Wall clock time and date at job start Tue Mar 31 2020 17:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32216 * 120.50975 * 2 1 4 4 C 1.31903 * 121.14279 * 179.97438 * 3 2 1 5 5 N 1.31759 * 122.19671 * 359.97438 * 4 3 2 6 6 C 1.32748 * 120.86828 * 359.76397 * 5 4 3 7 7 O 1.35276 * 120.61272 * 180.24548 * 6 5 4 8 8 C 1.39765 * 120.51004 * 179.97438 * 2 1 3 9 9 C 1.47544 * 120.97994 * 359.97438 * 8 2 1 10 10 O 1.21589 * 119.99580 * 90.00646 * 9 8 2 11 11 N 1.34780 * 120.00174 * 270.00786 * 9 8 2 12 12 C 1.46941 * 120.43786 * 179.97438 * 11 9 8 13 13 C 1.53596 * 108.54811 * 125.74970 * 12 11 9 14 14 H 1.09000 * 110.59694 * 172.12723 * 13 12 11 15 15 C 1.53369 * 108.68300 * 294.31772 * 13 12 11 16 16 C 1.53011 * 109.25396 * 60.26407 * 15 13 12 17 17 C 1.53018 * 109.79665 * 60.57909 * 16 15 13 18 18 C 1.53376 * 109.26927 * 299.43552 * 17 16 15 19 19 H 1.08994 * 111.08332 * 177.79981 * 18 17 16 20 20 C 1.46941 * 120.44143 * 359.97351 * 11 9 8 21 21 N 1.47564 * 107.98368 * 56.34443 * 18 17 16 22 22 C 1.36940 * 121.60684 * 122.30223 * 21 18 17 23 23 H 1.07995 * 120.00057 * 27.50034 * 22 21 18 24 24 C 1.38810 * 119.99618 * 207.50384 * 22 21 18 25 25 N 1.31617 * 120.00364 * 18.60969 * 24 22 21 26 26 Si 1.86804 * 119.99903 * 198.61643 * 24 22 21 27 27 H 1.48502 * 109.47288 * 89.99842 * 26 24 22 28 28 H 1.48498 * 109.47105 * 209.99933 * 26 24 22 29 29 H 1.48503 * 109.46840 * 329.99605 * 26 24 22 30 30 H 1.09001 * 109.46995 * 270.01416 * 1 2 3 31 31 H 1.09002 * 109.47176 * 30.01970 * 1 2 3 32 32 H 1.09002 * 109.47035 * 150.01515 * 1 2 3 33 33 H 1.08001 * 118.90545 * 180.02562 * 4 3 2 34 34 H 0.96703 * 114.00142 * 270.24242 * 7 6 5 35 35 H 1.09001 * 109.62516 * 245.46492 * 12 11 9 36 36 H 1.08995 * 109.62517 * 6.02752 * 12 11 9 37 37 H 1.09001 * 109.50680 * 180.19548 * 15 13 12 38 38 H 1.08997 * 109.51359 * 300.32948 * 15 13 12 39 39 H 1.09001 * 109.42223 * 180.67603 * 16 15 13 40 40 H 1.09004 * 109.41738 * 300.54976 * 16 15 13 41 41 H 1.08998 * 109.50177 * 179.49716 * 17 16 15 42 42 H 1.09000 * 109.50404 * 59.37274 * 17 16 15 43 43 H 1.09002 * 109.62982 * 353.98553 * 20 11 9 44 44 H 1.09003 * 109.62504 * 114.36402 * 20 11 9 45 45 H 0.97006 * 119.99757 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6233 -1.1435 0.0068 7 8 4.3618 -2.2769 0.0128 8 6 2.2166 -1.2041 0.0005 9 6 1.5123 -2.5007 0.0017 10 8 1.2219 -3.0356 -1.0509 11 7 1.1910 -3.0920 1.1694 12 6 0.4891 -4.3829 1.1817 13 6 1.2975 -5.3704 2.0365 14 1 0.7404 -6.2956 2.1835 15 6 2.6383 -5.6383 1.3417 16 6 3.4075 -4.3226 1.2050 17 6 3.6754 -3.7325 2.5912 18 6 2.3387 -3.4575 3.2912 19 1 2.4956 -3.0717 4.2984 20 6 1.5378 -2.4544 2.4470 21 7 1.5772 -4.7209 3.3316 22 6 1.1502 -5.2640 4.5140 23 1 0.9560 -4.6251 5.3627 24 6 0.9672 -6.6358 4.6215 25 7 1.5325 -7.4454 3.7513 26 14 -0.0817 -7.3328 6.0012 27 1 -1.4930 -7.4303 5.5493 28 1 0.4154 -8.6835 6.3669 29 1 -0.0013 -6.4387 7.1841 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 4.0088 2.1048 0.0009 34 1 4.5803 -2.6087 -0.8688 35 1 -0.5045 -4.2553 1.6112 36 1 0.4048 -4.7635 0.1639 37 1 3.2222 -6.3411 1.9360 38 1 2.4582 -6.0589 0.3525 39 1 4.3559 -4.5079 0.7007 40 1 2.8176 -3.6171 0.6198 41 1 4.2310 -2.8004 2.4887 42 1 4.2567 -4.4404 3.1820 43 1 2.1427 -1.5669 2.2611 44 1 0.6266 -2.1723 2.9747 45 1 1.4048 -8.4041 3.8267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039861149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:24 Heat of formation + Delta-G solvation = 15.221082 kcal Electronic energy + Delta-G solvation = -31457.763629 eV Core-core repulsion = 27477.000071 eV Total energy + Delta-G solvation = -3980.763558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.91129 -41.50867 -39.25643 -38.82413 -35.76360 -35.23873 -34.43093 -33.65932 -32.86364 -32.15370 -29.86212 -28.55196 -27.24426 -26.19836 -25.21163 -23.93089 -23.21347 -22.91233 -21.34324 -20.11931 -19.97660 -19.29396 -18.77592 -17.95273 -17.37398 -17.09417 -16.60936 -16.34691 -15.99743 -15.76440 -15.30912 -15.20506 -15.04197 -14.69312 -14.53321 -14.41245 -14.11661 -13.89501 -13.77956 -13.51704 -13.38041 -13.14650 -13.09742 -13.02596 -12.68129 -12.48956 -12.36245 -12.10368 -11.88637 -11.73986 -11.57477 -11.43135 -11.27842 -11.09289 -10.96114 -10.52411 -10.47710 -10.42043 -9.51072 -8.48675 -7.81658 -5.26754 -0.50538 -0.22845 1.27065 1.49398 1.51911 1.58666 1.87103 2.20108 2.52835 2.53630 2.92364 3.15028 3.24019 3.31324 3.47542 3.80810 4.06673 4.09418 4.13595 4.19625 4.24104 4.32393 4.37988 4.42593 4.55828 4.60396 4.63866 4.71263 4.83581 4.84417 4.86331 4.91440 5.12291 5.12637 5.19147 5.30909 5.39130 5.43502 5.54503 5.66445 5.69712 5.74179 5.87614 6.31490 6.34618 6.40872 6.88809 6.92596 7.16056 7.83780 8.42648 9.21936 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.004331 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.519094 B = 6463.240728 C = 6684.761357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.226 3.774 3 N -0.530 5.530 4 C 0.336 3.664 5 N -0.553 5.553 6 C 0.398 3.602 7 O -0.469 6.469 8 C -0.263 4.263 9 C 0.585 3.415 10 O -0.569 6.569 11 N -0.573 5.573 12 C 0.104 3.896 13 C 0.178 3.822 14 H 0.082 0.918 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.106 4.106 18 C 0.144 3.856 19 H 0.078 0.922 20 C 0.112 3.888 21 N -0.590 5.590 22 C -0.256 4.256 23 H 0.069 0.931 24 C -0.042 4.042 25 N -0.921 5.921 26 Si 0.960 3.040 27 H -0.287 1.287 28 H -0.302 1.302 29 H -0.272 1.272 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.244 0.756 34 H 0.423 0.577 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 16.924 -8.062 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 N -0.246 5.246 4 C 0.050 3.950 5 N -0.278 5.278 6 C 0.211 3.789 7 O -0.279 6.279 8 C -0.272 4.272 9 C 0.373 3.627 10 O -0.450 6.450 11 N -0.304 5.304 12 C -0.020 4.020 13 C 0.071 3.929 14 H 0.099 0.901 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.145 4.145 18 C 0.037 3.963 19 H 0.096 0.904 20 C -0.012 4.012 21 N -0.311 5.311 22 C -0.386 4.386 23 H 0.087 0.913 24 C -0.238 4.238 25 N -0.567 5.567 26 Si 0.789 3.211 27 H -0.214 1.214 28 H -0.229 1.229 29 H -0.197 1.197 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.259 0.741 34 H 0.287 0.713 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.367 17.276 -7.968 19.074 hybrid contribution -0.363 -2.172 0.439 2.246 sum 1.004 15.104 -7.529 16.906 Atomic orbital electron populations 1.20981 0.85819 1.05022 1.05249 1.22080 0.98627 0.85687 0.85580 1.68410 1.10681 1.28614 1.16919 1.25796 0.86131 0.97029 0.86020 1.68214 1.42744 0.98739 1.18112 1.19546 0.85554 0.86577 0.87268 1.84862 1.72426 1.35187 1.35456 1.21652 0.95473 0.96292 1.13747 1.17554 0.78042 0.83745 0.83363 1.90792 1.56566 1.65864 1.31735 1.48089 1.55378 1.21181 1.05715 1.22294 0.95445 0.83265 1.00983 1.20979 0.93735 0.94456 0.83753 0.90064 1.21758 0.98355 0.97450 0.97513 1.22014 0.99093 0.97023 0.97092 1.21749 0.97103 0.99046 0.96620 1.21404 0.90443 0.87412 0.97078 0.90422 1.22239 1.00090 0.95186 0.83719 1.44555 1.61498 1.23308 1.01781 1.19415 1.37618 0.89985 0.91583 0.91339 1.25630 1.01227 0.96687 1.00256 1.70153 1.44754 1.02236 1.39535 0.85384 0.78808 0.77037 0.79827 1.21417 1.22898 1.19663 0.87586 0.87265 0.90921 0.74057 0.71288 0.91368 0.90064 0.94897 0.94394 0.94019 0.88729 0.92171 0.95590 0.90141 0.90278 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.85 71.24 0.70 -1.35 16 2 C 0.23 5.05 6.86 42.87 0.29 5.34 16 3 N -0.53 -10.62 10.36 -187.21 -1.94 -12.56 16 4 C 0.34 5.94 12.27 180.86 2.22 8.16 16 5 N -0.55 -12.36 10.45 -312.05 -3.26 -15.62 16 6 C 0.40 9.95 7.69 85.18 0.65 10.60 16 7 O -0.47 -11.49 8.50 -85.61 -0.73 -12.22 16 8 C -0.26 -6.86 3.65 -19.83 -0.07 -6.93 16 9 C 0.58 18.32 3.15 86.70 0.27 18.59 16 10 O -0.57 -21.00 16.50 -4.00 -0.07 -21.06 16 11 N -0.57 -18.75 1.65 -820.93 -1.35 -20.10 16 12 C 0.10 3.90 5.89 86.50 0.51 4.41 16 13 C 0.18 7.99 2.67 45.11 0.12 8.11 16 14 H 0.08 4.25 5.88 -2.39 -0.01 4.24 16 15 C -0.11 -4.89 5.56 30.72 0.17 -4.72 16 16 C -0.11 -4.24 3.60 30.60 0.11 -4.13 16 17 C -0.11 -3.99 5.49 30.73 0.17 -3.82 16 18 C 0.14 5.48 3.62 45.13 0.16 5.64 16 19 H 0.08 2.92 8.01 -2.39 -0.02 2.90 16 20 C 0.11 3.47 5.80 86.51 0.50 3.97 16 21 N -0.59 -27.10 2.53 -645.61 -1.64 -28.73 16 22 C -0.26 -13.12 9.71 84.03 0.82 -12.30 16 23 H 0.07 3.43 7.90 -2.91 -0.02 3.41 16 24 C -0.04 -2.20 4.97 84.86 0.42 -1.78 16 25 N -0.92 -51.77 11.01 21.65 0.24 -51.53 16 26 Si 0.96 43.29 29.59 68.60 2.03 45.32 16 27 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.53 7.18 -2.39 -0.02 1.51 16 33 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.42 7.24 9.06 -74.06 -0.67 6.57 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 3.08 6.98 -2.39 -0.02 3.06 16 37 H 0.03 1.67 7.99 -2.39 -0.02 1.65 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 1.46 7.53 -2.39 -0.02 1.45 16 40 H 0.10 3.25 1.43 -3.49 0.00 3.24 16 41 H 0.06 2.04 7.52 -2.39 -0.02 2.02 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 2.23 6.20 -2.39 -0.01 2.22 16 44 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -66.01 343.60 0.71 -65.30 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.37 Total: 21.40 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 7.05 Total: 29.80 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -7.95 Total: -128.54 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.79 Total: -33.28 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.01 0.71 -65.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039861149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.518 kcal (2) G-P(sol) polarization free energy of solvation -66.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds