Wall clock time and date at job start Tue Mar 31 2020 16:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46136 * 2 1 4 4 C 1.34776 * 119.99925 * 60.02615 * 3 2 1 5 5 O 1.21491 * 119.99829 * 0.02562 * 4 3 2 6 6 C 1.48331 * 119.99898 * 180.02562 * 4 3 2 7 7 C 1.39308 * 119.56959 * 180.02562 * 6 4 3 8 8 C 1.38447 * 119.18748 * 179.97438 * 7 6 4 9 9 C 1.39871 * 118.36335 * 0.28037 * 8 7 6 10 10 C 1.47997 * 120.46774 * 179.70078 * 9 8 7 11 11 N 1.34781 * 120.00242 * 179.97438 * 10 9 8 12 12 O 1.21532 * 120.00088 * 0.02562 * 10 9 8 13 13 C 1.39728 * 119.06863 * 359.47546 * 9 8 7 14 14 N 1.31418 * 120.72072 * 0.53080 * 13 9 8 15 15 C 1.53039 * 109.45086 * 119.96564 * 2 1 3 16 16 C 1.53192 * 109.31314 * 181.37765 * 15 2 1 17 17 N 1.46922 * 108.77756 * 305.36566 * 16 15 2 18 18 C 1.36934 * 120.63155 * 233.63419 * 17 16 15 19 19 H 1.07998 * 120.00215 * 27.66577 * 18 17 16 20 20 C 1.38814 * 119.99728 * 207.66253 * 18 17 16 21 21 N 1.31614 * 120.00217 * 17.36375 * 20 18 17 22 22 Si 1.86799 * 119.99874 * 197.35938 * 20 18 17 23 23 H 1.48505 * 109.47243 * 90.00312 * 22 20 18 24 24 H 1.48502 * 109.47510 * 210.00270 * 22 20 18 25 25 H 1.48505 * 109.47255 * 329.99984 * 22 20 18 26 26 C 1.46931 * 118.73944 * 53.60538 * 17 16 15 27 27 C 1.53036 * 109.45936 * 240.03013 * 2 1 3 28 28 H 1.09003 * 109.47181 * 59.99387 * 1 2 3 29 29 H 1.08997 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47071 * 300.00434 * 1 2 3 31 31 H 0.96996 * 119.99485 * 240.02971 * 3 2 1 32 32 H 1.08001 * 120.40590 * 359.97438 * 7 6 4 33 33 H 1.08007 * 120.82045 * 180.02562 * 8 7 6 34 34 H 0.96998 * 119.99894 * 0.02562 * 11 10 9 35 35 H 0.96996 * 120.00105 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.64117 * 180.23208 * 13 9 8 37 37 H 1.09001 * 109.49503 * 301.33187 * 15 2 1 38 38 H 1.09001 * 109.49517 * 61.42656 * 15 2 1 39 39 H 1.09004 * 109.58580 * 185.57883 * 16 15 2 40 40 H 1.08996 * 109.58856 * 65.15427 * 16 15 2 41 41 H 0.97006 * 119.99990 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.58958 * 186.60395 * 26 17 16 43 43 H 1.09004 * 109.69537 * 66.25007 * 26 17 16 44 44 H 1.08998 * 109.49661 * 298.57627 * 27 2 1 45 45 H 1.08997 * 109.49970 * 58.64328 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3814 0.0000 4 6 1.6928 2.2110 1.0111 5 8 0.9952 1.8132 1.9227 6 6 2.1865 3.6098 1.0108 7 6 1.8453 4.4595 2.0607 8 6 2.3109 5.7633 2.0527 9 6 3.1060 6.1783 0.9794 10 6 3.6231 7.5637 0.9203 11 7 4.3889 7.9535 -0.1180 12 8 3.3581 8.3497 1.8086 13 6 3.4091 5.2652 -0.0339 14 7 2.9477 4.0355 0.0104 15 6 2.0396 -0.7208 1.2501 16 6 3.5711 -0.6889 1.2644 17 7 4.0676 -1.2493 0.0003 18 6 4.9753 -2.2746 0.0004 19 1 5.0078 -2.9669 0.8287 20 6 5.8535 -2.4242 -1.0641 21 7 6.0601 -1.4226 -1.8926 22 14 6.7421 -4.0471 -1.3209 23 1 5.9244 -4.9264 -2.1947 24 1 8.0570 -3.7954 -1.9635 25 1 6.9514 -4.7099 -0.0085 26 6 3.5713 -0.6890 -1.2641 27 6 2.0398 -0.7208 -1.2500 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.5753 1.6988 -0.7277 32 1 1.2251 4.1055 2.8709 33 1 2.0628 6.4444 2.8533 34 1 4.6008 7.3261 -0.8268 35 1 4.7276 8.8616 -0.1569 36 1 4.0254 5.5747 -0.8650 37 1 1.6569 -0.2206 2.1398 38 1 1.6973 -1.7556 1.2384 39 1 3.9412 -1.2849 2.0987 40 1 3.9142 0.3405 1.3675 41 1 6.6741 -1.5270 -2.6363 42 1 3.9416 -1.2850 -2.0981 43 1 3.9145 0.3402 -1.3696 44 1 1.6976 -1.7556 -1.2382 45 1 1.6569 -0.2211 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045650090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:07 Heat of formation + Delta-G solvation = -36.790237 kcal Electronic energy + Delta-G solvation = -28878.909175 eV Core-core repulsion = 24895.890237 eV Total energy + Delta-G solvation = -3983.018938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.07357 -41.16468 -39.91634 -38.72285 -36.14206 -35.01494 -34.15336 -33.44448 -32.73277 -31.91866 -31.53333 -29.07190 -26.75312 -25.89184 -24.76634 -23.97150 -23.26328 -22.38527 -21.67469 -20.16715 -19.56234 -18.99506 -18.69328 -18.12909 -17.10612 -16.84465 -16.48760 -16.25404 -16.11997 -15.91523 -15.87960 -15.57442 -15.23507 -14.93313 -14.87696 -14.69070 -14.35893 -14.28531 -14.01406 -13.77050 -13.31875 -13.08603 -13.02420 -12.85502 -12.61106 -12.52642 -12.15533 -11.98695 -11.76361 -11.60481 -11.49154 -11.30780 -11.16044 -10.95467 -10.80092 -10.53994 -10.48892 -10.41460 -9.95514 -8.64927 -7.85509 -5.29719 -0.89481 0.06375 1.30870 1.48218 1.49728 1.57957 1.98240 2.07368 2.35374 2.52723 2.77080 2.96138 3.28710 3.56928 3.58976 3.71368 3.74963 3.86788 3.91349 3.99429 4.05335 4.13996 4.48887 4.54825 4.64266 4.74279 4.77426 4.82317 4.84772 4.90202 4.93485 4.98657 5.14765 5.21056 5.28964 5.30565 5.37304 5.49571 5.64852 5.66194 5.78395 5.79363 6.28123 6.39407 6.41900 6.67906 7.15383 7.16955 7.17907 7.87657 8.39966 9.20212 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.003163 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.415720 B = 8851.000034 C =10146.879282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.183 3.817 3 N -0.685 5.685 4 C 0.565 3.435 5 O -0.551 6.551 6 C 0.091 3.909 7 C -0.119 4.119 8 C -0.020 4.020 9 C -0.176 4.176 10 C 0.572 3.428 11 N -0.824 5.824 12 O -0.576 6.576 13 C 0.140 3.860 14 N -0.475 5.475 15 C -0.131 4.131 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.265 4.265 19 H 0.060 0.940 20 C -0.044 4.044 21 N -0.928 5.928 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.179 3.821 27 C -0.132 4.132 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.411 0.589 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.418 0.582 35 H 0.418 0.582 36 H 0.202 0.798 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.002 0.998 41 H 0.250 0.750 42 H 0.057 0.943 43 H 0.005 0.995 44 H 0.072 0.928 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 15.933 0.147 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.098 3.902 3 N -0.335 5.335 4 C 0.350 3.650 5 O -0.430 6.430 6 C -0.046 4.046 7 C -0.140 4.140 8 C -0.046 4.046 9 C -0.181 4.181 10 C 0.357 3.643 11 N -0.388 5.388 12 O -0.457 6.457 13 C -0.021 4.021 14 N -0.186 5.186 15 C -0.171 4.171 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.395 4.395 19 H 0.078 0.922 20 C -0.240 4.240 21 N -0.574 5.574 22 Si 0.793 3.207 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.054 3.946 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.248 0.752 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.251 0.749 35 H 0.251 0.749 36 H 0.219 0.781 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.091 0.909 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.750 15.353 0.606 17.682 hybrid contribution 1.205 -0.077 -0.187 1.222 sum -7.544 15.276 0.419 17.043 Atomic orbital electron populations 1.22123 0.93040 1.03000 1.02699 1.20322 0.94234 0.79898 0.95792 1.46027 1.51477 1.11458 1.24566 1.18107 0.80145 0.84537 0.82246 1.90685 1.39278 1.76497 1.36524 1.21421 0.95862 0.94735 0.92605 1.22212 0.99649 0.93135 0.99009 1.21935 0.90984 0.94885 0.96814 1.21225 1.02743 0.95672 0.98476 1.18001 0.78060 0.86223 0.82024 1.43575 1.52426 1.18531 1.24315 1.90823 1.60154 1.55061 1.39643 1.23502 0.94666 0.86734 0.97184 1.67605 1.08824 1.17729 1.24482 1.22254 0.96351 1.00207 0.98275 1.20839 0.92992 0.94874 0.88599 1.44266 1.48294 1.39484 1.00852 1.19464 1.10344 1.03559 1.06141 0.92212 1.25692 0.98184 1.00230 0.99927 1.70161 1.38486 1.30444 1.18310 0.85322 0.77362 0.80199 0.77850 1.21049 1.22105 1.19918 1.20576 0.89682 0.95513 0.88849 1.22333 0.97873 1.00612 0.96286 0.91766 0.90800 0.91710 0.75220 0.82036 0.81623 0.74936 0.74897 0.78139 0.90750 0.91455 0.93934 0.98027 0.94045 0.92417 0.97676 0.90929 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.40 71.98 0.60 -3.54 16 2 C 0.18 5.94 0.66 3.63 0.00 5.94 16 3 N -0.69 -21.78 4.09 -425.18 -1.74 -23.52 16 4 C 0.56 17.70 7.24 86.93 0.63 18.33 16 5 O -0.55 -18.90 12.53 -3.69 -0.05 -18.95 16 6 C 0.09 2.43 6.75 41.96 0.28 2.71 16 7 C -0.12 -2.66 9.62 22.58 0.22 -2.44 16 8 C -0.02 -0.38 9.71 22.72 0.22 -0.16 16 9 C -0.18 -3.12 5.90 -19.93 -0.12 -3.24 16 10 C 0.57 9.80 8.06 86.83 0.70 10.50 16 11 N -0.82 -6.66 8.83 -175.50 -1.55 -8.21 16 12 O -0.58 -14.46 17.25 -3.82 -0.07 -14.52 16 13 C 0.14 2.41 10.71 85.12 0.91 3.32 16 14 N -0.48 -11.59 9.52 -183.90 -1.75 -13.34 16 15 C -0.13 -4.79 4.67 30.67 0.14 -4.65 16 16 C 0.15 6.69 6.26 86.36 0.54 7.23 16 17 N -0.61 -30.11 2.99 -699.10 -2.09 -32.20 16 18 C -0.26 -14.55 9.58 84.03 0.81 -13.74 16 19 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 20 C -0.04 -2.44 4.91 84.86 0.42 -2.02 16 21 N -0.93 -53.14 11.19 21.65 0.24 -52.89 16 22 Si 0.96 44.35 29.59 68.60 2.03 46.38 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 C 0.18 8.15 5.04 86.36 0.43 8.59 16 27 C -0.13 -4.58 4.96 30.67 0.15 -4.43 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.93 6.17 -2.38 -0.01 1.91 16 31 H 0.41 13.17 6.59 -92.71 -0.61 12.56 16 32 H 0.16 3.36 7.63 -2.91 -0.02 3.34 16 33 H 0.17 2.76 7.73 -2.91 -0.02 2.73 16 34 H 0.42 1.03 6.89 -92.71 -0.64 0.39 16 35 H 0.42 2.31 8.93 -92.71 -0.83 1.48 16 36 H 0.20 1.67 6.41 -2.91 -0.02 1.65 16 37 H 0.07 2.72 6.20 -2.39 -0.01 2.71 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 1.89 7.93 -2.38 -0.02 1.87 16 40 H 0.00 0.08 7.74 -2.39 -0.02 0.06 16 41 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 42 H 0.06 3.00 6.03 -2.39 -0.01 2.98 16 43 H 0.01 0.25 6.94 -2.38 -0.02 0.23 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -72.31 361.84 -0.04 -72.34 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.01 Total: 22.49 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 5.94 Total: 22.41 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -6.89 Total: -130.15 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.11 Total: -33.47 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.31 -0.04 -72.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045650090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.553 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds