Wall clock time and date at job start Tue Mar 31 2020 17:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32218 * 120.50653 * 2 1 4 4 C 1.31908 * 121.14031 * 180.25731 * 3 2 1 5 5 N 1.31758 * 122.19593 * 359.47417 * 4 3 2 6 6 C 1.32750 * 120.86866 * 0.26519 * 5 4 3 7 7 O 1.35274 * 120.61484 * 180.02562 * 6 5 4 8 8 C 1.39758 * 120.51111 * 179.74609 * 2 1 3 9 9 C 1.47535 * 120.97964 * 0.02628 * 8 2 1 10 10 O 1.21592 * 119.99804 * 269.97739 * 9 8 2 11 11 N 1.35027 * 120.00454 * 89.97323 * 9 8 2 12 12 C 1.44785 * 119.89420 * 0.38593 * 11 9 8 13 13 C 1.51410 * 113.20498 * 266.67289 * 12 11 9 14 14 C 1.51205 * 114.25348 * 294.79113 * 13 12 11 15 15 H 1.09665 * 110.76935 * 179.53502 * 14 13 12 16 16 C 1.54141 * 108.51417 * 301.61278 * 14 13 12 17 17 C 1.54028 * 104.66144 * 91.63760 * 16 14 13 18 18 C 1.51957 * 105.55650 * 12.43839 * 17 16 14 19 19 H 1.09484 * 108.23523 * 122.31399 * 18 17 16 20 20 C 1.49156 * 119.99340 * 180.02562 * 11 9 8 21 21 N 1.47822 * 109.50034 * 4.77152 * 18 17 16 22 22 C 1.37092 * 127.15656 * 158.86189 * 21 18 17 23 23 H 1.08007 * 119.99761 * 180.02562 * 22 21 18 24 24 C 1.38807 * 120.00303 * 0.02931 * 22 21 18 25 25 N 1.31626 * 119.99727 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00411 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46979 * 59.99899 * 26 24 22 28 28 H 1.48496 * 109.47405 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47357 * 300.00324 * 26 24 22 30 30 H 1.09004 * 109.46856 * 270.25547 * 1 2 3 31 31 H 1.09000 * 109.47058 * 30.24983 * 1 2 3 32 32 H 1.08999 * 109.47232 * 150.25075 * 1 2 3 33 33 H 1.08002 * 118.90626 * 179.76119 * 4 3 2 34 34 H 0.96701 * 114.00550 * 89.99370 * 7 6 5 35 35 H 1.09443 * 108.34268 * 27.01044 * 12 11 9 36 36 H 1.08843 * 109.29321 * 144.50489 * 12 11 9 37 37 H 1.09318 * 108.50649 * 173.55867 * 13 12 11 38 38 H 1.09186 * 108.78434 * 56.45953 * 13 12 11 39 39 H 1.09254 * 110.74015 * 332.39611 * 16 14 13 40 40 H 1.09345 * 110.56506 * 210.60207 * 16 14 13 41 41 H 1.09057 * 110.65596 * 252.73095 * 17 16 14 42 42 H 1.09330 * 110.19781 * 131.39539 * 17 16 14 43 43 H 1.09214 * 109.48184 * 257.97146 * 20 11 9 44 44 H 1.09211 * 109.47516 * 17.31277 * 20 11 9 45 45 H 0.97001 * 119.99990 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 -0.0051 5 7 4.2116 0.0466 -0.0001 6 6 3.6234 -1.1434 0.0050 7 8 4.3618 -2.2768 0.0106 8 6 2.2166 -1.2040 0.0053 9 6 1.5124 -2.5005 0.0105 10 8 1.2222 -3.0305 1.0657 11 7 1.1901 -3.0985 -1.1564 12 6 1.5441 -2.4694 -2.4115 13 6 0.4394 -1.6015 -2.9763 14 6 -0.8043 -2.3620 -3.3777 15 1 -1.5677 -1.6795 -3.7701 16 6 -0.4138 -3.4180 -4.4305 17 6 -0.1016 -4.6860 -3.6137 18 6 -0.6192 -4.4060 -2.2127 19 1 -1.3478 -5.1816 -1.9552 20 6 0.4777 -4.4089 -1.1509 21 7 -1.3141 -3.1014 -2.1949 22 6 -2.2411 -2.6694 -1.2820 23 1 -2.6790 -1.6870 -1.3806 24 6 -2.6169 -3.4944 -0.2309 25 7 -2.0829 -4.6914 -0.1104 26 14 -3.8795 -2.9055 1.0135 27 1 -5.1570 -2.6056 0.3184 28 1 -4.1059 -3.9655 2.0286 29 1 -3.3799 -1.6774 1.6824 30 1 -0.3633 0.0046 1.0277 31 1 -0.3633 0.8877 -0.5177 32 1 -0.3634 -0.8922 -0.5099 33 1 4.0088 2.1049 -0.0088 34 1 4.5762 -2.6023 0.8956 35 1 2.4265 -1.8434 -2.2462 36 1 1.8067 -3.2371 -3.1371 37 1 0.8249 -1.0772 -3.8547 38 1 0.1663 -0.8512 -2.2315 39 1 0.4656 -3.0964 -4.9933 40 1 -1.2445 -3.6006 -5.1177 41 1 0.9719 -4.8772 -3.5954 42 1 -0.6199 -5.5481 -4.0421 43 1 1.1884 -5.2108 -1.3620 44 1 0.0345 -4.5782 -0.1673 45 1 -2.3457 -5.2681 0.6239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045832670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:01 Heat of formation + Delta-G solvation = 20.913300 kcal Electronic energy + Delta-G solvation = -31649.854945 eV Core-core repulsion = 27669.338220 eV Total energy + Delta-G solvation = -3980.516725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36881 -39.57422 -37.91886 -37.61646 -34.39815 -33.99188 -32.97633 -32.04290 -31.38423 -29.42593 -28.65704 -27.19086 -25.82353 -24.99899 -23.71543 -22.77767 -22.16007 -20.03586 -19.28457 -18.88967 -18.67915 -17.94299 -17.09828 -16.61265 -16.20785 -15.56397 -15.03386 -14.85516 -14.63663 -14.28414 -14.07131 -13.87873 -13.53263 -13.18999 -12.90332 -12.66395 -12.53340 -12.40338 -12.17993 -11.94491 -11.86268 -11.49110 -11.36581 -11.22132 -11.13746 -10.93718 -10.82099 -10.75291 -10.30091 -10.19968 -9.91697 -9.73891 -9.61068 -9.51374 -9.44885 -9.31550 -9.03084 -8.67221 -7.79076 -6.89380 -5.73271 -3.10880 0.66914 0.92305 3.02364 3.27427 3.39260 3.43716 3.46580 3.51534 3.79537 4.03406 4.30549 4.44384 4.77097 5.03671 5.17316 5.24387 5.26064 5.41370 5.45753 5.51215 5.61628 5.67388 5.82613 5.85260 5.88570 5.97205 6.05725 6.09904 6.16624 6.24696 6.35842 6.40533 6.55638 6.58918 6.65386 6.76574 6.84079 6.95212 6.98553 7.21916 7.26917 7.46408 7.60445 7.80831 7.98760 8.17511 8.23113 8.78215 9.15418 9.75413 10.45607 11.33756 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.006171 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.531536 B = 4536.012472 C = 5305.189880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.230 3.770 3 N -0.527 5.527 4 C 0.321 3.679 5 N -0.546 5.546 6 C 0.385 3.615 7 O -0.470 6.470 8 C -0.229 4.229 9 C 0.573 3.427 10 O -0.531 6.531 11 N -0.564 5.564 12 C 0.125 3.875 13 C -0.156 4.156 14 C 0.155 3.845 15 H 0.058 0.942 16 C -0.126 4.126 17 C -0.130 4.130 18 C 0.155 3.845 19 H 0.106 0.894 20 C 0.115 3.885 21 N -0.579 5.579 22 C -0.218 4.218 23 H 0.076 0.924 24 C 0.000 4.000 25 N -0.913 5.913 26 Si 0.908 3.092 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.202 0.798 34 H 0.411 0.589 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.028 0.972 44 H 0.128 0.872 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.303 5.770 -4.567 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 N -0.243 5.243 4 C 0.034 3.966 5 N -0.272 5.272 6 C 0.198 3.802 7 O -0.278 6.278 8 C -0.238 4.238 9 C 0.357 3.643 10 O -0.408 6.408 11 N -0.294 5.294 12 C 0.000 4.000 13 C -0.197 4.197 14 C 0.048 3.952 15 H 0.076 0.924 16 C -0.165 4.165 17 C -0.169 4.169 18 C 0.048 3.952 19 H 0.124 0.876 20 C -0.006 4.006 21 N -0.301 5.301 22 C -0.345 4.345 23 H 0.094 0.906 24 C -0.197 4.197 25 N -0.560 5.560 26 Si 0.739 3.261 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.218 0.782 34 H 0.271 0.729 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.146 0.854 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.419 6.189 -4.389 12.095 hybrid contribution -0.630 -0.361 1.051 1.278 sum 8.789 5.828 -3.338 11.062 Atomic orbital electron populations 1.21238 0.86263 1.06237 1.04741 1.21946 0.98068 0.85778 0.85729 1.68298 1.09981 1.29772 1.16267 1.24848 0.86489 0.95905 0.89380 1.67984 1.42758 0.98676 1.17769 1.19369 0.85663 0.85767 0.89441 1.84607 1.72576 1.36217 1.34425 1.22031 0.94826 0.97978 1.09012 1.17477 0.79146 0.82862 0.84773 1.90795 1.54571 1.64759 1.30704 1.47949 1.55362 1.22411 1.03724 1.20630 0.95794 0.96702 0.86870 1.22175 0.97978 0.99393 1.00167 1.20990 0.92604 0.93008 0.88635 0.92380 1.22495 1.00007 0.96447 0.97536 1.22218 0.99704 0.97205 0.97735 1.20986 0.93510 0.91638 0.89029 0.87615 1.23349 0.91999 0.79084 1.06208 1.44861 1.46240 1.12638 1.26392 1.18867 1.13906 0.99334 1.02423 0.90569 1.24632 1.00020 0.96487 0.98517 1.69651 1.45023 1.08548 1.32770 0.86259 0.81083 0.77677 0.81113 1.21410 1.21603 1.21236 0.89193 0.89726 0.86491 0.78188 0.72854 0.93458 0.91043 0.92932 0.91985 0.92397 0.92420 0.92687 0.92439 0.95346 0.85424 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.75 36.01 0.32 -1.89 16 2 C 0.23 3.89 6.58 -81.86 -0.54 3.35 16 3 N -0.53 -7.94 10.36 -10.52 -0.11 -8.05 16 4 C 0.32 4.20 12.27 -92.09 -1.13 3.07 16 5 N -0.55 -8.00 10.45 -14.32 -0.15 -8.15 16 6 C 0.39 6.11 7.39 -16.18 -0.12 5.99 16 7 O -0.47 -6.71 13.10 -17.52 -0.23 -6.94 16 8 C -0.23 -4.06 3.88 -104.57 -0.41 -4.47 16 9 C 0.57 11.84 5.39 -12.36 -0.07 11.78 16 10 O -0.53 -12.93 16.56 5.28 0.09 -12.85 16 11 N -0.56 -11.13 2.62 -174.86 -0.46 -11.59 16 12 C 0.12 2.11 4.86 -5.76 -0.03 2.09 16 13 C -0.16 -2.59 5.01 -28.44 -0.14 -2.73 16 14 C 0.16 2.81 3.83 -67.13 -0.26 2.55 16 15 H 0.06 1.05 8.20 -51.55 -0.42 0.63 16 16 C -0.13 -1.98 5.99 -25.60 -0.15 -2.13 16 17 C -0.13 -2.21 5.72 -26.72 -0.15 -2.36 16 18 C 0.16 3.28 2.27 -67.91 -0.15 3.13 16 19 H 0.11 2.61 6.24 -51.65 -0.32 2.29 16 20 C 0.12 2.48 5.66 -2.75 -0.02 2.47 16 21 N -0.58 -12.72 2.40 -156.25 -0.38 -13.09 16 22 C -0.22 -5.38 9.49 -14.99 -0.14 -5.52 16 23 H 0.08 1.85 7.83 -52.48 -0.41 1.44 16 24 C 0.00 -0.01 5.49 -17.43 -0.10 -0.10 16 25 N -0.91 -24.32 8.22 55.49 0.46 -23.87 16 26 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.12 2.36 4.70 -51.93 -0.24 2.11 16 33 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.41 4.10 9.06 45.56 0.41 4.51 16 35 H 0.05 0.79 6.32 -51.68 -0.33 0.46 16 36 H 0.07 1.14 5.46 -52.02 -0.28 0.86 16 37 H 0.05 0.75 8.16 -51.75 -0.42 0.32 16 38 H 0.06 1.10 4.82 -51.82 -0.25 0.85 16 39 H 0.06 0.78 7.71 -51.79 -0.40 0.38 16 40 H 0.06 0.88 8.17 -51.73 -0.42 0.45 16 41 H 0.05 0.86 6.45 -51.90 -0.33 0.53 16 42 H 0.06 0.93 8.17 -51.74 -0.42 0.51 16 43 H 0.03 0.57 7.96 -51.81 -0.41 0.15 16 44 H 0.13 3.28 5.08 -51.81 -0.26 3.02 16 45 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -30.08 344.15 -8.63 -38.71 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.93 Total: 9.01 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: -3.09 Total: 15.21 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.64 Total: -64.75 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.14 Total: -19.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.08 -8.63 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045832670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.628 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds