Wall clock time and date at job start Tue Mar 31 2020 16:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 110.63979 * 2 1 4 4 C 1.34773 * 119.99826 * 300.69433 * 3 2 1 5 5 O 1.21484 * 119.99805 * 0.02562 * 4 3 2 6 6 C 1.48446 * 120.00022 * 180.02562 * 4 3 2 7 7 C 1.39187 * 120.51616 * 179.97438 * 6 4 3 8 8 C 1.39600 * 118.20455 * 180.02562 * 7 6 4 9 9 O 1.35517 * 120.49339 * 179.97438 * 8 7 6 10 10 N 1.32666 * 119.01939 * 359.97438 * 8 7 6 11 11 C 1.31865 * 120.94035 * 0.02562 * 10 8 7 12 12 C 1.50699 * 119.00976 * 180.02562 * 11 10 8 13 13 C 1.52997 * 117.49688 * 8.72707 * 12 11 10 14 14 C 1.52997 * 117.50049 * 300.06667 * 12 11 10 15 15 N 1.31554 * 121.98466 * 0.02562 * 11 10 8 16 16 C 1.55161 * 110.71781 * 123.13740 * 2 1 3 17 17 C 1.55388 * 101.36440 * 153.95048 * 16 2 1 18 18 N 1.47420 * 104.87320 * 323.01600 * 17 16 2 19 19 C 1.36938 * 125.64810 * 204.10230 * 18 17 16 20 20 H 1.08003 * 119.99987 * 169.98510 * 19 18 17 21 21 C 1.38814 * 119.99741 * 349.97979 * 19 18 17 22 22 N 1.31613 * 120.00255 * 350.42509 * 21 19 18 23 23 Si 1.86802 * 119.99754 * 170.42471 * 21 19 18 24 24 H 1.48494 * 109.47281 * 94.14052 * 23 21 19 25 25 H 1.48501 * 109.46997 * 214.14492 * 23 21 19 26 26 H 1.48507 * 109.47229 * 334.13940 * 23 21 19 27 27 C 1.47018 * 108.70448 * 24.13363 * 18 17 16 28 28 H 1.08996 * 109.46956 * 59.30544 * 1 2 3 29 29 H 1.08998 * 109.46728 * 179.30207 * 1 2 3 30 30 H 1.09002 * 109.47593 * 299.30171 * 1 2 3 31 31 H 0.96999 * 120.00161 * 120.69992 * 3 2 1 32 32 H 1.07998 * 120.90056 * 359.97438 * 7 6 4 33 33 H 0.96697 * 113.99749 * 270.01949 * 9 8 7 34 34 H 1.09005 * 115.54909 * 154.39258 * 12 11 10 35 35 H 1.09003 * 117.50093 * 0.02562 * 13 12 11 36 36 H 1.08998 * 117.50115 * 145.01684 * 13 12 11 37 37 H 1.08998 * 117.50095 * 214.97871 * 14 12 11 38 38 H 1.08998 * 117.49837 * 0.02562 * 14 12 11 39 39 H 1.09008 * 111.00452 * 272.11910 * 16 2 1 40 40 H 1.08998 * 111.00691 * 35.96934 * 16 2 1 41 41 H 1.09005 * 110.33869 * 204.16703 * 17 16 2 42 42 H 1.08998 * 110.44153 * 81.91924 * 17 16 2 43 43 H 0.96998 * 120.00038 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.88520 * 239.52098 * 27 18 17 45 45 H 1.08994 * 110.01321 * 118.43109 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7264 2.2116 -1.0037 5 8 1.0093 1.8325 -1.9081 6 6 2.2501 3.6006 -1.0040 7 6 1.9268 4.4776 -2.0354 8 6 2.4462 5.7724 -1.9876 9 8 2.1618 6.6641 -2.9676 10 7 3.2225 6.1172 -0.9685 11 6 3.5055 5.2567 -0.0103 12 6 4.3914 5.6948 1.1274 13 6 4.7490 7.1800 1.2126 14 6 5.8069 6.1611 0.7813 15 7 3.0378 4.0271 -0.0175 16 6 2.0789 -0.7933 1.2152 17 6 3.4674 -1.2454 0.6839 18 7 3.2471 -1.5461 -0.7424 19 6 4.0078 -2.3901 -1.5068 20 1 3.6749 -2.6713 -2.4950 21 6 5.2067 -2.8842 -1.0115 22 7 5.7063 -2.4007 0.1060 23 14 6.1110 -4.2356 -1.9311 24 1 7.1219 -3.6290 -2.8340 25 1 6.7892 -5.1285 -0.9574 26 1 5.1406 -5.0237 -2.7328 27 6 2.0761 -0.7892 -1.2084 28 1 -0.3633 0.5246 -0.8837 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3634 0.5029 0.8962 31 1 2.6187 1.6737 0.7223 32 1 1.2920 4.1645 -2.8511 33 1 2.7899 6.6542 -3.7027 34 1 4.2541 5.1556 2.0647 35 1 4.3432 7.8402 0.4461 36 1 4.8475 7.6178 2.2059 37 1 6.6009 5.9290 1.4911 38 1 6.0972 6.1514 -0.2692 39 1 2.1819 -0.1488 2.0883 40 1 1.4469 -1.6528 1.4385 41 1 3.8031 -2.1378 1.2123 42 1 4.1969 -0.4431 0.7942 43 1 6.5439 -2.7462 0.4522 44 1 1.3141 -1.4755 -1.5780 45 1 2.3687 -0.0994 -2.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046402210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:01 Heat of formation + Delta-G solvation = 36.358831 kcal Electronic energy + Delta-G solvation = -28730.506635 eV Core-core repulsion = 24750.659678 eV Total energy + Delta-G solvation = -3979.846956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63549 -39.87456 -38.23861 -37.52707 -36.81344 -34.12175 -33.51882 -31.80400 -31.58474 -30.00581 -28.68453 -25.96534 -25.65917 -25.12358 -23.64995 -22.59631 -22.38399 -20.72692 -20.33495 -19.24313 -19.15228 -18.26680 -17.21293 -16.74829 -16.19524 -15.75225 -15.63893 -15.47688 -15.05618 -14.76067 -14.66696 -14.14287 -14.02656 -13.73904 -13.17389 -12.83685 -12.60903 -12.46766 -12.28164 -12.08555 -11.75056 -11.74716 -11.61128 -11.12197 -11.03623 -10.96625 -10.81554 -10.76711 -10.72277 -10.53507 -10.41070 -10.21470 -10.08201 -9.86027 -9.68977 -9.53094 -9.38885 -8.73570 -8.57374 -6.78030 -5.74082 -3.05571 0.28446 0.51327 2.60600 2.84006 3.15511 3.39367 3.40236 3.45933 3.47921 3.48193 3.80679 4.20913 4.50291 4.52494 4.60738 4.63478 4.74959 4.86107 5.04385 5.17890 5.32276 5.34928 5.43620 5.47360 5.52366 5.57729 5.70891 5.82777 5.84831 5.96272 5.98314 6.12076 6.18049 6.28055 6.40268 6.44934 6.55567 6.64438 6.79030 6.97144 7.05138 7.46003 7.54876 7.62246 7.77283 7.80232 8.24804 8.30700 9.20705 9.82365 10.49868 11.39294 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.003315 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.279601 B = 8445.129493 C = 9231.600570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 N -0.678 5.678 4 C 0.570 3.430 5 O -0.521 6.521 6 C 0.160 3.840 7 C -0.193 4.193 8 C 0.365 3.635 9 O -0.472 6.472 10 N -0.527 5.527 11 C 0.375 3.625 12 C -0.104 4.104 13 C -0.153 4.153 14 C -0.152 4.152 15 N -0.493 5.493 16 C -0.148 4.148 17 C 0.173 3.827 18 N -0.603 5.603 19 C -0.226 4.226 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.137 3.863 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.410 0.590 32 H 0.166 0.834 33 H 0.410 0.590 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.252 0.748 44 H 0.033 0.967 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 18.121 2.321 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.071 3.929 3 N -0.328 5.328 4 C 0.352 3.648 5 O -0.396 6.396 6 C 0.013 3.987 7 C -0.217 4.217 8 C 0.176 3.824 9 O -0.280 6.280 10 N -0.253 5.253 11 C 0.108 3.892 12 C -0.124 4.124 13 C -0.191 4.191 14 C -0.190 4.190 15 N -0.211 5.211 16 C -0.187 4.187 17 C 0.048 3.952 18 N -0.329 5.329 19 C -0.355 4.355 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.011 3.989 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.246 0.754 32 H 0.184 0.816 33 H 0.270 0.730 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.659 18.082 2.692 19.137 hybrid contribution 0.704 -0.776 -1.264 1.641 sum -4.955 17.306 1.428 18.058 Atomic orbital electron populations 1.22063 0.93910 1.02555 1.02466 1.21468 0.93237 0.79842 0.98359 1.45848 1.50155 1.11927 1.24905 1.17608 0.81100 0.83094 0.82958 1.90769 1.37155 1.75901 1.35768 1.21742 0.91951 0.95482 0.89568 1.22972 1.03719 0.92785 1.02268 1.19281 0.89183 0.85753 0.88176 1.84720 1.53063 1.58862 1.31333 1.67537 1.15713 1.38391 1.03616 1.21867 0.91815 0.83958 0.91548 1.20693 0.96305 0.99414 0.95983 1.23055 1.01905 0.90568 1.03573 1.23016 0.90660 1.02308 1.03012 1.68099 1.10251 1.17214 1.25522 1.23438 1.01114 0.98991 0.95130 1.21498 0.89434 0.99528 0.84704 1.44472 1.30831 1.50773 1.06820 1.19027 0.99561 1.18479 0.98391 0.90683 1.24792 0.96801 1.00624 0.98143 1.69941 1.20553 1.43856 1.22290 0.86141 0.79590 0.81659 0.78613 1.21711 1.21608 1.20587 1.21595 0.90563 0.93111 0.93670 0.90780 0.91445 0.92981 0.75350 0.81596 0.73003 0.84668 0.87268 0.88003 0.87542 0.88535 0.91496 0.90302 0.91097 0.95488 0.93774 0.94932 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.41 37.16 0.31 -2.01 16 2 C 0.16 2.78 0.80 -129.98 -0.10 2.68 16 3 N -0.68 -11.34 5.14 -46.65 -0.24 -11.58 16 4 C 0.57 9.61 7.04 -12.06 -0.08 9.53 16 5 O -0.52 -9.71 13.36 5.38 0.07 -9.63 16 6 C 0.16 2.37 6.79 -82.69 -0.56 1.81 16 7 C -0.19 -2.48 9.68 -38.72 -0.37 -2.86 16 8 C 0.37 4.31 7.84 -16.68 -0.13 4.18 16 9 O -0.47 -4.31 13.58 -18.24 -0.25 -4.56 16 10 N -0.53 -6.60 9.35 -10.79 -0.10 -6.70 16 11 C 0.38 4.83 7.31 -157.34 -1.15 3.68 16 12 C -0.10 -1.05 6.23 -91.78 -0.57 -1.62 16 13 C -0.15 -1.25 10.01 -26.70 -0.27 -1.52 16 14 C -0.15 -1.31 10.24 -26.70 -0.27 -1.59 16 15 N -0.49 -7.05 9.59 -7.38 -0.07 -7.12 16 16 C -0.15 -2.63 6.11 -24.32 -0.15 -2.77 16 17 C 0.17 4.08 5.41 -2.27 -0.01 4.07 16 18 N -0.60 -15.55 3.40 -169.78 -0.58 -16.13 16 19 C -0.23 -6.41 10.24 -15.06 -0.15 -6.56 16 20 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 21 C -0.01 -0.20 5.40 -17.43 -0.09 -0.30 16 22 N -0.92 -26.82 10.68 55.49 0.59 -26.22 16 23 Si 0.91 22.21 29.56 -169.99 -5.03 17.18 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.14 3.03 6.16 -3.07 -0.02 3.02 16 28 H 0.07 1.21 6.20 -51.93 -0.32 0.89 16 29 H 0.07 0.98 8.12 -51.93 -0.42 0.55 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.41 6.45 7.86 -40.82 -0.32 6.13 16 32 H 0.17 1.96 7.73 -52.49 -0.41 1.55 16 33 H 0.41 1.63 9.06 45.56 0.41 2.05 16 34 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.11 0.99 7.53 -51.93 -0.39 0.60 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.01 8.06 -51.92 -0.42 0.60 16 40 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 41 H 0.07 1.85 6.94 -51.93 -0.36 1.49 16 42 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 45 H 0.03 0.76 6.67 -51.93 -0.35 0.41 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -33.62 372.60 -9.09 -42.71 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.48 Total: 6.71 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -3.63 Total: 9.73 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -0.40 Total: -67.76 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.18 Total: -14.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.62 -9.09 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046402210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.072 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds