Wall clock time and date at job start Tue Mar 31 2020 16:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 110.88424 * 2 1 4 4 C 1.34776 * 120.00260 * 62.42841 * 3 2 1 5 5 O 1.21483 * 119.99580 * 359.97438 * 4 3 2 6 6 C 1.48442 * 120.00255 * 180.02562 * 4 3 2 7 7 C 1.39189 * 120.51638 * 180.02562 * 6 4 3 8 8 C 1.39597 * 118.20406 * 180.02562 * 7 6 4 9 9 O 1.35512 * 120.49043 * 179.97438 * 8 7 6 10 10 N 1.32670 * 119.01997 * 0.25156 * 8 7 6 11 11 C 1.31860 * 120.93569 * 359.48177 * 10 8 7 12 12 C 1.50706 * 119.00562 * 180.24717 * 11 10 8 13 13 C 1.53002 * 117.49731 * 9.02598 * 12 11 10 14 14 C 1.52998 * 117.49984 * 300.36680 * 12 11 10 15 15 N 1.31558 * 121.98819 * 0.53957 * 11 10 8 16 16 C 1.55158 * 111.03769 * 236.09815 * 2 1 3 17 17 C 1.54324 * 102.94445 * 206.40765 * 16 2 1 18 18 N 1.47027 * 107.26722 * 22.19076 * 17 16 2 19 19 C 1.36937 * 125.64843 * 181.02429 * 18 17 16 20 20 H 1.08003 * 120.00367 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99737 * 0.04431 * 19 18 17 22 22 N 1.31617 * 120.00280 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00078 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46884 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47533 * 119.99474 * 23 21 19 26 26 H 1.48500 * 109.47236 * 239.99973 * 23 21 19 27 27 C 1.47418 * 108.70531 * 1.06003 * 18 17 16 28 28 H 1.09004 * 109.47401 * 60.70387 * 1 2 3 29 29 H 1.09006 * 109.46885 * 180.70082 * 1 2 3 30 30 H 1.08999 * 109.47520 * 300.70041 * 1 2 3 31 31 H 0.97006 * 119.99857 * 242.42609 * 3 2 1 32 32 H 1.07995 * 120.89738 * 359.97438 * 7 6 4 33 33 H 0.96700 * 114.00230 * 89.99863 * 9 8 7 34 34 H 1.09000 * 115.54728 * 154.69854 * 12 11 10 35 35 H 1.09002 * 117.49801 * 359.97438 * 13 12 11 36 36 H 1.08995 * 117.49672 * 145.02149 * 13 12 11 37 37 H 1.08994 * 117.50039 * 214.98001 * 14 12 11 38 38 H 1.09003 * 117.49618 * 359.97438 * 14 12 11 39 39 H 1.09000 * 110.72121 * 324.77309 * 16 2 1 40 40 H 1.09004 * 110.72044 * 88.04240 * 16 2 1 41 41 H 1.09000 * 109.88145 * 262.77901 * 17 16 2 42 42 H 1.08998 * 109.88719 * 141.60709 * 17 16 2 43 43 H 0.96997 * 120.00408 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.37053 * 217.03004 * 27 18 17 45 45 H 1.09007 * 110.46241 * 94.75663 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0522 1.3687 0.0000 4 6 1.7877 2.1910 1.0346 5 8 1.1158 1.7972 1.9670 6 6 2.3164 3.5781 1.0343 7 6 2.0503 4.4361 2.0975 8 6 2.5709 5.7303 2.0471 9 8 2.3400 6.6042 3.0567 10 7 3.2905 6.0940 0.9934 11 6 3.5246 5.2494 0.0083 12 6 4.3523 5.7067 -1.1652 13 6 5.0529 7.0620 -1.0501 14 6 3.8386 6.9033 -1.9685 15 7 3.0527 4.0214 0.0161 16 6 2.0870 -0.8077 -1.2020 17 6 3.4684 -1.2732 -0.6953 18 7 3.4275 -1.2419 0.7741 19 6 4.4643 -1.5649 1.6083 20 1 4.3332 -1.5100 2.6790 21 6 5.6839 -1.9625 1.0779 22 7 5.8437 -2.0295 -0.2268 23 14 7.0980 -2.4037 2.2159 24 1 6.6644 -2.2480 3.6277 25 1 7.5063 -3.8111 1.9755 26 1 8.2477 -1.5024 1.9494 27 6 2.0853 -0.8062 1.2005 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3633 -1.0277 0.0126 30 1 -0.3634 0.5247 0.8836 31 1 2.5884 1.6833 -0.7447 32 1 1.4563 4.1096 2.9383 33 1 3.0050 6.5793 3.7583 34 1 4.8688 4.9178 -1.7120 35 1 4.9148 7.6230 -0.1258 36 1 6.0302 7.1649 -1.5215 37 1 4.0175 6.9018 -3.0436 38 1 2.9018 7.3594 -1.6484 39 1 1.4481 -1.6634 -1.4209 40 1 2.1929 -0.1698 -2.0794 41 1 4.2432 -0.5984 -1.0590 42 1 3.6666 -2.2883 -1.0391 43 1 6.6960 -2.3070 -0.5974 44 1 2.1553 -0.1714 2.0839 45 1 1.4512 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046402207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:59 Heat of formation + Delta-G solvation = 36.599551 kcal Electronic energy + Delta-G solvation = -28938.961951 eV Core-core repulsion = 24959.125433 eV Total energy + Delta-G solvation = -3979.836518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58094 -39.80402 -38.19899 -37.49589 -36.77481 -34.06653 -33.46888 -31.79088 -31.53453 -30.00619 -28.69389 -25.91826 -25.62588 -25.07848 -23.66829 -22.58909 -22.35884 -20.73738 -20.14824 -19.25758 -19.12204 -18.20223 -17.18697 -16.66038 -16.10054 -15.77521 -15.66743 -15.48698 -14.91479 -14.73796 -14.61531 -14.21944 -13.94960 -13.68098 -13.27708 -12.83720 -12.56332 -12.42700 -12.11200 -11.96212 -11.84022 -11.73207 -11.68616 -11.08788 -10.95775 -10.92860 -10.88562 -10.73791 -10.69596 -10.54304 -10.38403 -10.09473 -10.02984 -9.87600 -9.66137 -9.49195 -9.33525 -8.69639 -8.56221 -6.79532 -5.70150 -3.02039 0.34137 0.56387 2.68011 2.88669 3.19468 3.39769 3.45712 3.46025 3.48027 3.49491 3.89509 4.24387 4.51030 4.57004 4.63807 4.68836 4.77566 4.89456 5.03909 5.21284 5.34199 5.37957 5.42857 5.47809 5.60196 5.60755 5.72183 5.85758 5.88701 5.98386 5.99192 6.11476 6.12806 6.31366 6.38419 6.49376 6.60126 6.63936 6.79230 7.01230 7.05198 7.55391 7.58289 7.67972 7.81413 7.86400 8.26792 8.36084 9.24203 9.84213 10.50038 11.41933 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.003751 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.254014 B = 7462.599939 C = 8199.158376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.152 3.848 3 N -0.672 5.672 4 C 0.571 3.429 5 O -0.523 6.523 6 C 0.161 3.839 7 C -0.193 4.193 8 C 0.364 3.636 9 O -0.473 6.473 10 N -0.528 5.528 11 C 0.375 3.625 12 C -0.104 4.104 13 C -0.152 4.152 14 C -0.154 4.154 15 N -0.492 5.492 16 C -0.146 4.146 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.131 3.869 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.410 0.590 32 H 0.166 0.834 33 H 0.410 0.590 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.055 0.945 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 16.701 -2.370 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.066 3.934 3 N -0.321 5.321 4 C 0.354 3.646 5 O -0.399 6.399 6 C 0.014 3.986 7 C -0.218 4.218 8 C 0.175 3.825 9 O -0.280 6.280 10 N -0.253 5.253 11 C 0.108 3.892 12 C -0.124 4.124 13 C -0.190 4.190 14 C -0.192 4.192 15 N -0.210 5.210 16 C -0.184 4.184 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.219 1.219 27 C 0.005 3.995 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.246 0.754 32 H 0.184 0.816 33 H 0.270 0.730 34 H 0.155 0.845 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.077 16.710 -2.715 18.349 hybrid contribution 1.030 -0.443 1.309 1.724 sum -6.047 16.267 -1.406 17.412 Atomic orbital electron populations 1.21997 0.94080 1.02428 1.02325 1.21633 0.92732 0.80258 0.98825 1.45665 1.52311 1.12255 1.21869 1.17572 0.80730 0.83098 0.83217 1.90755 1.39150 1.75049 1.34965 1.21745 0.92127 0.95449 0.89278 1.22962 1.03617 0.92930 1.02263 1.19275 0.89489 0.85824 0.87869 1.84711 1.51693 1.59920 1.31714 1.67533 1.16383 1.38641 1.02751 1.21853 0.91492 0.84193 0.91666 1.20714 1.02467 0.93494 0.95680 1.23046 0.96693 0.96863 1.02385 1.23008 0.99175 0.98995 0.98045 1.68099 1.10132 1.16708 1.26061 1.23236 1.00522 0.98859 0.95805 1.21168 0.90010 0.99971 0.83633 1.44450 1.07734 1.78888 1.01856 1.19098 0.89370 1.37578 0.88991 0.90567 1.24755 0.97703 1.02002 0.95990 1.69952 1.23981 1.54006 1.09151 0.86079 0.82486 0.77746 0.79705 1.20573 1.21735 1.21872 1.21888 0.87701 0.94931 0.95026 0.92959 0.91506 0.91064 0.75380 0.81637 0.72999 0.84544 0.87273 0.87942 0.87678 0.88611 0.90656 0.91568 0.93523 0.93732 0.93902 0.92717 0.95438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.62 37.16 0.32 -1.92 16 2 C 0.15 2.69 0.82 -129.67 -0.11 2.59 16 3 N -0.67 -11.54 5.17 -46.37 -0.24 -11.78 16 4 C 0.57 9.94 7.22 -12.06 -0.09 9.86 16 5 O -0.52 -9.96 13.19 5.38 0.07 -9.89 16 6 C 0.16 2.50 6.79 -82.70 -0.56 1.94 16 7 C -0.19 -2.60 9.68 -38.72 -0.37 -2.97 16 8 C 0.36 4.50 7.84 -16.68 -0.13 4.37 16 9 O -0.47 -4.54 13.58 -18.23 -0.25 -4.79 16 10 N -0.53 -6.90 9.35 -10.79 -0.10 -7.00 16 11 C 0.38 5.06 7.31 -157.34 -1.15 3.91 16 12 C -0.10 -1.11 6.23 -91.77 -0.57 -1.68 16 13 C -0.15 -1.32 10.01 -26.69 -0.27 -1.59 16 14 C -0.15 -1.32 10.24 -26.69 -0.27 -1.59 16 15 N -0.49 -7.37 9.59 -7.38 -0.07 -7.44 16 16 C -0.15 -2.58 5.99 -24.90 -0.15 -2.73 16 17 C 0.18 4.18 5.36 -3.06 -0.02 4.16 16 18 N -0.60 -15.46 3.39 -170.07 -0.58 -16.04 16 19 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 20 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.13 2.86 6.11 -2.53 -0.02 2.85 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.07 1.14 6.45 -51.93 -0.34 0.81 16 31 H 0.41 6.73 7.87 -40.82 -0.32 6.41 16 32 H 0.17 2.05 7.73 -52.49 -0.41 1.64 16 33 H 0.41 1.85 9.06 45.56 0.41 2.26 16 34 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.11 1.04 7.54 -51.93 -0.39 0.65 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 40 H 0.07 1.02 8.05 -51.93 -0.42 0.61 16 41 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 42 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.05 1.28 6.32 -51.93 -0.33 0.95 16 45 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.56 372.37 -9.11 -42.68 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.48 Total: 7.25 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -3.63 Total: 10.40 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.42 Total: -68.64 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.18 Total: -14.68 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.56 -9.11 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046402207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.275 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds