.08828 -15.02978 -14.66209 -14.37085 -13.65790 -13.59436 -13.41092 -13.06301 -12.90933 -12.79466 -12.64699 -12.53116 -12.49715 -12.28963 -11.71580 -11.34502 -11.21343 -10.96110 -10.74769 -10.53250 -10.24903 -10.08640 -10.01665 -9.96307 -9.91397 -9.57012 -9.49648 -9.28038 -9.26577 -8.71702 -8.38599 -7.09261 -6.02348 -3.34495 0.29071 1.16624 2.47707 3.17682 3.24650 3.31717 3.45991 3.50446 3.52486 3.99362 4.17997 4.50573 4.53496 4.63464 4.76627 4.89192 4.92593 5.16677 5.22607 5.23645 5.37275 5.42006 5.54367 5.62353 5.64956 5.70483 5.80269 5.88720 5.99241 6.06357 6.09078 6.22574 6.22859 6.27316 6.36055 6.45837 6.56118 6.63394 6.75334 6.80523 7.00760 7.06513 7.64501 7.70850 8.00065 8.14105 8.25274 8.64852 8.77072 9.62070 10.12927 11.12645 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003600 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.946604 B = 7776.299882 C = 8747.564050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.013 3.987 3 C -0.130 4.130 4 C 0.121 3.879 5 C 0.559 3.441 6 O -0.552 6.552 7 N -0.675 5.675 8 C 0.110 3.890 9 C 0.144 3.856 10 H 0.051 0.949 11 C -0.123 4.123 12 C -0.131 4.131 13 C 0.114 3.886 14 N -0.602 5.602 15 C -0.242 4.242 16 H 0.093 0.907 17 C 0.034 3.966 18 N -0.899 5.899 19 Si 0.877 3.123 20 H -0.285 1.285 21 H -0.304 1.304 22 H -0.277 1.277 23 N -0.449 5.449 24 C 0.146 3.854 25 C -0.192 4.192 26 C 0.573 3.427 27 N -0.848 5.848 28 O -0.535 6.535 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.423 0.577 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.262 0.738 43 H 0.165 0.835 44 H 0.404 0.596 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 -1.200 8.538 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.004 3.996 3 C -0.151 4.151 4 C -0.017 4.017 5 C 0.343 3.657 6 O -0.431 6.431 7 N -0.327 5.327 8 C -0.015 4.015 9 C 0.037 3.963 10 H 0.069 0.931 11 C -0.162 4.162 12 C -0.169 4.169 13 C -0.011 4.011 14 N -0.327 5.327 15 C -0.369 4.369 16 H 0.111 0.889 17 C -0.166 4.166 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.212 1.212 21 H -0.232 1.232 22 H -0.203 1.203 23 N -0.160 5.160 24 C -0.016 4.016 25 C -0.198 4.198 26 C 0.359 3.641 27 N -0.412 5.412 28 O -0.413 6.413 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.171 0.829 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.182 0.818 44 H 0.234 0.766 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.470 -0.459 8.459 10.659 hybrid contribution -0.340 -0.132 -1.174 1.230 sum -6.810 -0.591 7.284 9.989 Atomic orbital electron populations 1.21125 0.88807 1.04121 1.03874 1.20430 0.97570 0.90914 0.90663 1.22032 0.93828 0.99376 0.99875 1.21540 0.91611 0.92755 0.95749 1.17872 0.83055 0.86905 0.77909 1.90720 1.70151 1.30110 1.52144 1.46061 1.05021 1.11908 1.69743 1.22049 0.93029 0.85822 1.00645 1.21340 0.90848 0.92534 0.91572 0.93116 1.22517 0.97167 0.96974 0.99498 1.22721 0.97402 0.99266 0.97551 1.21909 0.92224 0.93204 0.93773 1.44906 1.50020 1.19254 1.18543 1.18442 1.38092 0.88313 0.92094 0.88931 1.25045 0.99216 0.95568 0.96813 1.69832 1.52314 1.14870 1.17136 0.87016 0.77684 0.82806 0.81743 1.21200 1.23169 1.20250 1.67684 1.40192 0.97567 1.10522 1.22953 0.89884 0.96589 0.92194 1.20903 0.95342 0.94103 1.09418 1.18036 0.86643 0.83996 0.75446 1.43761 1.12152 1.08456 1.76852 1.90749 1.13684 1.87201 1.49710 0.90007 0.91475 0.88153 0.82891 0.73520 0.91750 0.92472 0.91358 0.91244 0.91723 0.91196 0.96029 0.92403 0.92796 0.81846 0.76551 0.76262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.93 36.00 0.32 -1.10 16 2 C 0.01 0.17 5.95 -103.93 -0.62 -0.45 16 3 C -0.13 -1.97 9.31 -39.11 -0.36 -2.33 16 4 C 0.12 2.13 6.75 -82.94 -0.56 1.57 16 5 C 0.56 11.03 7.82 -12.10 -0.09 10.93 16 6 O -0.55 -11.72 16.31 5.38 0.09 -11.63 16 7 N -0.68 -13.30 4.88 -61.10 -0.30 -13.60 16 8 C 0.11 2.04 5.17 -4.04 -0.02 2.02 16 9 C 0.14 2.61 3.35 -66.95 -0.22 2.39 16 10 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.12 -1.81 6.48 -24.90 -0.16 -1.97 16 12 C -0.13 -2.04 7.08 -24.59 -0.17 -2.22 16 13 C 0.11 2.35 4.74 -2.53 -0.01 2.34 16 14 N -0.60 -13.38 2.87 -162.57 -0.47 -13.85 16 15 C -0.24 -6.24 8.83 -15.06 -0.13 -6.37 16 16 H 0.09 2.48 6.49 -52.48 -0.34 2.14 16 17 C 0.03 0.93 5.43 -17.43 -0.09 0.83 16 18 N -0.90 -26.08 13.97 55.49 0.78 -25.31 16 19 Si 0.88 22.32 24.37 -169.99 -4.14 18.18 16 20 H -0.29 -6.98 6.69 56.52 0.38 -6.60 16 21 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 22 H -0.28 -7.16 6.85 56.52 0.39 -6.77 16 23 N -0.45 -7.64 9.52 -9.48 -0.09 -7.73 16 24 C 0.15 1.98 10.69 -17.17 -0.18 1.79 16 25 C -0.19 -2.51 5.90 -104.73 -0.62 -3.13 16 26 C 0.57 6.80 7.99 -12.26 -0.10 6.70 16 27 N -0.85 -6.72 8.83 30.57 0.27 -6.45 16 28 O -0.54 -7.62 14.28 5.34 0.08 -7.55 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.10 1.26 5.76 -51.93 -0.30 0.96 16 32 H 0.15 2.16 7.63 -52.48 -0.40 1.76 16 33 H 0.42 8.67 5.06 -40.82 -0.21 8.46 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.48 5.54 -51.93 -0.29 0.19 16 41 H 0.06 1.27 7.24 -51.93 -0.38 0.90 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.16 1.65 6.47 -52.48 -0.34 1.31 16 44 H 0.40 2.45 6.93 -40.82 -0.28 2.17 16 45 H 0.41 2.51 8.93 -40.82 -0.36 2.15 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -33.46 361.37 -7.23 -40.70 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.86 Total: 10.78 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -3.03 Total: 11.01 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: 0.19 Total: -66.94 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.16 Total: -19.17 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.46 -7.23 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028148932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.027 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds