Wall clock time and date at job start Tue Mar 31 2020 16:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38490 * 120.81706 * 2 1 4 4 C 1.39264 * 119.19045 * 180.02562 * 3 2 1 5 5 C 1.48333 * 119.57111 * 180.02562 * 4 3 2 6 6 O 1.21484 * 120.00139 * 353.32786 * 5 4 3 7 7 N 1.34777 * 119.99721 * 173.32584 * 5 4 3 8 8 C 1.46503 * 120.00271 * 1.30233 * 7 5 4 9 9 C 1.46498 * 119.99776 * 181.30350 * 7 5 4 10 10 H 1.08996 * 110.64397 * 1.69067 * 9 7 5 11 11 C 1.55162 * 110.71964 * 125.02150 * 9 7 5 12 12 C 1.54916 * 101.58117 * 153.86554 * 11 9 7 13 13 N 1.47422 * 104.82954 * 322.99199 * 12 11 9 14 14 C 1.36945 * 125.64647 * 204.08778 * 13 12 11 15 15 H 1.07999 * 120.00052 * 180.02562 * 14 13 12 16 16 C 1.38807 * 119.99892 * 0.04955 * 14 13 12 17 17 N 1.31619 * 120.00203 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00037 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46918 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47237 * 119.99745 * 18 16 14 21 21 H 1.48497 * 109.47039 * 239.99852 * 18 16 14 22 22 C 1.47020 * 108.70761 * 24.13110 * 13 12 11 23 23 N 1.32752 * 120.85863 * 359.97438 * 4 3 2 24 24 C 1.31387 * 121.79949 * 359.97438 * 23 4 3 25 25 C 1.39775 * 120.71779 * 359.72119 * 24 23 4 26 26 C 1.48000 * 120.46351 * 180.28439 * 25 24 23 27 27 N 1.34779 * 120.00393 * 6.54310 * 26 25 24 28 28 O 1.21533 * 119.99784 * 186.54642 * 26 25 24 29 29 H 1.08998 * 109.47444 * 98.39473 * 1 2 3 30 30 H 1.08998 * 109.46892 * 338.38647 * 1 2 3 31 31 H 1.09002 * 109.46766 * 218.39177 * 1 2 3 32 32 H 1.07996 * 120.40705 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46735 * 83.82606 * 8 7 5 34 34 H 1.08996 * 109.47342 * 203.82081 * 8 7 5 35 35 H 1.08997 * 109.47183 * 323.82365 * 8 7 5 36 36 H 1.08996 * 111.00707 * 271.93871 * 11 9 7 37 37 H 1.09000 * 111.00263 * 35.79634 * 11 9 7 38 38 H 1.09001 * 110.36735 * 204.15401 * 12 11 9 39 39 H 1.08994 * 110.45663 * 81.87822 * 12 11 9 40 40 H 0.96998 * 119.99853 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.87863 * 239.52325 * 22 13 12 42 42 H 1.08998 * 109.88716 * 118.35397 * 22 13 12 43 43 H 1.07999 * 119.64254 * 180.02562 * 24 23 4 44 44 H 0.96993 * 119.99396 * 0.02562 * 27 26 25 45 45 H 0.96997 * 119.99909 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2166 1.1894 0.0000 4 6 3.6086 1.1498 -0.0005 5 6 4.3770 2.4186 0.0000 6 8 3.7978 3.4796 -0.1213 7 7 5.7177 2.3944 0.1352 8 6 6.4191 1.1136 0.2528 9 6 6.4737 3.6489 0.1644 10 1 5.8017 4.5043 0.0957 11 6 7.3473 3.7337 1.4440 12 6 8.4878 4.6738 0.9802 13 7 8.7359 4.3016 -0.4245 14 6 9.9059 4.4998 -1.1080 15 1 9.9878 4.1906 -2.1396 16 6 10.9869 5.0976 -0.4748 17 7 10.8872 5.4745 0.7823 18 14 12.5831 5.3674 -1.4069 19 1 12.4381 4.8587 -2.7946 20 1 12.8971 6.8184 -1.4414 21 1 13.6833 4.6389 -0.7256 22 6 7.5189 3.6832 -0.9705 23 7 4.2569 -0.0086 -0.0005 24 6 3.6206 -1.1581 0.0005 25 6 2.2235 -1.2008 0.0074 26 6 1.5125 -2.4988 0.0148 27 7 2.2063 -3.6466 0.1479 28 8 0.3029 -2.5297 -0.0991 29 1 -0.3634 -0.1500 -1.0166 30 1 -0.3633 0.9554 0.3785 31 1 -0.3633 -0.8055 0.6382 32 1 1.6967 2.1360 -0.0004 33 1 6.5984 0.7048 -0.7417 34 1 7.3718 1.2662 0.7600 35 1 5.8091 0.4168 0.8276 36 1 6.7889 4.1748 2.2697 37 1 7.7363 2.7528 1.7172 38 1 9.3829 4.5090 1.5800 39 1 8.1738 5.7154 1.0468 40 1 11.6427 5.8919 1.2248 41 1 7.7365 2.6688 -1.3048 42 1 7.1426 4.2775 -1.8031 43 1 4.1831 -2.0800 0.0008 44 1 3.1716 -3.6218 0.2392 45 1 1.7403 -4.4972 0.1524 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033434575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:02 Heat of formation + Delta-G solvation = -6.247842 kcal Electronic energy + Delta-G solvation = -28251.343521 eV Core-core repulsion = 24269.649001 eV Total energy + Delta-G solvation = -3981.694520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.23089 -41.01586 -39.77598 -38.87486 -36.46306 -35.31346 -34.79784 -33.93472 -32.47803 -31.08962 -29.31098 -29.05331 -27.78268 -26.89481 -25.80533 -23.97477 -22.70883 -22.14036 -21.66163 -20.35854 -19.02737 -18.96674 -18.80219 -17.92194 -17.71419 -16.98995 -16.73301 -16.61937 -16.18155 -16.08103 -15.87842 -15.67615 -15.15885 -14.71166 -14.60660 -14.42101 -14.18459 -13.98539 -13.89448 -13.77124 -13.67036 -13.42248 -13.25543 -12.97958 -12.79487 -12.71746 -12.39987 -12.16875 -11.97919 -11.84308 -11.45787 -11.38021 -11.20340 -10.83862 -10.76803 -10.58000 -10.42404 -10.25478 -9.66219 -8.92380 -7.78156 -5.23888 -0.90731 0.02309 1.25762 1.48108 1.49270 1.59490 1.74084 1.94474 2.39800 2.50016 2.67918 2.86773 3.32320 3.40087 3.52393 3.64054 3.70181 3.81570 3.89100 3.91337 3.95368 4.20462 4.36947 4.44786 4.54879 4.57195 4.59493 4.69356 4.74083 4.84166 4.85870 4.96841 5.00812 5.05449 5.16956 5.28512 5.40760 5.45345 5.54226 5.58017 5.76920 5.87383 6.25429 6.28292 6.35680 6.49111 6.93594 7.09029 7.24117 7.74364 8.38108 9.23946 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.002334 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.568939 B =11993.414616 C =12549.821663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.012 3.988 3 C -0.124 4.124 4 C 0.100 3.900 5 C 0.558 3.442 6 O -0.570 6.570 7 N -0.577 5.577 8 C 0.077 3.923 9 C 0.137 3.863 10 H 0.090 0.910 11 C -0.132 4.132 12 C 0.157 3.843 13 N -0.621 5.621 14 C -0.239 4.239 15 H 0.080 0.920 16 C -0.064 4.064 17 N -0.948 5.948 18 Si 0.982 3.018 19 H -0.268 1.268 20 H -0.294 1.294 21 H -0.287 1.287 22 C 0.132 3.868 23 N -0.463 5.463 24 C 0.145 3.855 25 C -0.180 4.180 26 C 0.569 3.431 27 N -0.825 5.825 28 O -0.564 6.564 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.083 0.917 39 H -0.012 1.012 40 H 0.249 0.751 41 H 0.040 0.960 42 H 0.014 0.986 43 H 0.211 0.789 44 H 0.418 0.582 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.929 -21.364 1.447 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.003 3.997 3 C -0.145 4.145 4 C -0.035 4.035 5 C 0.345 3.655 6 O -0.449 6.449 7 N -0.306 5.306 8 C -0.064 4.064 9 C 0.033 3.967 10 H 0.108 0.892 11 C -0.171 4.171 12 C 0.031 3.969 13 N -0.348 5.348 14 C -0.367 4.367 15 H 0.098 0.902 16 C -0.257 4.257 17 N -0.598 5.598 18 Si 0.811 3.189 19 H -0.192 1.192 20 H -0.221 1.221 21 H -0.214 1.214 22 C 0.006 3.994 23 N -0.175 5.175 24 C -0.016 4.016 25 C -0.186 4.186 26 C 0.354 3.646 27 N -0.390 5.390 28 O -0.445 6.445 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.170 0.830 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.006 0.994 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.228 0.772 44 H 0.250 0.750 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -17.840 -20.543 1.310 27.240 hybrid contribution 0.444 0.536 -0.482 0.846 sum -17.396 -20.008 0.828 26.526 Atomic orbital electron populations 1.21063 0.87834 1.04136 1.04256 1.20662 0.98385 0.90857 0.89768 1.22036 0.93126 1.00145 0.99231 1.21005 0.91750 0.91862 0.98904 1.18385 0.82120 0.88019 0.76941 1.90751 1.69964 1.32045 1.52179 1.47779 1.05590 1.08389 1.68800 1.22505 0.97623 0.83074 1.03173 1.21940 0.92177 0.86605 0.96025 0.89232 1.23206 0.96572 1.01217 0.96133 1.21723 0.96530 0.92908 0.85695 1.44706 1.09436 1.70524 1.10131 1.19460 0.88908 1.33071 0.95293 0.90183 1.25636 1.01598 1.01026 0.97439 1.70024 1.30898 1.47336 1.11515 0.84952 0.79104 0.76903 0.77984 1.19218 1.22092 1.21414 1.21563 0.86789 0.96519 0.94527 1.68114 1.38921 0.97855 1.12594 1.23742 0.90102 0.97229 0.90553 1.21128 0.95784 0.94272 1.07408 1.17971 0.86331 0.84527 0.75790 1.43568 1.12739 1.07852 1.74828 1.90801 1.15073 1.87563 1.51016 0.89667 0.90177 0.89055 0.83002 0.92045 0.92006 0.85889 0.90178 0.89985 0.89935 0.99428 0.94150 0.94227 0.96758 0.77229 0.74979 0.74962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.76 71.24 0.62 -1.19 16 2 C 0.01 0.21 5.95 -19.42 -0.12 0.09 16 3 C -0.12 -2.62 9.29 22.58 0.21 -2.41 16 4 C 0.10 2.40 6.63 41.94 0.28 2.68 16 5 C 0.56 17.57 7.67 86.93 0.67 18.23 16 6 O -0.57 -21.52 15.70 -3.66 -0.06 -21.58 16 7 N -0.58 -18.10 2.88 -818.81 -2.36 -20.46 16 8 C 0.08 1.93 8.01 127.77 1.02 2.96 16 9 C 0.14 5.18 3.36 46.18 0.16 5.34 16 10 H 0.09 3.68 6.99 -2.39 -0.02 3.66 16 11 C -0.13 -5.04 6.59 31.99 0.21 -4.83 16 12 C 0.16 7.81 5.89 86.86 0.51 8.33 16 13 N -0.62 -32.54 3.39 -691.99 -2.35 -34.89 16 14 C -0.24 -13.44 10.27 84.03 0.86 -12.58 16 15 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 16 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 17 N -0.95 -56.13 10.09 21.65 0.22 -55.91 16 18 Si 0.98 45.45 29.55 68.60 2.03 47.47 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 22 C 0.13 5.77 6.88 86.73 0.60 6.36 16 23 N -0.46 -8.53 6.01 -183.89 -1.11 -9.64 16 24 C 0.14 1.64 10.69 85.13 0.91 2.55 16 25 C -0.18 -2.52 5.90 -19.93 -0.12 -2.64 16 26 C 0.57 7.31 8.00 86.83 0.69 8.00 16 27 N -0.82 -3.00 8.83 -175.49 -1.55 -4.55 16 28 O -0.56 -11.31 14.36 -3.82 -0.05 -11.37 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.03 8.05 -2.39 -0.02 1.02 16 31 H 0.09 1.58 6.08 -2.39 -0.01 1.56 16 32 H 0.15 3.25 7.64 -2.91 -0.02 3.22 16 33 H 0.06 1.48 8.10 -2.38 -0.02 1.46 16 34 H 0.06 1.65 6.14 -2.39 -0.01 1.64 16 35 H 0.12 2.52 5.29 -2.54 -0.01 2.50 16 36 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.08 2.90 6.15 -2.39 -0.01 2.89 16 38 H 0.08 4.59 5.87 -2.39 -0.01 4.58 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.04 1.65 7.08 -2.39 -0.02 1.63 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.21 0.27 6.47 -2.91 -0.02 0.25 16 44 H 0.42 -1.06 6.93 -92.71 -0.64 -1.70 16 45 H 0.42 0.64 8.93 -92.71 -0.83 -0.19 16 Total: -1.00 -76.59 359.95 1.34 -75.25 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -0.41 Total: 7.96 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 6.98 Total: 27.71 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -7.15 Total: -125.45 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.11 Total: -32.94 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.59 1.34 -75.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033434575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.002 kcal (2) G-P(sol) polarization free energy of solvation -76.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds