Wall clock time and date at job start Tue Mar 31 2020 16:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38495 * 120.82191 * 2 1 4 4 C 1.39261 * 119.19362 * 180.21988 * 3 2 1 5 5 C 1.48338 * 119.56893 * 179.76691 * 4 3 2 6 6 O 1.21483 * 120.00089 * 359.72759 * 5 4 3 7 7 N 1.34776 * 119.99700 * 179.45167 * 5 4 3 8 8 C 1.46497 * 119.99864 * 180.27710 * 7 5 4 9 9 C 1.53003 * 109.47115 * 182.92786 * 8 7 5 10 10 H 1.09002 * 109.87141 * 300.52490 * 9 8 7 11 11 C 1.54322 * 109.88630 * 179.50853 * 9 8 7 12 12 C 1.55148 * 102.94396 * 218.39153 * 11 9 8 13 13 C 1.54908 * 101.58458 * 35.49645 * 12 11 9 14 14 N 1.47027 * 109.88250 * 61.69584 * 9 8 7 15 15 C 1.36927 * 125.65132 * 298.34107 * 14 9 8 16 16 H 1.08005 * 120.00183 * 336.46240 * 15 14 9 17 17 C 1.38815 * 120.00214 * 156.46399 * 15 14 9 18 18 N 1.31622 * 119.99589 * 157.70748 * 17 15 14 19 19 Si 1.86788 * 119.99977 * 337.71228 * 17 15 14 20 20 H 1.48507 * 109.47304 * 84.87859 * 19 17 15 21 21 H 1.48497 * 109.47279 * 204.87785 * 19 17 15 22 22 H 1.48500 * 109.47318 * 324.88073 * 19 17 15 23 23 N 1.32746 * 120.85701 * 359.49418 * 4 3 2 24 24 C 1.31390 * 121.79792 * 0.25036 * 23 4 3 25 25 C 1.39756 * 120.72173 * 0.02562 * 24 23 4 26 26 C 1.48005 * 120.46541 * 179.97438 * 25 24 23 27 27 N 1.34779 * 120.00030 * 353.57700 * 26 25 24 28 28 O 1.21531 * 120.00245 * 173.58093 * 26 25 24 29 29 H 1.09002 * 109.46991 * 266.55623 * 1 2 3 30 30 H 1.08997 * 109.47384 * 26.55971 * 1 2 3 31 31 H 1.08994 * 109.47135 * 146.56082 * 1 2 3 32 32 H 1.08004 * 120.39994 * 359.96726 * 3 2 1 33 33 H 0.97000 * 119.99922 * 0.27930 * 7 5 4 34 34 H 1.09000 * 109.47036 * 302.92402 * 8 7 5 35 35 H 1.08995 * 109.47158 * 62.92920 * 8 7 5 36 36 H 1.09005 * 110.71611 * 336.75187 * 11 9 8 37 37 H 1.08994 * 110.72073 * 100.02027 * 11 9 8 38 38 H 1.09001 * 111.00725 * 153.57300 * 12 11 9 39 39 H 1.09000 * 111.00621 * 277.42205 * 12 11 9 40 40 H 1.09002 * 110.36688 * 81.82986 * 13 12 11 41 41 H 1.09001 * 110.36842 * 204.04330 * 13 12 11 42 42 H 0.97004 * 119.99533 * 179.97438 * 18 17 15 43 43 H 1.08006 * 119.63498 * 180.02562 * 24 23 4 44 44 H 0.97001 * 119.99609 * 0.02562 * 27 26 25 45 45 H 0.97000 * 119.99949 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6086 1.1498 -0.0047 5 6 4.3770 2.4186 -0.0100 6 8 3.7917 3.4832 -0.0152 7 7 5.7244 2.3905 -0.0033 8 6 6.4833 3.6436 -0.0024 9 6 7.9801 3.3335 -0.0681 10 1 8.2709 2.7273 0.7899 11 6 8.7885 4.6480 -0.0801 12 6 9.9408 4.3383 -1.0717 13 6 9.2251 3.4372 -2.1087 14 7 8.2886 2.6199 -1.3160 15 6 7.7892 1.3983 -1.6812 16 1 7.4350 0.7120 -0.9262 17 6 7.7381 1.0420 -3.0219 18 7 7.6881 -0.2281 -3.3637 19 14 7.7405 2.3648 -4.3406 20 1 9.1397 2.7598 -4.6431 21 1 7.0978 1.8381 -5.5713 22 1 6.9859 3.5484 -3.8559 23 7 4.2568 -0.0086 0.0010 24 6 3.6204 -1.1581 0.0062 25 6 2.2235 -1.2008 0.0055 26 6 1.5124 -2.4988 0.0109 27 7 2.2059 -3.6477 -0.1141 28 8 0.3031 -2.5287 0.1279 29 1 -0.3633 -0.0617 1.0258 30 1 -0.3634 0.9192 -0.4595 31 1 -0.3633 -0.8575 -0.5663 32 1 1.6966 2.1360 -0.0005 33 1 6.1917 1.5405 0.0008 34 1 6.1979 4.2418 -0.8678 35 1 6.2670 4.1987 0.9104 36 1 8.1771 5.4733 -0.4450 37 1 9.1821 4.8677 0.9123 38 1 10.3116 5.2514 -1.5374 39 1 10.7481 3.7987 -0.5764 40 1 8.6800 4.0471 -2.8292 41 1 9.9469 2.8008 -2.6207 42 1 7.6521 -0.4771 -4.3006 43 1 4.1830 -2.0800 0.0112 44 1 3.1712 -3.6238 -0.2071 45 1 1.7398 -4.4983 -0.1109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028148932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:44 Heat of formation + Delta-G solvation = -35.170348 kcal Electronic energy + Delta-G solvation = -28814.883878 eV Core-core repulsion = 24831.935184 eV Total energy + Delta-G solvation = -3982.948694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.07332 -40.78416 -39.81294 -39.20707 -35.73075 -35.25128 -34.70093 -34.57338 -32.56174 -31.76532 -30.85187 -29.01073 -27.15623 -26.21863 -25.09753 -23.93969 -22.75055 -22.21682 -21.40933 -20.90149 -19.24780 -18.95982 -18.57528 -18.18135 -17.34294 -17.26616 -16.94087 -16.52329 -16.43379 -16.19391 -15.95354 -15.54253 -15.19958 -14.93875 -14.85637 -14.75178 -14.23846 -14.09474 -13.91200 -13.76044 -13.72019 -13.40827 -13.27463 -13.01839 -12.78301 -12.73310 -12.34549 -12.08697 -11.74345 -11.60600 -11.40215 -11.30980 -11.21428 -10.86209 -10.72993 -10.60565 -10.49924 -10.44556 -9.94195 -8.97857 -8.13591 -5.38752 -0.88639 0.04714 1.25845 1.29674 1.36719 1.42508 1.95844 2.12139 2.38866 2.42813 2.74685 3.00001 3.13962 3.32357 3.50517 3.57278 3.65411 3.87072 3.89758 3.98061 4.02307 4.17176 4.31454 4.43398 4.45517 4.55018 4.59051 4.65948 4.74153 4.75438 4.81155 4.99723 5.03596 5.04946 5.16342 5.22344 5.29461 5.38741 5.48368 5.50725 5.76878 5.84719 6.15941 6.28734 6.41110 6.70960 6.81115 7.13466 7.19013 7.59862 8.18473 9.04895 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003600 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.946604 B = 7776.299882 C = 8747.564050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.010 3.990 3 C -0.128 4.128 4 C 0.093 3.907 5 C 0.554 3.446 6 O -0.575 6.575 7 N -0.682 5.682 8 C 0.112 3.888 9 C 0.140 3.860 10 H 0.061 0.939 11 C -0.113 4.113 12 C -0.117 4.117 13 C 0.102 3.898 14 N -0.619 5.619 15 C -0.210 4.210 16 H 0.078 0.922 17 C -0.019 4.019 18 N -0.939 5.939 19 Si 0.920 3.080 20 H -0.273 1.273 21 H -0.318 1.318 22 H -0.287 1.287 23 N -0.477 5.477 24 C 0.144 3.856 25 C -0.185 4.185 26 C 0.573 3.427 27 N -0.826 5.826 28 O -0.559 6.559 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.418 0.582 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.009 0.991 41 H 0.038 0.962 42 H 0.257 0.743 43 H 0.196 0.804 44 H 0.416 0.584 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 -0.615 9.982 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.002 3.998 3 C -0.149 4.149 4 C -0.043 4.043 5 C 0.339 3.661 6 O -0.456 6.456 7 N -0.333 5.333 8 C -0.014 4.014 9 C 0.034 3.966 10 H 0.078 0.922 11 C -0.151 4.151 12 C -0.155 4.155 13 C -0.022 4.022 14 N -0.344 5.344 15 C -0.339 4.339 16 H 0.096 0.904 17 C -0.215 4.215 18 N -0.586 5.586 19 Si 0.752 3.248 20 H -0.199 1.199 21 H -0.247 1.247 22 H -0.213 1.213 23 N -0.188 5.188 24 C -0.018 4.018 25 C -0.190 4.190 26 C 0.358 3.642 27 N -0.391 5.391 28 O -0.440 6.440 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.176 0.824 33 H 0.259 0.741 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.026 0.974 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.213 0.787 44 H 0.248 0.752 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.065 0.151 9.923 11.630 hybrid contribution -0.483 -0.374 -1.514 1.633 sum -6.548 -0.223 8.409 10.660 Atomic orbital electron populations 1.21130 0.87181 1.04580 1.04479 1.20716 0.98690 0.90578 0.89847 1.22091 0.92960 1.00304 0.99500 1.21339 0.92296 0.92245 0.98468 1.18251 0.83092 0.87626 0.77140 1.90682 1.70473 1.31138 1.53267 1.46144 1.05317 1.12007 1.69844 1.22071 0.93159 0.85370 1.00758 1.21589 0.91074 0.94307 0.89655 0.92170 1.22561 0.96214 0.94904 1.01442 1.22682 0.97426 0.99313 0.96091 1.22018 0.91811 0.93413 0.95008 1.45107 1.50528 1.18842 1.19953 1.18455 1.34846 0.89262 0.91311 0.90427 1.25451 1.01224 0.96428 0.98366 1.69914 1.55851 1.15977 1.16825 0.86302 0.77876 0.80786 0.79840 1.19906 1.24678 1.21327 1.67617 1.41231 0.98291 1.11657 1.23458 0.90480 0.96645 0.91226 1.21124 0.95244 0.94877 1.07804 1.17865 0.86296 0.84316 0.75699 1.43591 1.12741 1.07893 1.74846 1.90749 1.14584 1.87478 1.51155 0.89022 0.89967 0.88857 0.82356 0.74134 0.94134 0.89946 0.90601 0.87424 0.88841 0.90030 0.97373 0.94377 0.93393 0.78718 0.75230 0.74825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.93 71.24 0.64 -1.93 16 2 C 0.01 0.27 5.95 -19.42 -0.12 0.15 16 3 C -0.13 -3.85 9.31 22.58 0.21 -3.64 16 4 C 0.09 3.32 6.75 41.94 0.28 3.60 16 5 C 0.55 22.29 7.82 86.93 0.68 22.97 16 6 O -0.57 -24.76 16.31 -3.66 -0.06 -24.82 16 7 N -0.68 -27.14 4.88 -465.51 -2.27 -29.41 16 8 C 0.11 4.03 5.17 86.38 0.45 4.48 16 9 C 0.14 4.79 3.35 45.34 0.15 4.94 16 10 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 11 C -0.11 -2.88 6.48 31.78 0.21 -2.68 16 12 C -0.12 -3.23 7.08 31.98 0.23 -3.00 16 13 C 0.10 4.09 4.74 86.85 0.41 4.50 16 14 N -0.62 -27.12 2.87 -668.24 -1.91 -29.04 16 15 C -0.21 -10.94 8.83 84.04 0.74 -10.19 16 16 H 0.08 4.25 6.49 -2.91 -0.02 4.24 16 17 C -0.02 -1.07 5.43 84.86 0.46 -0.61 16 18 N -0.94 -56.02 13.97 21.65 0.30 -55.72 16 19 Si 0.92 47.18 24.37 68.60 1.67 48.86 16 20 H -0.27 -13.20 6.69 99.48 0.67 -12.54 16 21 H -0.32 -16.83 7.11 99.48 0.71 -16.12 16 22 H -0.29 -14.93 6.85 99.48 0.68 -14.25 16 23 N -0.48 -16.39 9.52 -183.90 -1.75 -18.14 16 24 C 0.14 3.79 10.69 85.13 0.91 4.70 16 25 C -0.18 -4.63 5.90 -19.93 -0.12 -4.75 16 26 C 0.57 12.63 7.99 86.83 0.69 13.32 16 27 N -0.83 -11.20 8.83 -175.49 -1.55 -12.75 16 28 O -0.56 -15.10 14.28 -3.81 -0.05 -15.15 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.52 8.08 -2.39 -0.02 1.51 16 31 H 0.09 2.24 5.76 -2.39 -0.01 2.22 16 32 H 0.16 4.48 7.63 -2.91 -0.02 4.46 16 33 H 0.42 17.45 5.06 -92.71 -0.47 16.98 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.08 1.86 7.85 -2.38 -0.02 1.84 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.01 0.37 5.54 -2.39 -0.01 0.35 16 41 H 0.04 1.66 7.24 -2.39 -0.02 1.64 16 42 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 43 H 0.20 3.60 6.47 -2.91 -0.02 3.59 16 44 H 0.42 3.99 6.93 -92.71 -0.64 3.35 16 45 H 0.42 4.15 8.93 -92.71 -0.83 3.32 16 Total: -1.00 -74.73 361.37 -0.73 -75.46 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.93 Total: 28.85 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 5.83 Total: 31.87 kcal Atomic # 7 Polarization: -137.88 SS G_CDS: -7.18 Total: -145.06 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.11 Total: -39.98 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.67 Total: 48.86 kcal Total: -74.73 -0.73 -75.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028148932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.293 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds