Wall clock time and date at job start Tue Mar 31 2020 16:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31775 * 119.09277 * 2 1 4 4 C 1.32501 * 120.96565 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.41465 * 180.02562 * 4 3 2 6 6 C 1.38226 * 119.17042 * 359.97438 * 4 3 2 7 7 C 1.50701 * 120.82230 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47391 * 270.02400 * 7 6 4 9 9 O 1.21275 * 119.99970 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00059 * 179.97438 * 8 7 6 11 11 C 1.47865 * 126.94169 * 359.68826 * 10 8 7 12 12 C 1.55996 * 105.11290 * 181.90748 * 11 10 8 13 13 H 1.09001 * 116.82130 * 159.40344 * 12 11 10 14 14 C 1.57082 * 99.48836 * 33.13367 * 12 11 10 15 15 C 1.49287 * 126.94426 * 180.02562 * 10 8 7 16 16 H 1.09001 * 116.15508 * 15.82303 * 15 10 8 17 17 C 1.56015 * 104.08992 * 246.67606 * 15 10 8 18 18 N 1.47862 * 105.10863 * 288.76588 * 17 15 10 19 19 C 1.36933 * 126.94716 * 181.98107 * 18 17 15 20 20 H 1.08005 * 119.99952 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00502 * 0.02620 * 19 18 17 22 22 N 1.31626 * 119.99380 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00764 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46699 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47042 * 119.99893 * 23 21 19 26 26 H 1.48497 * 109.47227 * 240.00255 * 23 21 19 27 27 C 1.39376 * 118.35551 * 0.02562 * 6 4 3 28 28 O 1.35521 * 120.51764 * 180.02562 * 27 6 4 29 29 N 1.31765 * 119.09047 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47202 * 270.00260 * 1 2 3 31 31 H 1.08998 * 109.46946 * 30.00203 * 1 2 3 32 32 H 1.08999 * 109.47129 * 150.00182 * 1 2 3 33 33 H 1.08995 * 109.47306 * 269.97855 * 5 4 3 34 34 H 1.09007 * 109.46756 * 29.97754 * 5 4 3 35 35 H 1.09000 * 109.47005 * 149.97338 * 5 4 3 36 36 H 1.08997 * 109.47159 * 30.03111 * 7 6 4 37 37 H 1.09006 * 109.47024 * 150.02658 * 7 6 4 38 38 H 1.09000 * 110.32156 * 300.92889 * 11 10 8 39 39 H 1.09002 * 110.31527 * 63.11717 * 11 10 8 40 40 H 1.08995 * 112.37274 * 191.52596 * 14 12 11 41 41 H 1.09004 * 112.36609 * 64.08668 * 14 12 11 42 42 H 1.09001 * 110.31570 * 47.67992 * 17 15 10 43 43 H 1.09007 * 110.31673 * 169.85695 * 17 15 10 44 44 H 0.97000 * 119.99530 * 179.97438 * 22 21 19 45 45 H 0.96699 * 113.99957 * 269.98241 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1478 1.1515 0.0000 4 6 3.4721 1.1948 -0.0005 5 6 4.1921 2.5186 0.0001 6 6 4.1849 0.0105 -0.0005 7 6 5.6919 0.0163 -0.0017 8 6 6.1932 0.0182 -1.4228 9 8 5.4045 0.0156 -2.3440 10 7 7.5181 0.0238 -1.6701 11 6 8.6085 0.0351 -0.6714 12 6 9.9248 0.0876 -1.5069 13 1 10.8183 0.4450 -0.9950 14 6 9.4245 0.9442 -2.7248 15 6 8.1813 0.0269 -3.0076 16 1 7.5503 0.2913 -3.8561 17 6 8.8926 -1.3596 -3.0820 18 7 10.0203 -1.2659 -2.1302 19 6 10.9616 -2.2263 -1.8723 20 1 11.7416 -2.0376 -1.1494 21 6 10.9135 -3.4424 -2.5398 22 7 9.9632 -3.6722 -3.4211 23 14 12.1980 -4.7524 -2.1884 24 1 13.1500 -4.2502 -1.1653 25 1 11.5294 -5.9781 -1.6826 26 1 12.9353 -5.0703 -3.4376 27 6 3.4754 -1.1891 -0.0005 28 8 4.1299 -2.3758 0.0000 29 7 2.1477 -1.1514 -0.0005 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 4.3656 2.8383 -1.0274 34 1 3.5838 3.2628 0.5143 35 1 5.1475 2.4123 0.5139 36 1 6.0522 0.9076 0.5120 37 1 6.0590 -0.8723 0.5119 38 1 8.5281 0.9151 -0.0331 39 1 8.5801 -0.8735 -0.0699 40 1 10.1355 0.9456 -3.5509 41 1 9.1366 1.9537 -2.4314 42 1 8.2082 -2.1527 -2.7810 43 1 9.2631 -1.5412 -4.0910 44 1 9.9298 -4.5218 -3.8878 45 1 4.3200 -2.7205 -0.8832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032780702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:09 Heat of formation + Delta-G solvation = 31.565569 kcal Electronic energy + Delta-G solvation = -29243.133538 eV Core-core repulsion = 25263.078731 eV Total energy + Delta-G solvation = -3980.054808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.47747 -40.10042 -38.09372 -37.66391 -35.00623 -33.71498 -32.85605 -31.74353 -30.49144 -29.26709 -28.99609 -28.61568 -26.32604 -25.25912 -23.60561 -23.09683 -22.03059 -20.53013 -19.92782 -18.81648 -18.50538 -18.11870 -17.34754 -16.49951 -15.97550 -15.79053 -15.39810 -14.87948 -14.65763 -14.43947 -14.13574 -13.98170 -13.54303 -13.48030 -13.30269 -13.18552 -12.81680 -12.58926 -12.36422 -12.22851 -12.08808 -11.98944 -11.80533 -11.68372 -11.38981 -11.09715 -10.93340 -10.86848 -10.72743 -10.64165 -10.34339 -10.31868 -10.11248 -9.74905 -9.69008 -9.35195 -9.08107 -8.76714 -8.11652 -7.00076 -5.83360 -3.18127 0.73209 0.91857 2.88756 3.15876 3.30791 3.33292 3.38394 3.41552 3.63810 3.78918 4.21237 4.36163 4.56988 4.68084 4.74087 4.93149 5.07774 5.08912 5.10767 5.25400 5.28048 5.33703 5.37447 5.45828 5.48855 5.52316 5.55974 5.61247 5.68776 5.79296 5.83649 5.84975 6.08716 6.19579 6.25360 6.31855 6.39844 6.51157 6.59959 6.87761 7.32438 7.35311 7.39953 7.65001 7.96862 8.01019 8.03341 8.44177 9.03672 9.64643 10.32862 11.28728 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.003188 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.989651 B = 8780.147054 C = 9653.262483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.337 3.663 3 N -0.527 5.527 4 C 0.202 3.798 5 C -0.109 4.109 6 C -0.185 4.185 7 C -0.090 4.090 8 C 0.531 3.469 9 O -0.556 6.556 10 N -0.603 5.603 11 C 0.081 3.919 12 C 0.141 3.859 13 H 0.107 0.893 14 C -0.151 4.151 15 C 0.097 3.903 16 H 0.113 0.887 17 C 0.174 3.826 18 N -0.597 5.597 19 C -0.232 4.232 20 H 0.082 0.918 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.380 3.620 28 O -0.475 6.475 29 N -0.543 5.543 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.254 0.746 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 11.958 7.418 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 N -0.244 5.244 4 C 0.057 3.943 5 C -0.166 4.166 6 C -0.191 4.191 7 C -0.131 4.131 8 C 0.319 3.681 9 O -0.435 6.435 10 N -0.336 5.336 11 C -0.044 4.044 12 C 0.032 3.968 13 H 0.125 0.875 14 C -0.191 4.191 15 C -0.005 4.005 16 H 0.131 0.869 17 C 0.049 3.951 18 N -0.321 5.321 19 C -0.360 4.360 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.193 3.807 28 O -0.284 6.284 29 N -0.269 5.269 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -12.246 11.655 7.465 18.481 hybrid contribution 1.654 -1.194 -0.287 2.061 sum -10.592 10.460 7.178 16.527 Atomic orbital electron populations 1.20562 0.85466 1.04240 1.03826 1.22973 0.97843 0.82248 0.89968 1.68084 1.09195 1.30232 1.16872 1.21405 0.89078 0.95234 0.88547 1.20836 0.99654 0.91950 1.04138 1.20956 0.97240 0.93847 1.07040 1.20460 0.90402 1.05993 0.96225 1.19872 0.81044 0.76787 0.90360 1.90680 1.54494 1.51905 1.46419 1.49211 1.04102 1.70857 1.09442 1.23325 0.88947 1.00395 0.91728 1.23167 0.93759 0.87529 0.92351 0.87479 1.24162 0.97521 0.96931 1.00485 1.24362 0.91666 0.99380 0.85096 0.86929 1.21922 0.88379 0.90100 0.94665 1.45249 1.30451 1.10969 1.45442 1.19087 1.04509 0.92720 1.19680 0.90063 1.24824 0.98647 0.97943 0.98814 1.69925 1.33580 1.24084 1.28948 0.86043 0.80532 0.81695 0.77433 1.20439 1.21740 1.21721 1.19186 0.86569 0.85517 0.89411 1.84613 1.74604 1.34293 1.34874 1.67787 1.09607 1.31843 1.17652 0.89620 0.89476 0.89576 0.89200 0.89726 0.90021 0.87624 0.87088 0.92654 0.90871 0.89744 0.91631 0.93518 0.92626 0.93613 0.72555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.32 36.01 0.37 -0.39 16 2 C 0.34 4.62 7.64 -157.23 -1.20 3.42 16 3 N -0.53 -7.36 10.27 -7.05 -0.07 -7.43 16 4 C 0.20 2.72 6.82 -82.31 -0.56 2.16 16 5 C -0.11 -1.08 9.84 36.00 0.35 -0.72 16 6 C -0.18 -2.64 4.42 -104.20 -0.46 -3.10 16 7 C -0.09 -1.18 4.58 -29.03 -0.13 -1.31 16 8 C 0.53 8.77 7.89 -10.98 -0.09 8.69 16 9 O -0.56 -10.96 16.38 5.56 0.09 -10.87 16 10 N -0.60 -10.09 2.95 -156.82 -0.46 -10.55 16 11 C 0.08 1.25 6.01 -1.69 -0.01 1.24 16 12 C 0.14 2.41 5.52 -62.55 -0.35 2.07 16 13 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 14 C -0.15 -2.38 6.80 -22.32 -0.15 -2.53 16 15 C 0.10 1.77 5.24 -62.57 -0.33 1.44 16 16 H 0.11 2.02 8.05 -51.93 -0.42 1.60 16 17 C 0.17 3.99 4.76 -1.68 -0.01 3.98 16 18 N -0.60 -13.64 3.03 -156.34 -0.47 -14.11 16 19 C -0.23 -5.95 10.38 -15.06 -0.16 -6.11 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 22 N -0.92 -26.05 10.56 55.49 0.59 -25.46 16 23 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 C 0.38 5.87 7.81 -16.70 -0.13 5.74 16 28 O -0.48 -6.93 12.75 -18.26 -0.23 -7.16 16 29 N -0.54 -8.37 10.36 -10.78 -0.11 -8.48 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.66 6.07 -51.93 -0.32 0.35 16 36 H 0.11 1.08 6.08 -51.93 -0.32 0.76 16 37 H 0.11 1.45 7.63 -51.93 -0.40 1.06 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 1.23 7.68 -51.93 -0.40 0.83 16 43 H 0.06 1.42 7.46 -51.92 -0.39 1.03 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.41 4.99 9.06 45.56 0.41 5.40 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -33.48 370.27 -8.65 -42.14 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.59 Total: 5.82 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: -2.94 Total: 14.33 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.53 Total: -66.04 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.14 Total: -18.03 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.48 -8.65 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032780702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.701 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds