Wall clock time and date at job start Tue Mar 31 2020 16:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46136 * 2 1 4 4 C 1.34776 * 119.99925 * 60.02615 * 3 2 1 5 5 O 1.21491 * 119.99829 * 0.02562 * 4 3 2 6 6 C 1.48331 * 119.99898 * 180.02562 * 4 3 2 7 7 C 1.39308 * 119.56959 * 180.02562 * 6 4 3 8 8 C 1.38447 * 119.18748 * 179.97438 * 7 6 4 9 9 C 1.39871 * 118.36335 * 0.28037 * 8 7 6 10 10 C 1.47997 * 120.46774 * 179.70078 * 9 8 7 11 11 N 1.34781 * 120.00242 * 179.97438 * 10 9 8 12 12 O 1.21532 * 120.00088 * 0.02562 * 10 9 8 13 13 C 1.39728 * 119.06863 * 359.47546 * 9 8 7 14 14 N 1.31418 * 120.72072 * 0.53080 * 13 9 8 15 15 C 1.53039 * 109.45086 * 119.96564 * 2 1 3 16 16 C 1.53192 * 109.31314 * 181.37765 * 15 2 1 17 17 N 1.46922 * 108.77756 * 305.36566 * 16 15 2 18 18 C 1.36934 * 120.63155 * 233.63419 * 17 16 15 19 19 H 1.07998 * 120.00215 * 27.66577 * 18 17 16 20 20 C 1.38814 * 119.99728 * 207.66253 * 18 17 16 21 21 N 1.31614 * 120.00217 * 17.36375 * 20 18 17 22 22 Si 1.86799 * 119.99874 * 197.35938 * 20 18 17 23 23 H 1.48505 * 109.47243 * 90.00312 * 22 20 18 24 24 H 1.48502 * 109.47510 * 210.00270 * 22 20 18 25 25 H 1.48505 * 109.47255 * 329.99984 * 22 20 18 26 26 C 1.46931 * 118.73944 * 53.60538 * 17 16 15 27 27 C 1.53036 * 109.45936 * 240.03013 * 2 1 3 28 28 H 1.09003 * 109.47181 * 59.99387 * 1 2 3 29 29 H 1.08997 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47071 * 300.00434 * 1 2 3 31 31 H 0.96996 * 119.99485 * 240.02971 * 3 2 1 32 32 H 1.08001 * 120.40590 * 359.97438 * 7 6 4 33 33 H 1.08007 * 120.82045 * 180.02562 * 8 7 6 34 34 H 0.96998 * 119.99894 * 0.02562 * 11 10 9 35 35 H 0.96996 * 120.00105 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.64117 * 180.23208 * 13 9 8 37 37 H 1.09001 * 109.49503 * 301.33187 * 15 2 1 38 38 H 1.09001 * 109.49517 * 61.42656 * 15 2 1 39 39 H 1.09004 * 109.58580 * 185.57883 * 16 15 2 40 40 H 1.08996 * 109.58856 * 65.15427 * 16 15 2 41 41 H 0.97006 * 119.99990 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.58958 * 186.60395 * 26 17 16 43 43 H 1.09004 * 109.69537 * 66.25007 * 26 17 16 44 44 H 1.08998 * 109.49661 * 298.57627 * 27 2 1 45 45 H 1.08997 * 109.49970 * 58.64328 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3814 0.0000 4 6 1.6928 2.2110 1.0111 5 8 0.9952 1.8132 1.9227 6 6 2.1865 3.6098 1.0108 7 6 1.8453 4.4595 2.0607 8 6 2.3109 5.7633 2.0527 9 6 3.1060 6.1783 0.9794 10 6 3.6231 7.5637 0.9203 11 7 4.3889 7.9535 -0.1180 12 8 3.3581 8.3497 1.8086 13 6 3.4091 5.2652 -0.0339 14 7 2.9477 4.0355 0.0104 15 6 2.0396 -0.7208 1.2501 16 6 3.5711 -0.6889 1.2644 17 7 4.0676 -1.2493 0.0003 18 6 4.9753 -2.2746 0.0004 19 1 5.0078 -2.9669 0.8287 20 6 5.8535 -2.4242 -1.0641 21 7 6.0601 -1.4226 -1.8926 22 14 6.7421 -4.0471 -1.3209 23 1 5.9244 -4.9264 -2.1947 24 1 8.0570 -3.7954 -1.9635 25 1 6.9514 -4.7099 -0.0085 26 6 3.5713 -0.6890 -1.2641 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.5753 1.6988 -0.7277 32 1 1.2251 4.1055 2.8709 33 1 2.0628 6.4444 2.8533 34 1 4.6008 7.3261 -0.8268 35 1 4.7276 8.8616 -0.1569 36 1 4.0254 5.5747 -0.8650 37 1 1.6569 -0.2206 2.1398 38 1 1.6973 -1.7556 1.2384 39 1 3.9412 -1.2849 2.0987 40 1 3.9142 0.3405 1.3675 41 1 6.6741 -1.5270 -2.6363 42 1 3.9416 -1.2850 -2.0981 43 1 3.9145 0.3402 -1.3696 44 1 1.6976 -1.7556 -1.2382 45 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045650090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:08 Heat of formation + Delta-G solvation = -12.179084 kcal Electronic energy + Delta-G solvation = -28877.841955 eV Core-core repulsion = 24895.890237 eV Total energy + Delta-G solvation = -3981.951718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.10618 -40.03471 -38.97417 -37.29343 -34.47521 -34.30962 -33.11686 -32.03628 -31.47217 -30.61197 -29.89774 -27.42998 -25.80680 -24.08125 -23.93013 -22.38208 -22.08122 -21.08606 -20.47292 -18.71955 -18.68557 -18.02912 -17.44467 -16.73592 -16.26595 -15.44068 -15.40942 -14.98472 -14.93114 -14.83204 -14.67841 -14.01330 -13.87236 -13.63131 -13.46764 -13.40668 -13.13347 -13.06290 -12.86883 -12.39709 -11.84337 -11.65099 -11.32319 -11.22353 -10.94107 -10.76516 -10.73989 -10.36015 -10.32969 -10.29373 -10.16800 -10.12873 -9.87983 -9.76823 -9.63283 -9.53515 -9.22008 -8.66356 -8.45969 -6.66495 -5.79462 -3.20646 -0.00014 0.88449 2.22611 2.95602 2.99120 3.22364 3.37396 3.44581 3.45685 3.71428 3.85364 4.34802 4.40342 4.49679 4.59795 4.67505 4.91582 5.26623 5.31656 5.35598 5.42022 5.50579 5.60605 5.61195 5.68466 5.97944 6.04338 6.12479 6.18238 6.28902 6.31436 6.33209 6.39497 6.53648 6.64290 6.69239 6.81633 6.82973 6.94510 7.04358 7.29738 7.35606 7.60168 7.76764 7.79130 7.87252 8.38910 8.44662 9.21307 9.84829 10.41882 11.28966 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.003163 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.415720 B = 8851.000034 C =10146.879282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 N -0.683 5.683 4 C 0.566 3.434 5 O -0.532 6.532 6 C 0.114 3.886 7 C -0.122 4.122 8 C -0.020 4.020 9 C -0.182 4.182 10 C 0.571 3.429 11 N -0.847 5.847 12 O -0.536 6.536 13 C 0.137 3.863 14 N -0.456 5.456 15 C -0.143 4.143 16 C 0.150 3.850 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.171 3.829 27 C -0.146 4.146 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.411 0.589 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.403 0.597 35 H 0.408 0.592 36 H 0.165 0.835 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.014 0.986 41 H 0.253 0.747 42 H 0.090 0.910 43 H 0.018 0.982 44 H 0.073 0.927 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 15.170 0.824 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 N -0.333 5.333 4 C 0.350 3.650 5 O -0.409 6.409 6 C -0.024 4.024 7 C -0.143 4.143 8 C -0.047 4.047 9 C -0.187 4.187 10 C 0.356 3.644 11 N -0.412 5.412 12 O -0.414 6.414 13 C -0.025 4.025 14 N -0.166 5.166 15 C -0.183 4.183 16 C 0.024 3.976 17 N -0.313 5.313 18 C -0.379 4.379 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.045 3.955 27 C -0.185 4.185 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.249 0.751 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.233 0.767 35 H 0.239 0.761 36 H 0.182 0.818 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.036 0.964 44 H 0.091 0.909 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.316 14.588 1.311 16.843 hybrid contribution 0.992 0.051 -0.404 1.073 sum -7.324 14.639 0.907 16.394 Atomic orbital electron populations 1.22232 0.95204 1.02090 1.02379 1.20386 0.92751 0.79727 0.97552 1.46057 1.51262 1.11707 1.24268 1.17789 0.80690 0.83664 0.82889 1.90710 1.38404 1.75767 1.36012 1.21673 0.94078 0.95529 0.91118 1.22176 0.99702 0.92908 0.99467 1.21757 0.91314 0.95321 0.96279 1.21081 1.03500 0.95370 0.98773 1.18048 0.77816 0.86816 0.81694 1.43733 1.54384 1.17692 1.25362 1.90830 1.58357 1.54251 1.37917 1.22945 0.95197 0.87927 0.96402 1.67637 1.08350 1.16264 1.24395 1.22409 0.99060 0.99761 0.97074 1.20832 0.90825 0.96082 0.89898 1.44040 1.48279 1.39601 0.99415 1.19213 1.09757 1.02867 1.06100 0.91708 1.25011 0.97230 0.97419 1.00016 1.70027 1.37851 1.28916 1.17989 0.86299 0.78769 0.83789 0.77965 1.21491 1.21839 1.20499 1.20751 0.86753 0.97250 0.90729 1.22527 1.01558 0.99995 0.94456 0.93244 0.92006 0.90897 0.75125 0.82470 0.82815 0.76661 0.76062 0.81831 0.90861 0.91607 0.93068 0.96823 0.93723 0.89224 0.96404 0.90879 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 8.40 37.16 0.31 -2.06 16 2 C 0.18 3.03 0.66 -131.78 -0.09 2.94 16 3 N -0.68 -11.02 4.09 -48.35 -0.20 -11.21 16 4 C 0.57 8.95 7.24 -12.11 -0.09 8.87 16 5 O -0.53 -9.19 12.53 5.37 0.07 -9.12 16 6 C 0.11 1.55 6.75 -82.93 -0.56 0.99 16 7 C -0.12 -1.39 9.62 -39.11 -0.38 -1.77 16 8 C -0.02 -0.21 9.71 -38.89 -0.38 -0.58 16 9 C -0.18 -1.78 5.90 -104.73 -0.62 -2.39 16 10 C 0.57 5.46 8.06 -12.26 -0.10 5.36 16 11 N -0.85 -4.59 8.83 30.56 0.27 -4.32 16 12 O -0.54 -7.06 17.25 5.34 0.09 -6.97 16 13 C 0.14 1.31 10.71 -17.17 -0.18 1.13 16 14 N -0.46 -5.79 9.52 -9.48 -0.09 -5.88 16 15 C -0.14 -2.64 4.67 -26.61 -0.12 -2.77 16 16 C 0.15 3.24 6.26 -3.71 -0.02 3.22 16 17 N -0.59 -14.47 2.99 -172.32 -0.52 -14.99 16 18 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 19 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -25.48 11.19 55.49 0.62 -24.86 16 22 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.17 3.85 5.04 -3.71 -0.02 3.83 16 27 C -0.15 -2.61 4.96 -26.61 -0.13 -2.74 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.14 6.17 -51.93 -0.32 0.82 16 31 H 0.41 6.66 6.59 -40.82 -0.27 6.39 16 32 H 0.16 1.66 7.63 -52.49 -0.40 1.25 16 33 H 0.15 1.36 7.73 -52.48 -0.41 0.96 16 34 H 0.40 1.19 6.89 -40.82 -0.28 0.90 16 35 H 0.41 1.67 8.93 -40.82 -0.36 1.31 16 36 H 0.16 0.95 6.41 -52.49 -0.34 0.61 16 37 H 0.07 1.35 6.20 -51.93 -0.32 1.03 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 40 H 0.01 0.31 7.74 -51.93 -0.40 -0.09 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 43 H 0.02 0.42 6.94 -51.93 -0.36 0.06 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -33.17 361.84 -7.78 -40.95 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.85 Total: 7.47 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.60 Total: 7.06 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.09 Total: -61.26 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.16 Total: -16.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.17 -7.78 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045650090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.774 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds