Wall clock time and date at job start Tue Mar 31 2020 16:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.45727 * 2 1 4 4 C 1.34770 * 119.99990 * 60.00135 * 3 2 1 5 5 O 1.21555 * 120.00235 * 359.97438 * 4 3 2 6 6 C 1.47850 * 120.00066 * 180.02562 * 4 3 2 7 7 C 1.39679 * 120.48998 * 359.97438 * 6 4 3 8 8 N 1.31733 * 120.87866 * 180.02562 * 7 6 4 9 9 C 1.31764 * 122.04584 * 359.69425 * 8 7 6 10 10 C 1.39637 * 120.87649 * 0.59548 * 9 8 7 11 11 C 1.47851 * 120.48824 * 179.69872 * 10 9 8 12 12 N 1.34778 * 120.00201 * 359.45010 * 11 10 9 13 13 O 1.21550 * 119.99840 * 179.72162 * 11 10 9 14 14 C 1.39732 * 120.49406 * 179.97438 * 6 4 3 15 15 C 1.53038 * 109.46212 * 119.97104 * 2 1 3 16 16 C 1.53159 * 109.32786 * 181.38787 * 15 2 1 17 17 N 1.46923 * 108.77092 * 305.35587 * 16 15 2 18 18 C 1.36937 * 120.62836 * 233.63619 * 17 16 15 19 19 H 1.08010 * 119.99834 * 152.60292 * 18 17 16 20 20 C 1.38804 * 120.00278 * 332.59581 * 18 17 16 21 21 N 1.31620 * 120.00280 * 159.36654 * 20 18 17 22 22 Si 1.86801 * 120.00120 * 339.36360 * 20 18 17 23 23 H 1.48499 * 109.46878 * 92.89810 * 22 20 18 24 24 H 1.48495 * 109.47374 * 212.90417 * 22 20 18 25 25 H 1.48505 * 109.47033 * 332.90549 * 22 20 18 26 26 C 1.46926 * 118.73778 * 53.60840 * 17 16 15 27 27 C 1.53040 * 109.46211 * 240.02663 * 2 1 3 28 28 H 1.08997 * 109.47249 * 60.00506 * 1 2 3 29 29 H 1.08998 * 109.47057 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47261 * 299.99833 * 1 2 3 31 31 H 0.97003 * 119.99816 * 239.99784 * 3 2 1 32 32 H 1.08002 * 119.56149 * 0.04204 * 7 6 4 33 33 H 1.07996 * 119.56584 * 180.32060 * 9 8 7 34 34 H 0.97005 * 119.99515 * 359.97438 * 12 11 10 35 35 H 0.96993 * 119.99957 * 180.02562 * 12 11 10 36 36 H 1.07997 * 120.91621 * 359.97438 * 14 6 4 37 37 H 1.09003 * 109.49394 * 301.32593 * 15 2 1 38 38 H 1.09004 * 109.49740 * 61.42397 * 15 2 1 39 39 H 1.09002 * 109.58619 * 185.56974 * 16 15 2 40 40 H 1.09003 * 109.70821 * 65.21317 * 16 15 2 41 41 H 0.96996 * 120.00453 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.58689 * 186.60732 * 26 17 16 43 43 H 1.08992 * 109.70414 * 66.25034 * 26 17 16 44 44 H 1.08998 * 109.49824 * 298.57766 * 27 2 1 45 45 H 1.09005 * 109.49880 * 58.64418 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6923 2.2111 1.0108 5 8 0.9932 1.8136 1.9222 6 6 2.1843 3.6053 1.0105 7 6 2.9878 4.0731 -0.0319 8 7 3.4308 5.3137 -0.0396 9 6 3.1370 6.1670 0.9205 10 6 2.3447 5.7818 2.0039 11 6 2.0259 6.7444 3.0799 12 7 2.5101 8.0010 3.0252 13 8 1.3312 6.4010 4.0163 14 6 1.8524 4.4746 2.0530 15 6 2.0399 -0.7208 1.2500 16 6 3.5711 -0.6888 1.2645 17 7 4.0677 -1.2492 0.0004 18 6 4.9754 -2.2745 0.0006 19 1 5.0113 -2.9641 -0.8299 20 6 5.8493 -2.4276 1.0681 21 7 6.4253 -3.5909 1.2855 22 14 6.2081 -0.9825 2.1961 23 1 5.2787 -1.0156 3.3538 24 1 7.6084 -1.0700 2.6826 25 1 6.0223 0.2871 1.4484 26 6 3.5714 -0.6889 -1.2640 27 6 2.0399 -0.7209 -1.2500 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5757 1.6987 -0.7275 32 1 3.2491 3.4090 -0.8425 33 1 3.5177 7.1764 0.8712 34 1 3.0681 8.2737 2.2800 35 1 2.3012 8.6323 3.7313 36 1 1.2328 4.1453 2.8740 37 1 1.6574 -0.2207 2.1398 38 1 1.6977 -1.7557 1.2382 39 1 3.9412 -1.2847 2.0988 40 1 3.9163 0.3399 1.3688 41 1 7.0363 -3.6978 2.0312 42 1 3.9417 -1.2850 -2.0981 43 1 3.9145 0.3402 -1.3696 44 1 1.6977 -1.7557 -1.2382 45 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045642868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:18 Heat of formation + Delta-G solvation = -5.476452 kcal Electronic energy + Delta-G solvation = -29225.715721 eV Core-core repulsion = 25244.054650 eV Total energy + Delta-G solvation = -3981.661070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25864 -40.19176 -39.10035 -37.61351 -34.71989 -34.38871 -33.01169 -32.66805 -31.63472 -30.61386 -30.49598 -27.76065 -25.45736 -24.72962 -23.90395 -22.87197 -22.25999 -21.33169 -20.49491 -19.06690 -18.91958 -17.64153 -17.40584 -17.12264 -16.86877 -15.86657 -15.50740 -15.29930 -15.11083 -14.91199 -14.68446 -14.12468 -13.97398 -13.93388 -13.72139 -13.55728 -13.44436 -13.29623 -12.92119 -12.39732 -12.12721 -12.02701 -11.79756 -11.42504 -11.32882 -10.97253 -10.86160 -10.59841 -10.35688 -10.33613 -10.21573 -10.15217 -9.93193 -9.79044 -9.68731 -9.54062 -9.36808 -8.95199 -8.59270 -6.99703 -5.96814 -3.32765 0.00799 0.54378 2.27076 2.84828 2.86415 3.14458 3.33652 3.47565 3.49160 3.53668 3.70142 4.19310 4.26401 4.42750 4.51873 4.57479 4.72183 4.84361 4.93770 5.07253 5.19123 5.25953 5.42381 5.50249 5.60891 5.72404 5.81982 5.92117 5.94255 5.98000 6.04723 6.11188 6.26513 6.26988 6.46002 6.48490 6.50087 6.60257 6.66137 6.76755 6.77063 6.92979 7.27220 7.54646 7.73599 7.94220 8.19264 8.30697 8.91895 9.70476 10.07757 11.19107 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.003681 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.354292 B = 7604.070365 C = 8451.625290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 N -0.706 5.706 4 C 0.563 3.437 5 O -0.524 6.524 6 C -0.185 4.185 7 C 0.160 3.840 8 N -0.485 5.485 9 C 0.153 3.847 10 C -0.202 4.202 11 C 0.571 3.429 12 N -0.849 5.849 13 O -0.530 6.530 14 C 0.042 3.958 15 C -0.145 4.145 16 C 0.131 3.869 17 N -0.604 5.604 18 C -0.261 4.261 19 H 0.086 0.914 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.882 3.118 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.273 1.273 26 C 0.149 3.851 27 C -0.139 4.139 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.397 0.603 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.401 0.599 35 H 0.408 0.592 36 H 0.162 0.838 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.021 0.979 41 H 0.263 0.737 42 H 0.067 0.933 43 H 0.017 0.983 44 H 0.082 0.918 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 21.781 -4.307 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.357 5.357 4 C 0.348 3.652 5 O -0.401 6.401 6 C -0.191 4.191 7 C 0.003 3.997 8 N -0.193 5.193 9 C -0.006 4.006 10 C -0.208 4.208 11 C 0.356 3.644 12 N -0.414 5.414 13 O -0.406 6.406 14 C 0.015 3.985 15 C -0.184 4.184 16 C 0.006 3.994 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.104 0.896 20 C -0.173 4.173 21 N -0.550 5.550 22 Si 0.713 3.287 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.198 1.198 26 C 0.022 3.978 27 C -0.178 4.178 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.231 0.769 35 H 0.240 0.760 36 H 0.180 0.820 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.100 0.900 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.706 21.218 -3.751 23.633 hybrid contribution 0.418 1.083 0.946 1.497 sum -9.289 22.301 -2.805 24.320 Atomic orbital electron populations 1.22219 0.94649 1.02395 1.02608 1.20349 0.93212 0.79350 0.97184 1.46082 1.52790 1.12431 1.24412 1.17810 0.80584 0.84169 0.82613 1.90747 1.37639 1.76332 1.35403 1.21168 1.03441 0.96438 0.98017 1.23286 0.88930 0.91997 0.95507 1.67724 1.21770 1.03329 1.26460 1.23143 0.90691 0.99044 0.87695 1.20888 1.05196 0.96091 0.98599 1.17947 0.79203 0.82075 0.85168 1.43698 1.55258 1.13100 1.29321 1.90872 1.37635 1.77769 1.34306 1.21886 0.90936 0.89904 0.95767 1.22419 0.98421 1.00390 0.97214 1.21244 0.91668 0.96518 0.89983 1.44352 1.48887 1.40281 0.99287 1.18904 1.09765 1.02716 1.07512 0.89649 1.25252 0.97398 0.96552 0.98141 1.69830 1.32585 1.21947 1.30654 0.86974 0.76222 0.84766 0.80785 1.21659 1.23187 1.19818 1.20886 0.90644 0.96271 0.89985 1.22353 0.99271 1.01125 0.95086 0.93114 0.91757 0.90661 0.76706 0.81620 0.81958 0.76936 0.75999 0.82030 0.90537 0.90855 0.91141 0.96129 0.92748 0.91475 0.96550 0.89955 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.40 37.16 0.31 -1.84 16 2 C 0.18 2.74 0.66 -131.78 -0.09 2.66 16 3 N -0.71 -9.54 4.06 -48.50 -0.20 -9.74 16 4 C 0.56 8.21 7.20 -12.33 -0.09 8.12 16 5 O -0.52 -9.13 12.63 5.32 0.07 -9.06 16 6 C -0.19 -2.28 5.89 -104.87 -0.62 -2.90 16 7 C 0.16 1.68 10.71 -17.06 -0.18 1.50 16 8 N -0.49 -4.88 10.33 -12.57 -0.13 -5.01 16 9 C 0.15 1.23 10.71 -17.06 -0.18 1.05 16 10 C -0.20 -2.01 5.89 -104.87 -0.62 -2.63 16 11 C 0.57 5.65 8.05 -12.33 -0.10 5.55 16 12 N -0.85 -4.21 8.83 30.53 0.27 -3.95 16 13 O -0.53 -7.55 17.25 5.32 0.09 -7.46 16 14 C 0.04 0.51 9.25 -38.45 -0.36 0.16 16 15 C -0.14 -2.68 4.66 -26.63 -0.12 -2.81 16 16 C 0.13 2.89 3.95 -3.73 -0.01 2.88 16 17 N -0.60 -13.76 2.77 -172.34 -0.48 -14.24 16 18 C -0.26 -7.13 10.03 -15.06 -0.15 -7.28 16 19 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 20 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 21 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 22 Si 0.88 22.81 24.34 -169.99 -4.14 18.67 16 23 H -0.29 -7.41 6.62 56.52 0.37 -7.04 16 24 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 25 H -0.27 -6.89 6.64 56.52 0.38 -6.52 16 26 C 0.15 2.61 6.24 -3.71 -0.02 2.59 16 27 C -0.14 -1.99 4.96 -26.61 -0.13 -2.12 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.13 6.16 -51.93 -0.32 0.81 16 31 H 0.40 4.47 5.32 -40.82 -0.22 4.25 16 32 H 0.17 1.38 6.41 -52.49 -0.34 1.05 16 33 H 0.16 0.60 6.41 -52.49 -0.34 0.27 16 34 H 0.40 0.73 6.89 -40.82 -0.28 0.45 16 35 H 0.41 1.54 8.93 -40.82 -0.36 1.17 16 36 H 0.16 2.19 7.40 -52.49 -0.39 1.80 16 37 H 0.08 1.47 6.20 -51.93 -0.32 1.15 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.76 4.50 -51.93 -0.23 1.52 16 40 H 0.02 0.46 6.67 -51.93 -0.35 0.12 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.02 0.27 6.94 -51.93 -0.36 -0.09 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -36.24 353.18 -6.51 -42.75 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.64 Total: 4.17 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.45 Total: 5.57 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.24 Total: -59.95 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.16 Total: -16.53 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.24 -6.51 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045642868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.276 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds