Wall clock time and date at job start Tue Mar 31 2020 17:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39808 * 120.08514 * 2 1 4 4 C 1.36023 * 119.08138 * 179.70286 * 3 2 1 5 5 C 1.50700 * 120.40553 * 180.28189 * 4 3 2 6 6 N 1.35865 * 119.18995 * 0.56658 * 4 3 2 7 7 C 1.46499 * 119.93796 * 179.69485 * 6 4 3 8 8 C 1.50700 * 109.46761 * 89.91085 * 7 6 4 9 9 O 1.21285 * 120.00261 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99655 * 180.02562 * 8 7 6 11 11 C 1.47871 * 126.94992 * 359.67915 * 10 8 7 12 12 C 1.55994 * 105.11752 * 181.91377 * 11 10 8 13 13 H 1.08997 * 116.82295 * 159.40196 * 12 11 10 14 14 C 1.57080 * 99.48847 * 33.13300 * 12 11 10 15 15 C 1.49301 * 126.94306 * 179.97438 * 10 8 7 16 16 H 1.08996 * 116.14734 * 15.81540 * 15 10 8 17 17 C 1.56019 * 104.09038 * 246.67141 * 15 10 8 18 18 N 1.47863 * 105.10602 * 288.76548 * 17 15 10 19 19 C 1.36935 * 126.94381 * 181.97863 * 18 17 15 20 20 H 1.08000 * 120.00228 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00126 * 0.02883 * 19 18 17 22 22 N 1.31617 * 120.00055 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47189 * 90.00108 * 23 21 19 25 25 H 1.48504 * 109.47163 * 210.00175 * 23 21 19 26 26 H 1.48505 * 109.47194 * 329.99740 * 23 21 19 27 27 C 1.34618 * 120.12807 * 359.72060 * 6 4 3 28 28 O 1.21951 * 119.52820 * 179.97438 * 27 6 4 29 29 N 1.31757 * 120.08200 * 180.27305 * 2 1 3 30 30 H 1.08994 * 109.47426 * 179.72581 * 1 2 3 31 31 H 1.08999 * 109.46666 * 299.72540 * 1 2 3 32 32 H 1.09001 * 109.46874 * 59.72234 * 1 2 3 33 33 H 1.08009 * 120.45714 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47682 * 265.11192 * 5 4 3 35 35 H 1.08998 * 109.47137 * 25.11625 * 5 4 3 36 36 H 1.09003 * 109.46703 * 145.11217 * 5 4 3 37 37 H 1.09001 * 109.47379 * 209.90855 * 7 6 4 38 38 H 1.08993 * 109.47398 * 329.91135 * 7 6 4 39 39 H 1.09003 * 110.31001 * 300.93568 * 11 10 8 40 40 H 1.09001 * 110.31458 * 63.11840 * 11 10 8 41 41 H 1.08999 * 112.36896 * 191.53247 * 14 12 11 42 42 H 1.08994 * 112.37023 * 64.08970 * 14 12 11 43 43 H 1.09000 * 110.31519 * 47.67927 * 17 15 10 44 44 H 1.09000 * 110.31172 * 169.85806 * 17 15 10 45 45 H 0.97001 * 120.00040 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2079 1.2097 0.0000 4 6 3.5679 1.1859 0.0062 5 6 4.3532 2.4721 0.0127 6 7 4.2097 -0.0116 0.0004 7 6 5.6740 -0.0563 0.0002 8 6 6.1761 -0.0762 1.4209 9 8 5.3884 -0.0547 2.3429 10 7 7.5006 -0.1170 1.6670 11 6 8.5897 -0.1530 0.6674 12 6 9.9048 -0.2425 1.5016 13 1 10.7883 -0.6213 0.9878 14 6 9.3833 -1.0901 2.7169 15 6 8.1646 -0.1409 3.0040 16 1 7.5275 -0.3909 3.8523 17 6 8.9119 1.2264 3.0815 18 7 10.0360 1.1058 2.1285 19 6 11.0018 2.0421 1.8722 20 1 11.7760 1.8352 1.1482 21 6 10.9858 3.2573 2.5430 22 7 10.0427 3.5094 3.4258 23 14 12.3038 4.5342 2.1940 24 1 11.8545 5.4203 1.0904 25 1 12.5423 5.3458 3.4145 26 1 13.5624 3.8517 1.7997 27 6 3.5026 -1.1571 -0.0055 28 8 4.0899 -2.2259 -0.0111 29 7 2.1675 -1.1401 -0.0054 30 1 -0.3634 -1.0276 -0.0049 31 1 -0.3632 0.5096 0.8924 32 1 -0.3633 0.5182 -0.8875 33 1 1.6767 2.1502 -0.0004 34 1 4.6221 2.7390 -1.0093 35 1 3.7465 3.2661 0.4480 36 1 5.2593 2.3414 0.6044 37 1 6.0100 -0.9553 -0.5165 38 1 6.0643 0.8237 -0.5108 39 1 8.4859 -1.0284 0.0262 40 1 8.5845 0.7581 0.0690 41 1 10.0946 -1.1128 3.5425 42 1 9.0691 -2.0908 2.4204 43 1 8.2481 2.0379 2.7832 44 1 9.2877 1.3955 4.0906 45 1 10.0313 4.3587 3.8943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032702807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:34 Heat of formation + Delta-G solvation = 43.103830 kcal Electronic energy + Delta-G solvation = -29421.494069 eV Core-core repulsion = 25441.939598 eV Total energy + Delta-G solvation = -3979.554471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97747 -40.12650 -38.11190 -37.37361 -36.05844 -33.77717 -32.40407 -31.81676 -30.68917 -29.40777 -28.77373 -28.45138 -26.88738 -25.29858 -23.65657 -23.14978 -22.16098 -20.78560 -19.98311 -18.73623 -18.52301 -17.69884 -17.34650 -16.56535 -16.15736 -15.93505 -15.64195 -15.21483 -14.62587 -14.29452 -14.05613 -13.92587 -13.79365 -13.67170 -13.59201 -13.30617 -13.19315 -12.70347 -12.36376 -12.29968 -12.25225 -12.00498 -11.77418 -11.52676 -11.40668 -11.12737 -10.95778 -10.90256 -10.88147 -10.79574 -10.68172 -10.36611 -10.16690 -9.74452 -9.68552 -9.65144 -8.81715 -8.49069 -8.17941 -7.04090 -5.86850 -3.21819 0.50661 1.58010 2.21023 2.75294 3.18314 3.29569 3.35328 3.37636 3.74961 3.96928 4.00692 4.32747 4.42058 4.53958 4.61371 4.96271 4.99131 5.01441 5.02234 5.07038 5.09536 5.23109 5.25766 5.28286 5.35253 5.45357 5.53439 5.53924 5.66762 5.67684 5.77022 5.81484 6.01161 6.12820 6.17712 6.31769 6.35271 6.41141 6.49334 6.56641 7.31817 7.35128 7.60765 7.78148 7.87092 7.99234 8.14602 8.31413 9.00039 9.60895 10.29503 11.25160 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.003212 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.423038 B = 8715.183481 C = 9537.081682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.271 3.729 3 C -0.300 4.300 4 C 0.231 3.769 5 C -0.136 4.136 6 N -0.495 5.495 7 C 0.074 3.926 8 C 0.518 3.482 9 O -0.543 6.543 10 N -0.600 5.600 11 C 0.078 3.922 12 C 0.142 3.858 13 H 0.109 0.891 14 C -0.152 4.152 15 C 0.099 3.901 16 H 0.114 0.886 17 C 0.176 3.824 18 N -0.597 5.597 19 C -0.233 4.233 20 H 0.081 0.919 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.639 3.361 28 O -0.534 6.534 29 N -0.555 5.555 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 -1.840 -9.065 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 C -0.326 4.326 4 C 0.112 3.888 5 C -0.193 4.193 6 N -0.210 5.210 7 C -0.053 4.053 8 C 0.304 3.696 9 O -0.421 6.421 10 N -0.334 5.334 11 C -0.048 4.048 12 C 0.034 3.966 13 H 0.127 0.873 14 C -0.192 4.192 15 C -0.003 4.003 16 H 0.132 0.868 17 C 0.050 3.950 18 N -0.321 5.321 19 C -0.360 4.360 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.342 3.658 28 O -0.409 6.409 29 N -0.290 5.290 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.174 0.826 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.084 -3.244 -8.515 15.944 hybrid contribution 1.102 1.632 -0.124 1.973 sum -11.983 -1.612 -8.638 14.859 Atomic orbital electron populations 1.20933 0.87688 1.04961 1.03683 1.22170 0.97716 0.88259 0.80892 1.21171 0.91792 1.00666 1.18970 1.21200 0.93451 0.87796 0.86383 1.21251 1.01294 0.92110 1.04595 1.46095 1.08567 1.07349 1.58981 1.21827 0.78568 1.07339 0.97560 1.19960 0.81697 0.77609 0.90353 1.90722 1.54448 1.51265 1.45696 1.49164 1.03769 1.70560 1.09896 1.23396 0.89106 1.00498 0.91762 1.23148 0.93534 0.87627 0.92331 0.87306 1.24188 0.97506 0.96994 1.00469 1.24421 0.91718 0.99396 0.84791 0.86836 1.21920 0.88082 0.90195 0.94758 1.45250 1.29579 1.12061 1.45232 1.19052 1.03690 0.93679 1.19624 0.90079 1.24823 0.98657 0.97975 0.98745 1.69912 1.33943 1.23986 1.28749 0.86113 0.80954 0.81426 0.77181 1.21603 1.21657 1.20601 1.18096 0.85264 0.83194 0.79267 1.90973 1.68853 1.27482 1.53555 1.69785 1.05360 1.28052 1.25753 0.89720 0.89089 0.89157 0.82575 0.88349 0.88040 0.89393 0.85281 0.86071 0.92371 0.90803 0.89569 0.91456 0.93525 0.92466 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.19 36.01 0.37 -0.43 16 2 C 0.27 3.14 6.84 -82.03 -0.56 2.58 16 3 C -0.30 -2.97 9.42 -39.79 -0.37 -3.35 16 4 C 0.23 2.70 6.68 -81.60 -0.55 2.15 16 5 C -0.14 -1.19 8.99 36.01 0.32 -0.87 16 6 N -0.50 -7.45 2.08 -118.41 -0.25 -7.70 16 7 C 0.07 1.04 4.49 -5.19 -0.02 1.02 16 8 C 0.52 9.34 7.47 -10.99 -0.08 9.26 16 9 O -0.54 -11.78 16.77 5.55 0.09 -11.69 16 10 N -0.60 -10.64 2.95 -156.77 -0.46 -11.10 16 11 C 0.08 1.22 6.01 -1.69 -0.01 1.21 16 12 C 0.14 2.49 5.52 -62.58 -0.35 2.15 16 13 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 14 C -0.15 -2.53 6.81 -22.28 -0.15 -2.68 16 15 C 0.10 1.88 5.25 -62.53 -0.33 1.55 16 16 H 0.11 2.16 8.05 -51.93 -0.42 1.74 16 17 C 0.18 4.00 4.77 -1.68 -0.01 4.00 16 18 N -0.60 -13.54 3.03 -156.38 -0.47 -14.02 16 19 C -0.23 -5.87 10.37 -15.06 -0.16 -6.02 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 22 N -0.92 -25.58 10.56 55.49 0.59 -24.99 16 23 Si 0.91 20.78 29.55 -169.99 -5.02 15.76 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.64 11.72 8.34 -88.17 -0.74 10.99 16 28 O -0.53 -11.59 16.73 4.96 0.08 -11.50 16 29 N -0.55 -9.11 10.39 -12.79 -0.13 -9.25 16 30 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.09 1.00 6.58 -51.93 -0.34 0.66 16 37 H 0.13 1.79 7.39 -51.93 -0.38 1.41 16 38 H 0.12 1.31 6.68 -51.93 -0.35 0.96 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.05 1.21 7.68 -51.93 -0.40 0.81 16 44 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -36.73 369.36 -9.20 -45.93 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.47 Total: 1.68 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: -2.73 Total: 21.32 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -0.73 Total: -67.05 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.18 Total: -23.19 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.73 -9.20 -45.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032702807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.032 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds