Wall clock time and date at job start Tue Mar 31 2020 16:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38494 * 120.81912 * 2 1 4 4 C 1.39271 * 119.18893 * 180.02562 * 3 2 1 5 5 C 1.48327 * 119.57047 * 179.97438 * 4 3 2 6 6 O 1.21492 * 120.00034 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99970 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00003 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47143 * 180.02562 * 8 7 5 10 10 H 1.08995 * 110.88835 * 54.29801 * 9 8 7 11 11 C 1.55162 * 111.00293 * 178.17748 * 9 8 7 12 12 C 1.54324 * 102.93905 * 153.57549 * 11 9 8 13 13 N 1.47023 * 107.27384 * 337.80398 * 12 11 9 14 14 C 1.36934 * 125.64877 * 178.97287 * 13 12 11 15 15 H 1.08004 * 119.99966 * 186.09635 * 14 13 12 16 16 C 1.38809 * 120.00066 * 6.09963 * 14 13 12 17 17 N 1.31627 * 119.99996 * 353.09671 * 16 14 13 18 18 Si 1.86802 * 119.99981 * 173.09348 * 16 14 13 19 19 H 1.48505 * 109.47158 * 94.98757 * 18 16 14 20 20 H 1.48505 * 109.46905 * 214.98266 * 18 16 14 21 21 H 1.48494 * 109.47282 * 334.98590 * 18 16 14 22 22 C 1.47472 * 108.72074 * 358.97913 * 13 12 11 23 23 N 1.32746 * 120.85685 * 0.27762 * 4 3 2 24 24 C 1.31390 * 121.80055 * 359.42938 * 23 4 3 25 25 C 1.39765 * 120.71910 * 0.56708 * 24 23 4 26 26 C 1.48005 * 120.46381 * 179.69810 * 25 24 23 27 27 N 1.34774 * 119.99854 * 6.29088 * 26 25 24 28 28 O 1.21526 * 119.99787 * 186.28408 * 26 25 24 29 29 H 1.09001 * 109.47510 * 96.57843 * 1 2 3 30 30 H 1.08999 * 109.47360 * 216.57669 * 1 2 3 31 31 H 1.09008 * 109.47156 * 336.58075 * 1 2 3 32 32 H 1.07993 * 120.40854 * 0.04665 * 3 2 1 33 33 H 0.96997 * 120.00090 * 0.02562 * 7 5 4 34 34 H 1.09006 * 109.46817 * 299.99947 * 8 7 5 35 35 H 1.08994 * 109.47339 * 59.99437 * 8 7 5 36 36 H 1.08998 * 110.72254 * 271.93761 * 11 9 8 37 37 H 1.08996 * 110.71922 * 35.03544 * 11 9 8 38 38 H 1.09000 * 109.88386 * 97.22825 * 12 11 9 39 39 H 1.09005 * 109.87683 * 218.23415 * 12 11 9 40 40 H 0.97004 * 119.99840 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.34826 * 265.24835 * 22 13 12 42 42 H 1.08994 * 110.40560 * 142.91206 * 22 13 12 43 43 H 1.08002 * 119.64054 * 180.26332 * 24 23 4 44 44 H 0.96996 * 119.99837 * 359.97438 * 27 26 25 45 45 H 0.97002 * 119.99976 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2165 1.1894 0.0000 4 6 3.6086 1.1497 -0.0005 5 6 4.3770 2.4185 -0.0011 6 8 3.7917 3.4831 -0.0007 7 7 5.7245 2.3902 -0.0022 8 6 6.4834 3.6433 -0.0022 9 6 7.9815 3.3323 -0.0041 10 1 8.2402 2.6720 -0.8318 11 6 8.8202 4.6368 -0.0503 12 6 10.1452 4.2197 0.6220 13 7 9.8605 3.0416 1.4543 14 6 10.7774 2.3525 2.2023 15 1 10.4894 1.4401 2.7033 16 6 12.0770 2.8266 2.3167 17 7 12.4660 3.8600 1.6003 18 14 13.2738 1.9981 3.4875 19 1 14.0812 0.9977 2.7441 20 1 14.1744 3.0198 4.0795 21 1 12.5174 1.3184 4.5695 22 6 8.4241 2.7246 1.3503 23 7 4.2568 -0.0087 -0.0066 24 6 3.6204 -1.1582 -0.0011 25 6 2.2234 -1.2008 -0.0005 26 6 1.5123 -2.4989 -0.0011 27 7 2.2061 -3.6473 0.1257 28 8 0.3028 -2.5290 -0.1158 29 1 -0.3634 -0.1177 -1.0209 30 1 -0.3634 -0.8253 0.6124 31 1 -0.3634 0.9431 0.4085 32 1 1.6967 2.1360 0.0008 33 1 6.1918 1.5402 -0.0029 34 1 6.2314 4.2207 -0.8918 35 1 6.2328 4.2199 0.8881 36 1 8.9920 4.9487 -1.0804 37 1 8.3309 5.4301 0.5149 38 1 10.8834 3.9664 -0.1390 39 1 10.5181 5.0340 1.2433 40 1 13.3741 4.1916 1.6805 41 1 7.8739 3.1853 2.1707 42 1 8.2722 1.6453 1.3494 43 1 4.1829 -2.0801 -0.0020 44 1 3.1714 -3.6232 0.2169 45 1 1.7400 -4.4981 0.1257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028816199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:49 Heat of formation + Delta-G solvation = -15.230397 kcal Electronic energy + Delta-G solvation = -27404.202853 eV Core-core repulsion = 23422.118820 eV Total energy + Delta-G solvation = -3982.084033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.36462 -39.89841 -38.83297 -37.61375 -34.96505 -34.62591 -34.05581 -32.51314 -31.79019 -29.82317 -28.37874 -28.35185 -26.14814 -25.05608 -23.62463 -23.06916 -21.80897 -20.64149 -19.96736 -19.77037 -18.43982 -18.09832 -17.56981 -16.81996 -16.58374 -15.89878 -15.61983 -15.56206 -15.38795 -14.99862 -14.65207 -14.53408 -14.07201 -13.91938 -13.57826 -13.29816 -13.15649 -13.06460 -12.92902 -12.62232 -12.34611 -11.99600 -11.76485 -11.43029 -10.92238 -10.78608 -10.70307 -10.57466 -10.30113 -10.27498 -10.12755 -10.01091 -9.97326 -9.88812 -9.74626 -9.72574 -9.63845 -9.01599 -8.57737 -6.82661 -5.72813 -3.05045 -0.16145 0.70429 2.05198 2.73947 2.86495 2.96957 3.39196 3.44943 3.47077 3.48740 3.66783 4.11192 4.22095 4.33425 4.49031 4.49320 4.73525 5.01894 5.08464 5.21970 5.23873 5.29575 5.34994 5.40386 5.53514 5.62194 5.68364 5.86450 5.88423 6.00208 6.03657 6.04416 6.23423 6.33954 6.36976 6.50634 6.52848 6.67635 6.72349 6.91193 7.13706 7.51649 7.55488 7.63664 7.66675 7.82311 8.06622 8.25889 9.21675 9.82342 10.48965 11.39437 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.002261 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.865883 B =12381.040385 C =13813.026278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.123 4.123 4 C 0.114 3.886 5 C 0.564 3.436 6 O -0.533 6.533 7 N -0.699 5.699 8 C 0.130 3.870 9 C -0.118 4.118 10 H 0.081 0.919 11 C -0.134 4.134 12 C 0.177 3.823 13 N -0.606 5.606 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.142 3.858 23 N -0.464 5.464 24 C 0.141 3.859 25 C -0.186 4.186 26 C 0.570 3.430 27 N -0.848 5.848 28 O -0.529 6.529 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.413 0.587 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.252 0.748 41 H 0.020 0.980 42 H 0.036 0.964 43 H 0.166 0.834 44 H 0.403 0.597 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.644 -11.180 -5.626 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 C -0.144 4.144 4 C -0.024 4.024 5 C 0.348 3.652 6 O -0.409 6.409 7 N -0.349 5.349 8 C 0.006 3.994 9 C -0.138 4.138 10 H 0.099 0.901 11 C -0.173 4.173 12 C 0.052 3.948 13 N -0.332 5.332 14 C -0.357 4.357 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.016 3.984 23 N -0.175 5.175 24 C -0.021 4.021 25 C -0.192 4.192 26 C 0.356 3.644 27 N -0.412 5.412 28 O -0.407 6.407 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.250 0.750 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.055 0.945 43 H 0.183 0.817 44 H 0.232 0.768 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.644 -10.139 -5.648 24.559 hybrid contribution 0.548 -1.265 0.641 1.520 sum -21.096 -11.404 -5.006 24.498 Atomic orbital electron populations 1.21120 0.88448 1.04012 1.04324 1.20513 0.97866 0.90833 0.89963 1.22091 0.93697 0.99640 0.98995 1.21475 0.91786 0.92457 0.96638 1.17846 0.82672 0.87096 0.77629 1.90793 1.69792 1.30023 1.50336 1.45951 1.05464 1.11404 1.72113 1.21522 0.90507 0.85000 1.02336 1.22624 0.91569 0.99405 1.00194 0.90104 1.22855 0.98431 0.95467 1.00563 1.21151 0.90621 0.89769 0.93268 1.44482 1.02125 1.32545 1.54091 1.19045 0.90121 1.04154 1.22395 0.90493 1.24826 0.97409 0.98185 1.00005 1.69981 1.17507 1.27013 1.42249 0.86136 0.80970 0.78174 0.80710 1.21701 1.21638 1.20650 1.21580 0.86931 0.97070 0.92853 1.67592 1.40507 0.97722 1.11704 1.22925 0.90127 0.96361 0.92644 1.20946 0.95267 0.94321 1.08620 1.18008 0.86737 0.83931 0.75768 1.43751 1.11973 1.08603 1.76903 1.90794 1.13593 1.87134 1.49159 0.89654 0.88266 0.91208 0.82523 0.75029 0.91273 0.90935 0.91953 0.92131 0.93925 0.93584 0.93763 0.96263 0.94526 0.81708 0.76753 0.76017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 8.82 36.00 0.32 -0.65 16 2 C 0.02 0.15 5.95 -103.94 -0.62 -0.47 16 3 C -0.12 -1.25 9.30 -39.10 -0.36 -1.62 16 4 C 0.11 1.32 6.75 -82.94 -0.56 0.76 16 5 C 0.56 7.78 7.82 -12.11 -0.09 7.69 16 6 O -0.53 -8.65 16.31 5.37 0.09 -8.56 16 7 N -0.70 -9.29 5.44 -61.09 -0.33 -9.63 16 8 C 0.13 1.84 5.12 -4.04 -0.02 1.82 16 9 C -0.12 -1.93 3.07 -88.47 -0.27 -2.20 16 10 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 11 C -0.13 -2.40 6.42 -24.89 -0.16 -2.56 16 12 C 0.18 4.23 5.38 -3.06 -0.02 4.21 16 13 N -0.61 -15.30 3.40 -170.04 -0.58 -15.88 16 14 C -0.23 -6.34 10.26 -15.06 -0.15 -6.50 16 15 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 16 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 17 N -0.92 -26.96 10.36 55.49 0.58 -26.38 16 18 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.14 2.83 6.56 -2.50 -0.02 2.82 16 23 N -0.46 -4.84 9.52 -9.48 -0.09 -4.93 16 24 C 0.14 1.09 10.69 -17.17 -0.18 0.90 16 25 C -0.19 -1.54 5.90 -104.73 -0.62 -2.16 16 26 C 0.57 4.45 8.00 -12.26 -0.10 4.35 16 27 N -0.85 -3.28 8.83 30.56 0.27 -3.01 16 28 O -0.53 -5.70 14.33 5.34 0.08 -5.62 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.88 5.97 -51.93 -0.31 0.57 16 31 H 0.07 0.44 8.06 -51.92 -0.42 0.03 16 32 H 0.16 1.49 7.63 -52.49 -0.40 1.09 16 33 H 0.41 5.16 7.76 -40.82 -0.32 4.84 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 38 H 0.04 1.12 7.55 -51.93 -0.39 0.73 16 39 H 0.05 1.23 7.37 -51.93 -0.38 0.84 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.17 0.63 6.46 -52.49 -0.34 0.29 16 44 H 0.40 0.57 6.93 -40.82 -0.28 0.29 16 45 H 0.41 1.09 8.93 -40.82 -0.36 0.72 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -34.72 372.12 -8.48 -43.19 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.11 Total: 2.19 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -2.95 Total: 6.08 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.16 Total: -59.83 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.16 Total: -14.18 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.72 -8.48 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028816199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.960 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds