Wall clock time and date at job start Tue Mar 31 2020 16:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38491 * 120.82226 * 2 1 4 4 C 1.39263 * 119.18905 * 180.24050 * 3 2 1 5 5 C 1.48333 * 119.56897 * 179.75625 * 4 3 2 6 6 O 1.21503 * 119.99851 * 359.73472 * 5 4 3 7 7 N 1.34771 * 120.00090 * 179.72883 * 5 4 3 8 8 C 1.46498 * 120.00096 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47262 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.78010 * 303.21793 * 9 8 7 11 11 C 1.55153 * 110.72304 * 179.97438 * 9 8 7 12 12 C 1.54912 * 101.58453 * 206.13484 * 11 9 8 13 13 N 1.47428 * 104.82879 * 37.01002 * 12 11 9 14 14 C 1.36931 * 125.64761 * 156.13968 * 13 12 11 15 15 H 1.07999 * 120.00233 * 179.68517 * 14 13 12 16 16 C 1.38817 * 120.00222 * 359.68971 * 14 13 12 17 17 N 1.31624 * 119.99811 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00162 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47243 * 89.99447 * 18 16 14 20 20 H 1.48503 * 109.46919 * 209.99553 * 18 16 14 21 21 H 1.48502 * 109.46940 * 329.99608 * 18 16 14 22 22 C 1.47020 * 108.70411 * 335.87101 * 13 12 11 23 23 N 1.32740 * 120.85633 * 359.48797 * 4 3 2 24 24 C 1.31381 * 121.80651 * 0.26659 * 23 4 3 25 25 C 1.39767 * 120.71371 * 359.97438 * 24 23 4 26 26 C 1.48014 * 120.46163 * 179.97438 * 25 24 23 27 27 N 1.34783 * 119.99958 * 353.89482 * 26 25 24 28 28 O 1.21527 * 119.99988 * 173.89736 * 26 25 24 29 29 H 1.09000 * 109.47248 * 263.90109 * 1 2 3 30 30 H 1.09005 * 109.47235 * 23.90088 * 1 2 3 31 31 H 1.08994 * 109.47384 * 143.90108 * 1 2 3 32 32 H 1.07998 * 120.40262 * 0.02562 * 3 2 1 33 33 H 0.97000 * 120.00175 * 0.02562 * 7 5 4 34 34 H 1.09006 * 109.47172 * 60.00653 * 8 7 5 35 35 H 1.08991 * 109.47561 * 300.00784 * 8 7 5 36 36 H 1.09004 * 111.00401 * 324.20928 * 11 9 8 37 37 H 1.09000 * 111.00764 * 88.02418 * 11 9 8 38 38 H 1.08994 * 110.36962 * 278.17136 * 12 11 9 39 39 H 1.09005 * 110.36814 * 155.84363 * 12 11 9 40 40 H 0.96994 * 119.99763 * 180.02562 * 17 16 14 41 41 H 1.08992 * 109.88461 * 120.47985 * 22 13 12 42 42 H 1.09008 * 109.88272 * 241.49216 * 22 13 12 43 43 H 1.08000 * 119.64566 * 180.02562 * 24 23 4 44 44 H 0.96996 * 120.00036 * 0.02562 * 27 26 25 45 45 H 0.96999 * 119.99837 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6087 1.1496 -0.0051 5 6 4.3771 2.4184 -0.0106 6 8 3.7918 3.4831 -0.0156 7 7 5.7245 2.3901 -0.0101 8 6 6.4835 3.6432 -0.0161 9 6 7.9815 3.3322 -0.0147 10 1 8.2467 2.7110 0.8408 11 6 8.8140 4.6414 -0.0217 12 6 10.1305 4.1694 -0.6879 13 7 9.7070 3.2018 -1.7165 14 6 10.4174 2.8677 -2.8384 15 1 10.0213 2.1405 -3.5317 16 6 11.6466 3.4637 -3.0848 17 7 12.1292 4.3503 -2.2401 18 14 12.6153 3.0084 -4.6158 19 1 12.2332 3.9122 -5.7303 20 1 14.0682 3.1473 -4.3418 21 1 12.3146 1.6037 -4.9923 22 6 8.3988 2.6503 -1.3348 23 7 4.2568 -0.0088 0.0003 24 6 3.6204 -1.1582 0.0053 25 6 2.2234 -1.2008 0.0058 26 6 1.5122 -2.4989 0.0109 27 7 2.2063 -3.6480 -0.1090 28 8 0.3025 -2.5285 0.1231 29 1 -0.3634 -0.1092 1.0218 30 1 -0.3634 0.9396 -0.4164 31 1 -0.3634 -0.8303 -0.6054 32 1 1.6968 2.1359 0.0004 33 1 6.1919 1.5402 -0.0064 34 1 6.2320 4.2246 0.8710 35 1 6.2324 4.2158 -0.9089 36 1 8.3270 5.4109 -0.6207 37 1 8.9943 4.9953 0.9934 38 1 10.7748 3.6853 0.0460 39 1 10.6457 5.0121 -1.1490 40 1 12.9880 4.7670 -2.4125 41 1 7.6649 2.8655 -2.1113 42 1 8.4789 1.5730 -1.1889 43 1 4.1829 -2.0802 0.0100 44 1 3.1719 -3.6244 -0.1982 45 1 1.7403 -4.4987 -0.1052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028816200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:54 Heat of formation + Delta-G solvation = -13.788819 kcal Electronic energy + Delta-G solvation = -27430.060915 eV Core-core repulsion = 23448.039394 eV Total energy + Delta-G solvation = -3982.021522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.36408 -39.89724 -38.83603 -37.61931 -34.96104 -34.62500 -34.05611 -32.51891 -31.78708 -29.82848 -28.37097 -28.32164 -26.13982 -25.07901 -23.61864 -23.06322 -21.81186 -20.68730 -19.96701 -19.66764 -18.44082 -18.09932 -17.55873 -16.84169 -16.58908 -15.90475 -15.60424 -15.56348 -15.41315 -14.99362 -14.70613 -14.58632 -14.04805 -13.92033 -13.61435 -13.24710 -13.16540 -13.06187 -12.76975 -12.61912 -12.50430 -11.78807 -11.70805 -11.50045 -10.96283 -10.80668 -10.69262 -10.56830 -10.32135 -10.28789 -10.12460 -10.02394 -9.98345 -9.86036 -9.74203 -9.72342 -9.51605 -9.00930 -8.65352 -6.83423 -5.65703 -3.07288 -0.15925 0.70612 2.05418 2.74298 2.86457 2.97503 3.39624 3.44446 3.46424 3.49140 3.66852 4.11259 4.22083 4.33630 4.48485 4.49383 4.73773 5.02085 5.08821 5.23741 5.25009 5.29852 5.35227 5.40507 5.51990 5.62800 5.68779 5.86770 5.87519 6.01981 6.04923 6.09182 6.23366 6.33860 6.37770 6.56169 6.58213 6.71403 6.72126 6.90781 7.13886 7.51007 7.52283 7.62632 7.66545 7.85388 8.07473 8.36363 9.22018 9.82958 10.47818 11.38294 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002227 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.070962 B =12569.009195 C =13694.525069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.123 4.123 4 C 0.114 3.886 5 C 0.564 3.436 6 O -0.532 6.532 7 N -0.699 5.699 8 C 0.130 3.870 9 C -0.115 4.115 10 H 0.077 0.923 11 C -0.135 4.135 12 C 0.151 3.849 13 N -0.604 5.604 14 C -0.222 4.222 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.923 5.923 18 Si 0.915 3.085 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.141 3.859 23 N -0.464 5.464 24 C 0.141 3.859 25 C -0.186 4.186 26 C 0.570 3.430 27 N -0.848 5.848 28 O -0.529 6.529 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.413 0.587 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.012 0.988 39 H 0.107 0.893 40 H 0.252 0.748 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.166 0.834 44 H 0.403 0.597 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.263 -12.549 7.612 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 C -0.144 4.144 4 C -0.023 4.023 5 C 0.347 3.653 6 O -0.409 6.409 7 N -0.350 5.350 8 C 0.007 3.993 9 C -0.134 4.134 10 H 0.096 0.904 11 C -0.174 4.174 12 C 0.027 3.973 13 N -0.331 5.331 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.208 4.208 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.015 3.985 23 N -0.176 5.176 24 C -0.021 4.021 25 C -0.192 4.192 26 C 0.356 3.644 27 N -0.412 5.412 28 O -0.407 6.407 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.175 0.825 33 H 0.249 0.751 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.030 0.970 39 H 0.125 0.875 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.183 0.817 44 H 0.232 0.768 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -20.295 -11.493 7.576 24.524 hybrid contribution 0.348 -1.199 -0.777 1.470 sum -19.947 -12.692 6.800 24.601 Atomic orbital electron populations 1.21127 0.88442 1.04073 1.04298 1.20514 0.97872 0.90829 0.89946 1.22092 0.93700 0.99656 0.98966 1.21473 0.91791 0.92448 0.96609 1.17852 0.82679 0.87100 0.77642 1.90798 1.69781 1.30018 1.50298 1.45954 1.05473 1.11397 1.72132 1.21573 0.90378 0.84988 1.02400 1.22448 0.92090 0.99506 0.99368 0.90428 1.23011 0.98957 0.95192 1.00249 1.21944 0.90743 0.95102 0.89553 1.44506 1.17454 1.47373 1.23719 1.19075 0.99200 1.19225 0.97523 0.90549 1.24792 0.97671 0.99407 0.98882 1.69793 1.19824 1.31182 1.36336 0.86071 0.79249 0.77850 0.82317 1.21592 1.21656 1.20766 1.21324 0.89148 0.95351 0.92678 1.67580 1.40525 0.97726 1.11724 1.22917 0.90129 0.96350 0.92678 1.20944 0.95265 0.94318 1.08642 1.18013 0.86740 0.83930 0.75753 1.43751 1.11939 1.08565 1.76984 1.90792 1.13580 1.87147 1.49147 0.89658 0.91198 0.88232 0.82513 0.75078 0.91248 0.90847 0.91794 0.92067 0.96997 0.87489 0.93731 0.95837 0.96261 0.81722 0.76765 0.76020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.83 36.01 0.32 -0.66 16 2 C 0.02 0.15 5.95 -103.93 -0.62 -0.46 16 3 C -0.12 -1.27 9.30 -39.11 -0.36 -1.63 16 4 C 0.11 1.34 6.75 -82.94 -0.56 0.78 16 5 C 0.56 7.92 7.82 -12.11 -0.09 7.82 16 6 O -0.53 -8.80 16.31 5.36 0.09 -8.72 16 7 N -0.70 -9.47 5.39 -61.10 -0.33 -9.80 16 8 C 0.13 1.89 4.99 -4.04 -0.02 1.87 16 9 C -0.11 -1.89 3.02 -88.79 -0.27 -2.16 16 10 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 11 C -0.13 -2.46 6.53 -24.58 -0.16 -2.62 16 12 C 0.15 3.62 5.89 -2.53 -0.01 3.61 16 13 N -0.60 -15.37 3.39 -170.07 -0.58 -15.94 16 14 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 18 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.14 2.86 6.52 -3.06 -0.02 2.84 16 23 N -0.46 -4.88 9.52 -9.48 -0.09 -4.97 16 24 C 0.14 1.09 10.69 -17.17 -0.18 0.91 16 25 C -0.19 -1.55 5.90 -104.72 -0.62 -2.17 16 26 C 0.57 4.46 8.00 -12.25 -0.10 4.36 16 27 N -0.85 -3.27 8.83 30.57 0.27 -3.00 16 28 O -0.53 -5.71 14.32 5.34 0.08 -5.63 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.10 0.89 5.95 -51.93 -0.31 0.59 16 32 H 0.16 1.52 7.63 -52.49 -0.40 1.12 16 33 H 0.41 5.20 7.65 -40.82 -0.31 4.89 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 36 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 42 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 43 H 0.17 0.63 6.46 -52.49 -0.34 0.29 16 44 H 0.40 0.56 6.93 -40.82 -0.28 0.28 16 45 H 0.41 1.08 8.93 -40.82 -0.36 0.71 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -34.50 371.03 -8.44 -42.95 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.05 Total: 3.05 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.95 Total: 5.72 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.17 Total: -59.95 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.16 Total: -14.35 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.50 -8.44 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028816200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds