Wall clock time and date at job start Tue Mar 31 2020 17:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32222 * 120.50884 * 2 1 4 4 C 1.31906 * 121.14221 * 180.02562 * 3 2 1 5 5 N 1.31755 * 122.19466 * 0.02562 * 4 3 2 6 6 C 1.32753 * 120.87296 * 359.68232 * 5 4 3 7 7 O 1.35272 * 120.61475 * 180.31267 * 6 5 4 8 8 C 1.39768 * 120.51107 * 180.02562 * 2 1 3 9 9 C 1.47540 * 120.97567 * 359.95338 * 8 2 1 10 10 O 1.21584 * 119.99780 * 90.00446 * 9 8 2 11 11 N 1.34780 * 119.99813 * 269.99465 * 9 8 2 12 12 C 1.46595 * 119.68070 * 0.03358 * 11 9 8 13 13 C 1.53963 * 110.56760 * 227.79624 * 12 11 9 14 14 C 1.51811 * 107.28167 * 308.72968 * 13 12 11 15 15 H 1.09000 * 109.29403 * 306.56606 * 14 13 12 16 16 C 1.55676 * 107.48489 * 65.12393 * 14 13 12 17 17 H 1.08996 * 112.49115 * 50.67533 * 16 14 13 18 18 C 1.53743 * 100.09888 * 168.92795 * 16 14 13 19 19 C 1.55297 * 101.83998 * 320.73343 * 18 16 14 20 20 N 1.45459 * 117.16836 * 181.63679 * 14 13 12 21 21 C 1.36945 * 126.40667 * 31.14213 * 20 14 13 22 22 H 1.08000 * 119.99441 * 359.71550 * 21 20 14 23 23 C 1.38811 * 120.00031 * 179.71408 * 21 20 14 24 24 N 1.31619 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46722 * 90.00437 * 25 23 21 27 27 H 1.48497 * 109.47157 * 210.00127 * 25 23 21 28 28 H 1.48494 * 109.47346 * 330.00290 * 25 23 21 29 29 C 1.47715 * 119.68035 * 180.02562 * 11 9 8 30 30 H 1.09004 * 109.47139 * 269.97845 * 1 2 3 31 31 H 1.09004 * 109.47506 * 29.97404 * 1 2 3 32 32 H 1.08999 * 109.47437 * 149.97775 * 1 2 3 33 33 H 1.07995 * 118.90143 * 180.02562 * 4 3 2 34 34 H 0.96708 * 113.99574 * 270.25953 * 7 6 5 35 35 H 1.08996 * 109.26046 * 348.07299 * 12 11 9 36 36 H 1.08996 * 109.26084 * 107.55583 * 12 11 9 37 37 H 1.09001 * 109.88133 * 68.40744 * 13 12 11 38 38 H 1.08998 * 109.87706 * 189.41377 * 13 12 11 39 39 H 1.09000 * 110.95222 * 202.60599 * 18 16 14 40 40 H 1.08998 * 110.96074 * 78.86951 * 18 16 14 41 41 H 1.09001 * 109.91882 * 263.13411 * 19 18 16 42 42 H 1.08998 * 109.91870 * 141.82908 * 19 18 16 43 43 H 0.96998 * 120.00243 * 179.97438 * 24 23 21 44 44 H 1.09010 * 110.06869 * 8.75789 * 29 11 9 45 45 H 1.08997 * 110.07337 * 247.18469 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1537 -0.0005 5 7 4.2115 0.0466 -0.0015 6 6 3.6233 -1.1435 0.0042 7 8 4.3618 -2.2769 0.0095 8 6 2.2166 -1.2041 -0.0005 9 6 1.5123 -2.5006 -0.0001 10 8 1.2215 -3.0347 -1.0529 11 7 1.1915 -3.0928 1.1674 12 6 1.5452 -2.4422 2.4326 13 6 2.2158 -3.4461 3.3880 14 6 1.3145 -4.6652 3.4665 15 1 0.3058 -4.3507 3.7343 16 6 1.2919 -5.3219 2.0552 17 1 2.2926 -5.4855 1.6555 18 6 0.5987 -6.6531 2.3884 19 6 1.2341 -7.0088 3.7600 20 7 1.7312 -5.7435 4.3493 21 6 2.4446 -5.6132 5.5110 22 1 2.7562 -4.6351 5.8464 23 6 2.7671 -6.7383 6.2573 24 7 2.3877 -7.9304 5.8483 25 14 3.7408 -6.5605 7.8415 26 1 2.8048 -6.3790 8.9801 27 1 4.5563 -7.7820 8.0611 28 1 4.6353 -5.3794 7.7429 29 6 0.4869 -4.3910 1.1596 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 4.0087 2.1049 -0.0001 34 1 4.5797 -2.6084 -0.8725 35 1 2.2330 -1.6203 2.2343 36 1 0.6419 -2.0503 2.9001 37 1 3.1949 -3.7286 3.0013 38 1 2.3224 -3.0015 4.3775 39 1 0.8329 -7.4120 1.6419 40 1 -0.4790 -6.5189 2.4811 41 1 2.0625 -7.7025 3.6168 42 1 0.4830 -7.4528 4.4133 43 1 2.6134 -8.7166 6.3696 44 1 0.4476 -4.7893 0.1456 45 1 -0.5217 -4.2716 1.5551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036796325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:19 Heat of formation + Delta-G solvation = -12.687380 kcal Electronic energy + Delta-G solvation = -29742.315817 eV Core-core repulsion = 25760.342058 eV Total energy + Delta-G solvation = -3981.973760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.67029 -41.22655 -39.66606 -38.89008 -36.88425 -35.36645 -34.55911 -33.17111 -33.06972 -31.31988 -30.02599 -29.43973 -26.89864 -26.35398 -24.68778 -23.94693 -23.84858 -21.92976 -21.50645 -20.62414 -20.05724 -19.20369 -18.91437 -18.08903 -17.50119 -17.19729 -16.94936 -16.32256 -16.13034 -15.87355 -15.61170 -15.32791 -15.28451 -14.72232 -14.53133 -14.43176 -14.15594 -13.96172 -13.80080 -13.68564 -13.35196 -13.19344 -13.12707 -13.09050 -12.71262 -12.52829 -12.45122 -12.17821 -12.02346 -11.80131 -11.63271 -11.53162 -11.49156 -11.10913 -11.02914 -10.70755 -10.57357 -10.52307 -9.83329 -8.87189 -7.83710 -5.17822 -0.56688 -0.27782 1.21872 1.45309 1.46549 1.54750 1.77217 2.13401 2.47275 2.49954 2.89156 3.09864 3.15796 3.35109 3.46021 3.72002 3.77244 3.82586 3.99438 4.06127 4.13229 4.16817 4.21066 4.34792 4.44616 4.57926 4.63014 4.63475 4.67622 4.72148 4.78693 4.85547 4.89984 5.00888 5.08496 5.16737 5.17348 5.38041 5.50403 5.53461 5.64350 5.67445 5.77739 6.15634 6.21210 6.27236 6.83755 6.85561 7.09881 7.79960 8.47906 9.27955 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.003528 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.166777 B = 7934.454906 C = 8742.763898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.228 3.772 3 N -0.530 5.530 4 C 0.338 3.662 5 N -0.557 5.557 6 C 0.393 3.607 7 O -0.482 6.482 8 C -0.262 4.262 9 C 0.585 3.415 10 O -0.562 6.562 11 N -0.590 5.590 12 C 0.127 3.873 13 C -0.121 4.121 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.109 4.109 17 H 0.060 0.940 18 C -0.120 4.120 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.230 4.230 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.972 3.028 26 H -0.286 1.286 27 H -0.298 1.298 28 H -0.270 1.270 29 C 0.135 3.865 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.428 0.572 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.015 0.985 42 H 0.005 0.995 43 H 0.245 0.755 44 H 0.095 0.905 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 18.057 -13.983 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 N -0.246 5.246 4 C 0.052 3.948 5 N -0.283 5.283 6 C 0.205 3.795 7 O -0.293 6.293 8 C -0.271 4.271 9 C 0.371 3.629 10 O -0.442 6.442 11 N -0.320 5.320 12 C 0.004 3.996 13 C -0.160 4.160 14 C 0.053 3.947 15 H 0.049 0.951 16 C -0.130 4.130 17 H 0.078 0.922 18 C -0.158 4.158 19 C 0.057 3.943 20 N -0.341 5.341 21 C -0.359 4.359 22 H 0.102 0.898 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.801 3.199 26 H -0.213 1.213 27 H -0.225 1.225 28 H -0.195 1.195 29 C 0.013 3.987 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.259 0.741 34 H 0.292 0.708 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.473 18.464 -13.758 23.287 hybrid contribution 0.811 -1.612 0.770 1.962 sum -2.663 16.852 -12.988 21.442 Atomic orbital electron populations 1.21017 0.85266 1.05256 1.05534 1.22188 0.98874 0.85481 0.85297 1.68429 1.10545 1.28837 1.16764 1.25784 0.86216 0.96875 0.85953 1.68171 1.43038 0.98878 1.18200 1.19557 0.85721 0.86365 0.87868 1.84636 1.72495 1.36076 1.36096 1.21661 0.95103 0.96737 1.13584 1.17740 0.77811 0.83766 0.83583 1.90787 1.55993 1.65695 1.31706 1.48254 1.56302 1.21799 1.05660 1.21671 1.00680 0.94190 0.83010 1.21813 0.98726 0.96226 0.99221 1.20978 0.95675 0.89003 0.89082 0.95084 1.22508 0.99134 0.95498 0.95827 0.92182 1.22586 1.00060 0.96465 0.96723 1.21312 0.94955 0.87617 0.90419 1.44489 1.63501 1.02740 1.23358 1.19370 1.25814 0.93414 0.97307 0.89810 1.25580 1.02799 0.95265 1.02390 1.70156 1.52148 0.97634 1.40253 0.85171 0.78231 0.76725 0.79811 1.21269 1.22456 1.19477 1.21636 0.95224 0.80652 1.01172 0.87156 0.87419 0.90382 0.74112 0.70766 0.90618 0.88695 0.93414 0.90983 0.90367 0.89813 0.96688 0.97630 0.94596 0.88715 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.85 71.24 0.70 -0.87 16 2 C 0.23 4.37 6.86 42.87 0.29 4.67 16 3 N -0.53 -9.55 10.36 -187.21 -1.94 -11.49 16 4 C 0.34 5.56 12.27 180.86 2.22 7.78 16 5 N -0.56 -12.06 10.45 -312.05 -3.26 -15.32 16 6 C 0.39 9.31 7.57 85.18 0.65 9.96 16 7 O -0.48 -11.48 13.10 -85.57 -1.12 -12.60 16 8 C -0.26 -6.03 3.66 -19.83 -0.07 -6.10 16 9 C 0.58 15.36 5.37 86.70 0.47 15.82 16 10 O -0.56 -17.65 16.46 -3.98 -0.07 -17.71 16 11 N -0.59 -15.05 3.00 -821.84 -2.47 -17.51 16 12 C 0.13 3.13 6.22 86.69 0.54 3.67 16 13 C -0.12 -4.00 5.48 30.53 0.17 -3.84 16 14 C 0.16 6.06 2.59 45.72 0.12 6.17 16 15 H 0.03 1.16 7.94 -2.39 -0.02 1.14 16 16 C -0.11 -3.64 2.86 -9.88 -0.03 -3.67 16 17 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 18 C -0.12 -4.18 6.53 31.63 0.21 -3.97 16 19 C 0.18 8.86 5.45 86.85 0.47 9.33 16 20 N -0.62 -30.75 3.35 -668.76 -2.24 -32.98 16 21 C -0.23 -12.61 9.88 84.03 0.83 -11.78 16 22 H 0.08 4.36 7.21 -2.91 -0.02 4.34 16 23 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 24 N -0.95 -57.49 10.44 21.65 0.23 -57.26 16 25 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.13 3.51 5.95 85.88 0.51 4.03 16 30 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.08 1.23 7.18 -2.39 -0.02 1.22 16 33 H 0.24 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.43 6.49 9.06 -74.05 -0.67 5.82 16 35 H 0.08 1.80 6.06 -2.39 -0.01 1.79 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 38 H 0.07 2.43 7.62 -2.39 -0.02 2.42 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.08 2.54 8.11 -2.39 -0.02 2.52 16 41 H 0.01 0.83 7.21 -2.39 -0.02 0.81 16 42 H 0.01 0.30 7.77 -2.39 -0.02 0.28 16 43 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.09 2.51 6.99 -2.38 -0.02 2.49 16 45 H 0.10 2.14 8.08 -2.39 -0.02 2.12 16 Total: -1.00 -74.54 362.51 -0.94 -75.48 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.36 Total: 13.72 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 7.54 Total: 27.82 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -9.68 Total: -134.57 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.19 Total: -30.31 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -74.54 -0.94 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036796325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.795 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds