Wall clock time and date at job start Tue Mar 31 2020 17:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32210 * 120.50847 * 2 1 4 4 C 1.31912 * 121.14407 * 180.26519 * 3 2 1 5 5 N 1.31757 * 122.19140 * 359.72156 * 4 3 2 6 6 C 1.32744 * 120.87518 * 0.02562 * 5 4 3 7 7 O 1.35273 * 120.62130 * 180.02562 * 6 5 4 8 8 C 1.39767 * 120.50893 * 179.73643 * 2 1 3 9 9 C 1.47530 * 120.98042 * 0.02562 * 8 2 1 10 10 O 1.21587 * 120.00630 * 269.72238 * 9 8 2 11 11 N 1.34775 * 120.00032 * 89.71903 * 9 8 2 12 12 C 1.46530 * 120.97747 * 0.02562 * 11 9 8 13 13 C 1.51788 * 110.13282 * 233.78140 * 12 11 9 14 14 C 1.49511 * 115.06730 * 318.37606 * 13 12 11 15 15 H 1.08997 * 105.18831 * 156.93437 * 14 13 12 16 16 C 1.52642 * 117.06777 * 40.18305 * 14 13 12 17 17 H 1.08995 * 112.17063 * 83.00874 * 16 14 13 18 18 C 1.56119 * 101.81647 * 203.13503 * 16 14 13 19 19 C 1.55096 * 101.08181 * 37.62558 * 18 16 14 20 20 N 1.46254 * 114.17052 * 272.10997 * 14 13 12 21 21 C 1.36931 * 125.96655 * 315.60260 * 20 14 13 22 22 H 1.08011 * 119.99552 * 343.08769 * 21 20 14 23 23 C 1.38813 * 120.00588 * 163.08991 * 21 20 14 24 24 N 1.31615 * 119.99840 * 331.89345 * 23 21 20 25 25 Si 1.86794 * 120.00231 * 151.89616 * 23 21 20 26 26 H 1.48501 * 109.47314 * 269.99988 * 25 23 21 27 27 H 1.48498 * 109.47456 * 149.99623 * 25 23 21 28 28 H 1.48506 * 109.47201 * 29.99714 * 25 23 21 29 29 C 1.46170 * 120.96353 * 180.32224 * 11 9 8 30 30 H 1.08996 * 109.46858 * 270.26601 * 1 2 3 31 31 H 1.08997 * 109.46602 * 30.26418 * 1 2 3 32 32 H 1.09002 * 109.46676 * 150.26427 * 1 2 3 33 33 H 1.07996 * 118.90889 * 179.74919 * 4 3 2 34 34 H 0.96696 * 114.00189 * 269.97523 * 7 6 5 35 35 H 1.08996 * 109.36556 * 113.56966 * 12 11 9 36 36 H 1.09003 * 109.35635 * 353.97846 * 12 11 9 37 37 H 1.08998 * 108.36159 * 196.92994 * 13 12 11 38 38 H 1.09000 * 108.36257 * 79.82750 * 13 12 11 39 39 H 1.09003 * 111.09463 * 279.67644 * 18 16 14 40 40 H 1.08995 * 111.09914 * 155.57961 * 18 16 14 41 41 H 1.09000 * 110.35380 * 204.07892 * 19 18 16 42 42 H 1.09003 * 110.44118 * 81.84875 * 19 18 16 43 43 H 0.97007 * 120.00027 * 353.97080 * 24 23 21 44 44 H 1.08999 * 109.51705 * 0.99382 * 29 11 9 45 45 H 1.09002 * 109.04136 * 241.09194 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1537 -0.0052 5 7 4.2116 0.0465 -0.0053 6 6 3.6235 -1.1435 -0.0005 7 8 4.3618 -2.2770 0.0000 8 6 2.2166 -1.2041 0.0055 9 6 1.5124 -2.5005 0.0109 10 8 1.2263 -3.0327 1.0661 11 7 1.1862 -3.0950 -1.1538 12 6 1.5210 -2.4732 -2.4377 13 6 0.2770 -2.3501 -3.2987 14 6 -0.6301 -3.5383 -3.2747 15 1 -1.6089 -3.1563 -3.5647 16 6 -0.8419 -4.2235 -1.9272 17 1 -1.6053 -3.7265 -1.3286 18 6 -1.2759 -5.6584 -2.3629 19 6 -0.3688 -5.8812 -3.6010 20 7 -0.3012 -4.5629 -4.2653 21 6 0.0192 -4.3392 -5.5776 22 1 -0.2141 -3.3895 -6.0362 23 6 0.6437 -5.3330 -6.3188 24 7 1.4089 -6.2194 -5.7180 25 14 0.3982 -5.4121 -8.1689 26 1 -0.7765 -6.2669 -8.4763 27 1 1.6099 -5.9887 -8.8048 28 1 0.1660 -4.0435 -8.6964 29 6 0.4823 -4.3760 -1.1730 30 1 -0.3633 0.0048 1.0276 31 1 -0.3632 0.8876 -0.5179 32 1 -0.3633 -0.8924 -0.5097 33 1 4.0088 2.1048 -0.0092 34 1 4.5734 -2.6089 -0.8832 35 1 2.2591 -3.0864 -2.9546 36 1 1.9378 -1.4817 -2.2611 37 1 0.5882 -2.1764 -4.3287 38 1 -0.2877 -1.4801 -2.9637 39 1 -2.3300 -5.6825 -2.6394 40 1 -1.0601 -6.3876 -1.5821 41 1 -0.8130 -6.6197 -4.2685 42 1 0.6262 -6.2011 -3.2914 43 1 1.6072 -6.1278 -4.7729 44 1 0.2845 -4.6982 -0.1507 45 1 1.1049 -5.1163 -1.6754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036796324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:17 Heat of formation + Delta-G solvation = 8.344422 kcal Electronic energy + Delta-G solvation = -30206.030636 eV Core-core repulsion = 26224.968884 eV Total energy + Delta-G solvation = -3981.061752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75698 -40.12195 -38.43606 -38.00131 -35.48370 -34.48821 -33.14686 -32.16030 -32.01417 -29.58757 -28.87686 -28.00283 -26.04853 -24.67475 -23.93010 -23.12263 -22.81235 -20.49661 -20.22956 -19.20117 -18.66950 -18.34111 -17.62471 -16.94328 -16.59636 -16.23688 -15.44800 -15.36880 -14.71058 -14.52797 -14.35998 -14.29401 -13.84564 -13.67562 -13.35009 -13.15272 -13.05219 -12.96942 -12.78626 -12.75699 -12.34857 -12.03140 -11.69689 -11.50649 -11.29409 -11.12317 -10.69932 -10.66022 -10.42873 -10.39116 -10.30609 -10.17528 -10.06835 -9.99944 -9.72799 -9.57023 -9.56166 -8.55691 -8.44613 -7.01408 -6.17970 -3.24435 0.30537 0.58019 2.35147 2.85585 3.00934 3.28497 3.45045 3.47239 3.63032 3.64337 3.92438 4.22698 4.48847 4.62896 4.79775 4.87409 4.97353 5.01736 5.09659 5.18260 5.23541 5.24330 5.29502 5.36285 5.49790 5.59035 5.62542 5.67379 5.81415 5.89196 5.97884 6.05153 6.07548 6.20936 6.31571 6.40160 6.46405 6.51810 6.72316 6.76906 6.91881 6.95715 7.00934 7.36368 7.66301 7.71769 8.01332 8.39043 8.92764 9.71452 10.29552 11.13262 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.003837 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.029781 B = 7295.195580 C = 7788.183903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.227 3.773 3 N -0.525 5.525 4 C 0.332 3.668 5 N -0.541 5.541 6 C 0.397 3.603 7 O -0.467 6.467 8 C -0.240 4.240 9 C 0.577 3.423 10 O -0.529 6.529 11 N -0.591 5.591 12 C 0.117 3.883 13 C -0.133 4.133 14 C 0.170 3.830 15 H 0.011 0.989 16 C -0.106 4.106 17 H 0.081 0.919 18 C -0.132 4.132 19 C 0.141 3.859 20 N -0.590 5.590 21 C -0.334 4.334 22 H 0.065 0.935 23 C -0.022 4.022 24 N -0.914 5.914 25 Si 1.065 2.935 26 H -0.293 1.293 27 H -0.291 1.291 28 H -0.293 1.293 29 C 0.119 3.881 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.206 0.794 34 H 0.413 0.587 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 11.100 9.731 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 N -0.241 5.241 4 C 0.045 3.955 5 N -0.266 5.266 6 C 0.209 3.791 7 O -0.276 6.276 8 C -0.249 4.249 9 C 0.362 3.638 10 O -0.405 6.405 11 N -0.322 5.322 12 C -0.005 4.005 13 C -0.173 4.173 14 C 0.063 3.937 15 H 0.029 0.971 16 C -0.126 4.126 17 H 0.099 0.901 18 C -0.171 4.171 19 C 0.016 3.984 20 N -0.316 5.316 21 C -0.462 4.462 22 H 0.083 0.917 23 C -0.224 4.224 24 N -0.555 5.555 25 Si 0.895 3.105 26 H -0.221 1.221 27 H -0.217 1.217 28 H -0.219 1.219 29 C -0.002 4.002 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.223 0.777 34 H 0.275 0.725 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.627 10.768 9.375 14.291 hybrid contribution -0.410 0.167 0.757 0.876 sum 0.217 10.935 10.131 14.908 Atomic orbital electron populations 1.20939 0.86906 1.04841 1.04509 1.21799 0.97788 0.85911 0.86450 1.68297 1.10199 1.29289 1.16298 1.24974 0.86255 0.96118 0.88165 1.68059 1.42605 0.98635 1.17275 1.19367 0.85520 0.85996 0.88213 1.84664 1.72500 1.35881 1.34517 1.21712 0.95173 0.96976 1.11071 1.17547 0.78851 0.83398 0.83987 1.90802 1.54552 1.64543 1.30622 1.47835 1.56544 1.22428 1.05428 1.21308 0.98833 0.97110 0.83265 1.21212 0.96038 0.98931 1.01084 1.19506 0.96003 0.89687 0.88499 0.97125 1.22345 0.96240 0.97790 0.96225 0.90056 1.23081 1.00407 0.94939 0.98680 1.21654 0.95778 0.89363 0.91643 1.44661 1.81781 0.99411 1.05760 1.19664 1.38212 1.03924 0.84413 0.91739 1.25692 0.94760 0.96204 1.05740 1.70774 1.31519 1.39906 1.13287 0.83507 0.76237 0.75365 0.75376 1.22069 1.21694 1.21925 1.21663 0.92946 0.83908 1.01732 0.88743 0.88868 0.89716 0.77721 0.72550 0.90756 0.91783 0.89464 0.93182 0.91369 0.91466 0.93181 0.95465 0.91990 0.89302 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.85 36.01 0.35 -0.80 16 2 C 0.23 2.76 6.73 -81.85 -0.55 2.21 16 3 N -0.52 -6.03 10.36 -10.52 -0.11 -6.14 16 4 C 0.33 3.45 12.27 -92.08 -1.13 2.32 16 5 N -0.54 -6.72 10.45 -14.32 -0.15 -6.87 16 6 C 0.40 5.29 7.85 -16.18 -0.13 5.16 16 7 O -0.47 -5.90 13.10 -17.51 -0.23 -6.13 16 8 C -0.24 -3.27 3.69 -104.56 -0.39 -3.66 16 9 C 0.58 8.84 5.40 -12.47 -0.07 8.77 16 10 O -0.53 -9.73 16.52 5.29 0.09 -9.64 16 11 N -0.59 -8.71 2.94 -175.79 -0.52 -9.22 16 12 C 0.12 1.70 6.39 -4.64 -0.03 1.67 16 13 C -0.13 -2.15 5.60 -29.07 -0.16 -2.32 16 14 C 0.17 3.14 2.63 -69.97 -0.18 2.95 16 15 H 0.01 0.22 8.06 -51.93 -0.42 -0.20 16 16 C -0.11 -1.67 3.72 -89.05 -0.33 -2.00 16 17 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.13 -2.17 6.47 -23.95 -0.15 -2.32 16 19 C 0.14 2.99 4.90 -2.24 -0.01 2.98 16 20 N -0.59 -13.35 3.21 -165.71 -0.53 -13.88 16 21 C -0.33 -8.58 9.06 -15.06 -0.14 -8.72 16 22 H 0.06 1.67 7.71 -52.48 -0.40 1.26 16 23 C -0.02 -0.57 5.14 -17.43 -0.09 -0.66 16 24 N -0.91 -25.86 12.99 55.49 0.72 -25.14 16 25 Si 1.07 24.18 30.00 -169.99 -5.10 19.08 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 29 C 0.12 1.85 5.50 -4.14 -0.02 1.83 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.92 7.18 -51.93 -0.37 0.55 16 33 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.41 3.45 9.06 45.56 0.41 3.87 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.82 6.23 -51.93 -0.32 0.50 16 37 H 0.09 1.61 6.95 -51.93 -0.36 1.25 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 41 H 0.05 1.19 8.09 -51.93 -0.42 0.77 16 42 H 0.03 0.62 5.65 -51.93 -0.29 0.33 16 43 H 0.27 7.55 6.01 -40.82 -0.25 7.30 16 44 H 0.09 1.37 6.98 -51.93 -0.36 1.01 16 45 H 0.08 1.33 6.49 -51.93 -0.34 0.99 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -32.47 359.39 -8.74 -41.20 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.30 Total: 3.90 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -3.03 Total: 7.41 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.59 Total: -61.25 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.14 Total: -15.77 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.10 Total: 19.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.47 -8.74 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036796324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.549 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds