Wall clock time and date at job start Tue Mar 31 2020 17:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32216 * 120.50975 * 2 1 4 4 C 1.31903 * 121.14279 * 179.97438 * 3 2 1 5 5 N 1.31759 * 122.19671 * 359.97438 * 4 3 2 6 6 C 1.32748 * 120.86828 * 359.76397 * 5 4 3 7 7 O 1.35276 * 120.61272 * 180.24548 * 6 5 4 8 8 C 1.39765 * 120.51004 * 179.97438 * 2 1 3 9 9 C 1.47544 * 120.97994 * 359.97438 * 8 2 1 10 10 O 1.21589 * 119.99580 * 90.00646 * 9 8 2 11 11 N 1.34780 * 120.00174 * 270.00786 * 9 8 2 12 12 C 1.46941 * 120.43786 * 179.97438 * 11 9 8 13 13 C 1.53596 * 108.54811 * 125.74970 * 12 11 9 14 14 H 1.09000 * 110.59694 * 172.12723 * 13 12 11 15 15 C 1.53369 * 108.68300 * 294.31772 * 13 12 11 16 16 C 1.53011 * 109.25396 * 60.26407 * 15 13 12 17 17 C 1.53018 * 109.79665 * 60.57909 * 16 15 13 18 18 C 1.53376 * 109.26927 * 299.43552 * 17 16 15 19 19 H 1.08994 * 111.08332 * 177.79981 * 18 17 16 20 20 C 1.46941 * 120.44143 * 359.97351 * 11 9 8 21 21 N 1.47564 * 107.98368 * 56.34443 * 18 17 16 22 22 C 1.36940 * 121.60684 * 122.30223 * 21 18 17 23 23 H 1.07995 * 120.00057 * 27.50034 * 22 21 18 24 24 C 1.38810 * 119.99618 * 207.50384 * 22 21 18 25 25 N 1.31617 * 120.00364 * 18.60969 * 24 22 21 26 26 Si 1.86804 * 119.99903 * 198.61643 * 24 22 21 27 27 H 1.48502 * 109.47288 * 89.99842 * 26 24 22 28 28 H 1.48498 * 109.47105 * 209.99933 * 26 24 22 29 29 H 1.48503 * 109.46840 * 329.99605 * 26 24 22 30 30 H 1.09001 * 109.46995 * 270.01416 * 1 2 3 31 31 H 1.09002 * 109.47176 * 30.01970 * 1 2 3 32 32 H 1.09002 * 109.47035 * 150.01515 * 1 2 3 33 33 H 1.08001 * 118.90545 * 180.02562 * 4 3 2 34 34 H 0.96703 * 114.00142 * 270.24242 * 7 6 5 35 35 H 1.09001 * 109.62516 * 245.46492 * 12 11 9 36 36 H 1.08995 * 109.62517 * 6.02752 * 12 11 9 37 37 H 1.09001 * 109.50680 * 180.19548 * 15 13 12 38 38 H 1.08997 * 109.51359 * 300.32948 * 15 13 12 39 39 H 1.09001 * 109.42223 * 180.67603 * 16 15 13 40 40 H 1.09004 * 109.41738 * 300.54976 * 16 15 13 41 41 H 1.08998 * 109.50177 * 179.49716 * 17 16 15 42 42 H 1.09000 * 109.50404 * 59.37274 * 17 16 15 43 43 H 1.09002 * 109.62982 * 353.98553 * 20 11 9 44 44 H 1.09003 * 109.62504 * 114.36402 * 20 11 9 45 45 H 0.97006 * 119.99757 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6233 -1.1435 0.0068 7 8 4.3618 -2.2769 0.0128 8 6 2.2166 -1.2041 0.0005 9 6 1.5123 -2.5007 0.0017 10 8 1.2219 -3.0356 -1.0509 11 7 1.1910 -3.0920 1.1694 12 6 0.4891 -4.3829 1.1817 13 6 1.2975 -5.3704 2.0365 14 1 0.7404 -6.2956 2.1835 15 6 2.6383 -5.6383 1.3417 16 6 3.4075 -4.3226 1.2050 17 6 3.6754 -3.7325 2.5912 18 6 2.3387 -3.4575 3.2912 19 1 2.4956 -3.0717 4.2984 20 6 1.5378 -2.4544 2.4470 21 7 1.5772 -4.7209 3.3316 22 6 1.1502 -5.2640 4.5140 23 1 0.9560 -4.6251 5.3627 24 6 0.9672 -6.6358 4.6215 25 7 1.5325 -7.4454 3.7513 26 14 -0.0817 -7.3328 6.0012 27 1 -1.4930 -7.4303 5.5493 28 1 0.4154 -8.6835 6.3669 29 1 -0.0013 -6.4387 7.1841 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 4.0088 2.1048 0.0009 34 1 4.5803 -2.6087 -0.8688 35 1 -0.5045 -4.2553 1.6112 36 1 0.4048 -4.7635 0.1639 37 1 3.2222 -6.3411 1.9360 38 1 2.4582 -6.0589 0.3525 39 1 4.3559 -4.5079 0.7007 40 1 2.8176 -3.6171 0.6198 41 1 4.2310 -2.8004 2.4887 42 1 4.2567 -4.4404 3.1820 43 1 2.1427 -1.5669 2.2611 44 1 0.6266 -2.1723 2.9747 45 1 1.4048 -8.4041 3.8267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039861149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:25 Heat of formation + Delta-G solvation = 35.625565 kcal Electronic energy + Delta-G solvation = -31456.878824 eV Core-core repulsion = 27477.000071 eV Total energy + Delta-G solvation = -3979.878753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78409 -40.21752 -37.83976 -37.76481 -34.42663 -34.01164 -32.73711 -32.26157 -31.60150 -30.39880 -28.89843 -27.00821 -25.75578 -24.93899 -23.58737 -22.98291 -21.63352 -21.27374 -19.98340 -19.02623 -18.59159 -17.97293 -17.52829 -16.39268 -16.33663 -15.76615 -15.19201 -14.76547 -14.66504 -14.39670 -13.94714 -13.72026 -13.57513 -13.51110 -13.18506 -13.02269 -12.88952 -12.70673 -12.48634 -12.28250 -12.02717 -11.76907 -11.45645 -11.27232 -11.18947 -10.97864 -10.73029 -10.52687 -10.30953 -10.14582 -10.06208 -9.97849 -9.87433 -9.56497 -9.51728 -9.43712 -9.23588 -8.53382 -7.94864 -6.66772 -5.86311 -3.29465 0.44861 0.71620 2.55942 3.11851 3.18949 3.33188 3.41041 3.41672 3.49215 3.75957 4.06274 4.38469 4.46005 4.77944 4.93804 5.09339 5.12761 5.28434 5.31908 5.46753 5.59360 5.63717 5.67921 5.72335 5.91721 5.94920 5.99451 6.01767 6.12988 6.23541 6.41487 6.43876 6.49778 6.63765 6.71343 6.72919 6.91353 7.00084 7.10039 7.15722 7.20389 7.48464 7.57369 7.68679 7.75530 7.79069 8.27113 8.32745 9.09320 9.71409 10.33009 11.20423 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.004331 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.519094 B = 6463.240728 C = 6684.761357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.221 3.779 3 N -0.527 5.527 4 C 0.328 3.672 5 N -0.542 5.542 6 C 0.398 3.602 7 O -0.454 6.454 8 C -0.239 4.239 9 C 0.575 3.425 10 O -0.544 6.544 11 N -0.572 5.572 12 C 0.091 3.909 13 C 0.178 3.822 14 H 0.117 0.883 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.116 4.116 18 C 0.152 3.848 19 H 0.076 0.924 20 C 0.099 3.901 21 N -0.577 5.577 22 C -0.253 4.253 23 H 0.067 0.933 24 C 0.006 3.994 25 N -0.894 5.894 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.204 0.796 34 H 0.409 0.591 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 13.799 -7.784 15.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 N -0.244 5.244 4 C 0.041 3.959 5 N -0.267 5.267 6 C 0.210 3.790 7 O -0.263 6.263 8 C -0.248 4.248 9 C 0.361 3.639 10 O -0.423 6.423 11 N -0.302 5.302 12 C -0.032 4.032 13 C 0.071 3.929 14 H 0.134 0.866 15 C -0.157 4.157 16 C -0.161 4.161 17 C -0.155 4.155 18 C 0.043 3.957 19 H 0.094 0.906 20 C -0.026 4.026 21 N -0.298 5.298 22 C -0.382 4.382 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.538 5.538 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.220 0.780 34 H 0.270 0.730 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.466 14.108 -7.679 16.129 hybrid contribution -0.464 -1.283 0.392 1.419 sum 1.002 12.825 -7.288 14.785 Atomic orbital electron populations 1.20910 0.87099 1.04734 1.04385 1.21769 0.97700 0.86053 0.86911 1.68271 1.10215 1.29387 1.16507 1.24912 0.86287 0.96159 0.88582 1.68094 1.42602 0.98715 1.17270 1.19474 0.85746 0.86115 0.87659 1.84943 1.72461 1.34930 1.33933 1.21856 0.95260 0.97188 1.10521 1.17318 0.78935 0.83282 0.84331 1.90805 1.55714 1.64869 1.30892 1.48140 1.55278 1.21772 1.05035 1.22650 0.95727 0.82937 1.01898 1.21162 0.93588 0.94866 0.83275 0.86580 1.21864 0.98646 0.96834 0.98312 1.22045 0.98853 0.98303 0.96872 1.21869 0.97443 0.99076 0.97149 1.21207 0.90179 0.88147 0.96129 0.90560 1.22384 0.99796 0.95841 0.84582 1.44417 1.60736 1.22396 1.02263 1.19137 1.38480 0.89830 0.90740 0.91494 1.25003 0.99884 0.96240 0.98169 1.69992 1.43281 1.02640 1.37868 0.86304 0.80434 0.78269 0.81808 1.21454 1.21837 1.20534 0.88860 0.89138 0.89651 0.78003 0.73025 0.91780 0.89953 0.90998 0.94638 0.94858 0.90319 0.94094 0.92591 0.92128 0.91416 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.85 36.01 0.35 -0.84 16 2 C 0.22 2.81 6.86 -81.86 -0.56 2.25 16 3 N -0.53 -6.27 10.36 -10.52 -0.11 -6.38 16 4 C 0.33 3.55 12.27 -92.09 -1.13 2.42 16 5 N -0.54 -6.94 10.45 -14.32 -0.15 -7.09 16 6 C 0.40 5.49 7.69 -16.19 -0.12 5.37 16 7 O -0.45 -6.05 8.50 -17.52 -0.15 -6.20 16 8 C -0.24 -3.42 3.65 -104.56 -0.38 -3.81 16 9 C 0.58 9.50 3.15 -12.46 -0.04 9.46 16 10 O -0.54 -10.35 16.50 5.29 0.09 -10.26 16 11 N -0.57 -9.77 1.65 -173.45 -0.29 -10.05 16 12 C 0.09 1.72 5.89 -3.49 -0.02 1.70 16 13 C 0.18 3.91 2.67 -66.85 -0.18 3.73 16 14 H 0.12 2.90 5.88 -51.93 -0.31 2.60 16 15 C -0.12 -2.50 5.56 -26.53 -0.15 -2.65 16 16 C -0.12 -2.30 3.60 -26.72 -0.10 -2.40 16 17 C -0.12 -2.22 5.49 -26.53 -0.15 -2.37 16 18 C 0.15 2.95 3.62 -66.82 -0.24 2.71 16 19 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 20 C 0.10 1.64 5.80 -3.47 -0.02 1.62 16 21 N -0.58 -13.14 2.53 -155.41 -0.39 -13.54 16 22 C -0.25 -6.41 9.71 -15.06 -0.15 -6.56 16 23 H 0.07 1.68 7.90 -52.49 -0.41 1.27 16 24 C 0.01 0.16 4.97 -17.43 -0.09 0.08 16 25 N -0.89 -24.16 11.01 55.49 0.61 -23.55 16 26 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.98 7.18 -51.93 -0.37 0.61 16 33 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.41 3.86 9.06 45.56 0.41 4.28 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.56 6.98 -51.93 -0.36 1.20 16 37 H 0.07 1.75 7.99 -51.93 -0.42 1.34 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.03 0.59 7.53 -51.93 -0.39 0.20 16 40 H 0.08 1.40 1.43 -52.49 -0.07 1.32 16 41 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 0.94 6.20 -51.93 -0.32 0.62 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -30.25 343.60 -8.35 -38.61 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.15 Total: 6.91 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -2.97 Total: 10.72 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.33 Total: -60.61 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.06 Total: -16.46 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.25 -8.35 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039861149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.231 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds