Wall clock time and date at job start Tue Mar 31 2020 17:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.32521 * 120.41236 * 2 1 4 4 C 1.31757 * 120.96684 * 180.28222 * 3 2 1 5 5 N 1.31788 * 121.81633 * 359.69009 * 4 3 2 6 6 C 1.32799 * 120.71629 * 0.02562 * 5 4 3 7 7 O 1.35516 * 120.51588 * 179.97438 * 6 5 4 8 8 C 1.38193 * 120.41257 * 179.71384 * 2 1 3 9 9 C 1.50700 * 120.82445 * 0.02827 * 8 2 1 10 10 C 1.52997 * 109.47230 * 269.71633 * 9 8 2 11 11 C 1.50700 * 109.47230 * 179.97438 * 10 9 8 12 12 O 1.21276 * 119.99802 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.47876 * 126.94111 * 359.97226 * 13 11 10 15 15 C 1.56020 * 105.09963 * 182.02432 * 14 13 11 16 16 H 1.08997 * 116.24716 * 159.68700 * 15 14 13 17 17 C 1.58889 * 100.03310 * 32.52494 * 15 14 13 18 18 C 1.49282 * 126.94699 * 180.02562 * 13 11 10 19 19 H 1.09009 * 116.15156 * 15.81689 * 18 13 11 20 20 C 1.56017 * 104.09325 * 246.67841 * 18 13 11 21 21 N 1.47874 * 105.10084 * 287.91681 * 20 18 13 22 22 C 1.36941 * 126.94424 * 182.00116 * 21 20 18 23 23 H 1.08001 * 119.99769 * 173.68175 * 22 21 20 24 24 C 1.38811 * 119.99767 * 353.67882 * 22 21 20 25 25 N 1.31617 * 120.00037 * 6.43882 * 24 22 21 26 26 Si 1.86803 * 119.99877 * 186.43587 * 24 22 21 27 27 H 1.48494 * 109.47040 * 94.98495 * 26 24 22 28 28 H 1.48501 * 109.46972 * 214.98821 * 26 24 22 29 29 H 1.48502 * 109.46751 * 334.98444 * 26 24 22 30 30 H 1.08999 * 109.47286 * 270.28056 * 1 2 3 31 31 H 1.09003 * 109.47606 * 30.28068 * 1 2 3 32 32 H 1.08997 * 109.47460 * 150.28618 * 1 2 3 33 33 H 1.08001 * 119.09202 * 179.70350 * 4 3 2 34 34 H 0.96699 * 113.99866 * 270.02933 * 7 6 5 35 35 H 1.09005 * 109.46704 * 149.71071 * 9 8 2 36 36 H 1.09001 * 109.46900 * 29.71932 * 9 8 2 37 37 H 1.08997 * 109.46921 * 59.99945 * 10 9 8 38 38 H 1.09006 * 109.46755 * 300.00184 * 10 9 8 39 39 H 1.08996 * 110.31905 * 300.92908 * 14 13 11 40 40 H 1.08999 * 110.31592 * 63.11858 * 14 13 11 41 41 H 1.09006 * 113.28936 * 192.40419 * 17 15 14 42 42 H 1.08990 * 112.06997 * 64.44124 * 17 15 14 43 43 H 1.08999 * 110.31981 * 46.82264 * 20 18 13 44 44 H 1.08994 * 110.32016 * 169.01421 * 20 18 13 45 45 H 0.97003 * 119.99896 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1778 1.1429 0.0000 4 6 3.4953 1.1556 -0.0056 5 7 4.2009 0.0425 -0.0053 6 6 3.5998 -1.1416 0.0002 7 8 4.3293 -2.2836 -0.0001 8 6 2.2065 -1.1918 0.0060 9 6 1.4813 -2.5128 0.0119 10 6 1.2416 -2.9565 1.4564 11 6 0.5158 -4.2772 1.4623 12 8 0.2192 -4.8108 0.4144 13 7 0.1956 -4.8649 2.6322 14 6 0.4800 -4.3542 3.9905 15 6 -0.0605 -5.4517 4.9588 16 1 0.3433 -5.4426 5.9711 17 6 0.2073 -6.7499 4.0828 18 6 -0.5169 -6.1634 2.8186 19 1 -0.5704 -6.8119 1.9440 20 6 -1.8794 -5.7601 3.4629 21 7 -1.5477 -5.3614 4.8477 22 6 -2.4238 -4.9623 5.8215 23 1 -2.0715 -4.7928 6.8283 24 6 -3.7646 -4.7755 5.5146 25 7 -4.2188 -5.1024 4.3233 26 14 -4.9244 -4.0602 6.7924 27 1 -5.0392 -2.5935 6.5908 28 1 -6.2637 -4.6858 6.6506 29 1 -4.3921 -4.3329 8.1517 30 1 -0.3634 0.0050 1.0276 31 1 -0.3634 0.8874 -0.5182 32 1 -0.3634 -0.8925 -0.5094 33 1 4.0112 2.1044 -0.0103 34 1 4.5377 -2.6170 -0.8835 35 1 2.0847 -3.2607 -0.5026 36 1 0.5243 -2.4042 -0.4985 37 1 0.6382 -2.2085 1.9708 38 1 2.1986 -3.0650 1.9667 39 1 1.5532 -4.2230 4.1285 40 1 -0.0419 -3.4119 4.1574 41 1 -0.2887 -7.6404 4.4691 42 1 1.2708 -6.9162 3.9115 43 1 -2.3200 -4.9219 2.9230 44 1 -2.5623 -6.6096 3.4670 45 1 -5.1557 -4.9716 4.1087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032495533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:59 Heat of formation + Delta-G solvation = 27.328930 kcal Electronic energy + Delta-G solvation = -28812.838219 eV Core-core repulsion = 24832.599697 eV Total energy + Delta-G solvation = -3980.238522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57530 -40.03316 -38.07647 -37.90295 -35.35779 -33.65752 -33.38600 -31.69837 -30.62968 -29.15376 -28.62785 -28.41312 -25.68999 -25.19522 -23.54126 -23.06083 -22.23155 -20.35468 -19.87628 -19.10129 -18.41485 -18.31058 -17.30785 -16.52128 -16.37766 -15.85885 -15.41220 -15.34650 -14.75604 -14.45173 -14.25049 -13.96858 -13.72871 -13.47890 -13.38219 -13.10986 -12.92301 -12.64708 -12.33380 -12.19552 -12.08557 -11.88245 -11.66926 -11.37738 -11.12356 -11.04166 -10.89807 -10.84339 -10.79619 -10.59996 -10.53682 -10.27872 -10.09536 -9.71114 -9.62373 -9.53170 -9.29368 -8.71852 -8.03491 -6.95619 -5.82260 -3.15981 0.54142 0.68664 3.00937 3.04558 3.30229 3.34377 3.39687 3.42172 3.46641 3.77051 4.09199 4.38520 4.41373 4.54583 4.79173 4.94871 4.97078 5.05638 5.16769 5.18128 5.25082 5.32355 5.37685 5.46287 5.52525 5.56333 5.58349 5.69627 5.75083 5.87374 5.89656 5.95971 6.14129 6.16741 6.26625 6.38401 6.44593 6.56154 6.65746 6.65987 7.06342 7.36119 7.48135 7.68252 7.78997 8.04618 8.08453 8.54924 9.05885 9.66837 10.36849 11.30082 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014689 B = 0.003073 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.762431 B = 9109.139382 C =10056.306599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.193 3.807 3 N -0.525 5.525 4 C 0.314 3.686 5 N -0.545 5.545 6 C 0.364 3.636 7 O -0.471 6.471 8 C -0.199 4.199 9 C -0.051 4.051 10 C -0.127 4.127 11 C 0.530 3.470 12 O -0.558 6.558 13 N -0.605 5.605 14 C 0.084 3.916 15 C 0.140 3.860 16 H 0.106 0.894 17 C -0.150 4.150 18 C 0.097 3.903 19 H 0.112 0.888 20 C 0.174 3.826 21 N -0.597 5.597 22 C -0.234 4.234 23 H 0.081 0.919 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.200 0.800 34 H 0.407 0.593 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.605 6.896 -8.627 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.049 3.951 3 N -0.241 5.241 4 C 0.026 3.974 5 N -0.270 5.270 6 C 0.176 3.824 7 O -0.279 6.279 8 C -0.205 4.205 9 C -0.090 4.090 10 C -0.167 4.167 11 C 0.318 3.682 12 O -0.438 6.438 13 N -0.338 5.338 14 C -0.042 4.042 15 C 0.031 3.969 16 H 0.124 0.876 17 C -0.190 4.190 18 C -0.006 4.006 19 H 0.130 0.870 20 C 0.049 3.951 21 N -0.322 5.322 22 C -0.362 4.362 23 H 0.098 0.902 24 C -0.201 4.201 25 N -0.562 5.562 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.216 0.784 34 H 0.266 0.734 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.616 7.532 -8.614 18.562 hybrid contribution -0.839 -0.243 0.265 0.913 sum 13.777 7.289 -8.349 17.681 Atomic orbital electron populations 1.20937 0.87304 1.04563 1.04482 1.21621 0.97870 0.86886 0.88728 1.68285 1.10220 1.30144 1.15500 1.24752 0.86444 0.95827 0.90363 1.67967 1.43299 0.98977 1.16757 1.19312 0.86642 0.85587 0.90830 1.84732 1.73532 1.35487 1.34137 1.21690 0.94261 0.98525 1.05986 1.20145 1.00903 0.91273 0.96655 1.21537 1.01721 0.95657 0.97812 1.20020 0.79327 0.86291 0.82529 1.90655 1.56264 1.66012 1.30841 1.49196 1.56528 1.22677 1.05405 1.23266 0.98417 0.99961 0.82536 1.23545 0.86611 0.91076 0.95699 0.87622 1.24430 0.98886 0.98842 0.96840 1.24290 0.94950 0.84336 0.97007 0.87017 1.21930 0.89722 0.99214 0.84243 1.45285 0.98992 1.77993 1.09881 1.19051 0.88547 1.39021 0.89555 0.90158 1.24853 0.97116 1.01189 0.96915 1.69934 1.14334 1.51857 1.20109 0.86132 0.80483 0.78908 0.80428 1.21612 1.21738 1.20550 0.88987 0.89642 0.89284 0.78352 0.73351 0.89676 0.89197 0.89167 0.89063 0.92760 0.91082 0.89625 0.91825 0.93297 0.92952 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.83 36.00 0.35 -0.73 16 2 C 0.19 2.13 6.82 -82.32 -0.56 1.57 16 3 N -0.53 -5.93 10.37 -10.87 -0.11 -6.04 16 4 C 0.31 3.19 12.28 -92.19 -1.13 2.06 16 5 N -0.55 -6.29 10.46 -14.64 -0.15 -6.44 16 6 C 0.36 4.07 7.81 -16.69 -0.13 3.94 16 7 O -0.47 -4.56 12.75 -18.24 -0.23 -4.80 16 8 C -0.20 -2.18 5.18 -104.20 -0.54 -2.72 16 9 C -0.05 -0.58 4.10 -27.88 -0.11 -0.70 16 10 C -0.13 -1.66 4.97 -27.88 -0.14 -1.80 16 11 C 0.53 9.03 7.90 -10.99 -0.09 8.95 16 12 O -0.56 -11.00 16.33 5.56 0.09 -10.91 16 13 N -0.60 -10.73 2.95 -156.80 -0.46 -11.19 16 14 C 0.08 1.38 6.05 -1.67 -0.01 1.37 16 15 C 0.14 2.53 5.55 -61.43 -0.34 2.18 16 16 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 17 C -0.15 -2.49 6.94 -21.26 -0.15 -2.64 16 18 C 0.10 1.83 5.19 -62.57 -0.32 1.50 16 19 H 0.11 2.06 8.05 -51.92 -0.42 1.64 16 20 C 0.17 4.08 4.75 -1.67 -0.01 4.07 16 21 N -0.60 -14.04 3.04 -155.11 -0.47 -14.51 16 22 C -0.23 -6.11 10.37 -15.06 -0.16 -6.26 16 23 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 24 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 25 N -0.92 -26.20 10.61 55.49 0.59 -25.61 16 26 Si 0.91 21.34 29.56 -169.99 -5.02 16.32 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.79 6.07 -51.93 -0.31 0.47 16 33 H 0.20 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.41 1.94 9.06 45.56 0.41 2.35 16 35 H 0.08 0.96 7.59 -51.93 -0.39 0.56 16 36 H 0.09 1.04 6.02 -51.93 -0.31 0.73 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.32 7.53 -51.93 -0.39 0.93 16 44 H 0.05 1.36 7.64 -51.93 -0.40 0.96 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -33.65 370.05 -9.22 -42.87 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.59 Total: 4.14 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -3.43 Total: 10.60 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.61 Total: -63.80 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.14 Total: -15.70 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.65 -9.22 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032495533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.199 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds