Wall clock time and date at job start Tue Mar 31 2020 16:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00325 * 2 1 4 4 O 1.21494 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.48329 * 120.00282 * 180.02562 * 3 2 1 6 6 C 1.39301 * 119.57232 * 179.97438 * 5 3 2 7 7 C 1.38452 * 119.18925 * 179.71914 * 6 5 3 8 8 C 1.39871 * 118.35921 * 0.56303 * 7 6 5 9 9 C 1.48001 * 120.46381 * 179.71081 * 8 7 6 10 10 O 1.21530 * 120.00223 * 359.72126 * 9 8 7 11 11 N 1.34782 * 119.99840 * 179.71977 * 9 8 7 12 12 C 1.46499 * 119.99645 * 179.97438 * 11 9 8 13 13 C 1.53006 * 110.88689 * 59.30521 * 12 11 9 14 14 C 1.55154 * 111.03617 * 183.20536 * 12 11 9 15 15 C 1.54326 * 102.94329 * 82.58584 * 14 12 11 16 16 N 1.47024 * 107.26637 * 22.19553 * 15 14 12 17 17 C 1.36940 * 125.64510 * 181.02231 * 16 15 14 18 18 H 1.07997 * 119.99779 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00041 * 0.04137 * 17 16 15 20 20 N 1.31618 * 119.99891 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99858 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47581 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47335 * 119.99924 * 21 19 17 24 24 H 1.48503 * 109.47211 * 239.99930 * 21 19 17 25 25 C 1.47418 * 108.70570 * 1.05952 * 16 15 14 26 26 C 1.39732 * 119.07062 * 359.43546 * 8 7 6 27 27 N 1.31410 * 120.71986 * 0.29977 * 26 8 7 28 28 H 1.09002 * 109.47092 * 300.00302 * 1 2 3 29 29 H 1.08997 * 109.46960 * 60.00141 * 1 2 3 30 30 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 31 31 H 0.97007 * 120.00307 * 179.97438 * 2 1 3 32 32 H 1.08001 * 120.40354 * 359.97438 * 6 5 3 33 33 H 1.08006 * 120.81832 * 180.27393 * 7 6 5 34 34 H 0.96990 * 119.99843 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47002 * 297.56695 * 13 12 11 36 36 H 1.08993 * 109.46955 * 57.57132 * 13 12 11 37 37 H 1.09000 * 109.47050 * 177.56961 * 13 12 11 38 38 H 1.08997 * 110.72608 * 200.95393 * 14 12 11 39 39 H 1.08999 * 110.72184 * 324.22683 * 14 12 11 40 40 H 1.08996 * 109.88725 * 262.77774 * 15 14 12 41 41 H 1.09003 * 109.87783 * 141.60959 * 15 14 12 42 42 H 0.97001 * 120.00016 * 180.02562 * 20 19 17 43 43 H 1.09003 * 110.36751 * 217.03565 * 25 16 15 44 44 H 1.08999 * 110.46166 * 94.75728 * 25 16 15 45 45 H 1.08004 * 119.63544 * 180.27445 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5315 2.2194 -0.0005 5 6 3.6222 1.1672 -0.0006 6 6 4.3097 2.3787 -0.0011 7 6 5.6942 2.3695 0.0043 8 6 6.3503 1.1342 -0.0020 9 6 7.8289 1.0700 -0.0031 10 8 8.4817 2.0951 -0.0036 11 7 8.4515 -0.1254 -0.0034 12 6 9.9152 -0.1889 -0.0051 13 6 10.4932 0.5168 1.2233 14 6 10.4088 -1.6576 -0.0862 15 6 10.3367 -1.9635 -1.5971 16 7 10.3767 -0.6758 -2.3055 17 6 10.3148 -0.5097 -3.6634 18 1 10.3524 0.4825 -4.0883 19 6 10.2033 -1.6166 -4.4936 20 7 10.1576 -2.8257 -3.9758 21 14 10.1195 -1.3900 -6.3459 22 1 10.1903 0.0572 -6.6714 23 1 11.2591 -2.0974 -6.9832 24 1 8.8420 -1.9496 -6.8558 25 6 10.4954 0.4069 -1.3120 26 6 5.5903 -0.0383 -0.0014 27 7 4.2772 0.0128 -0.0009 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 3.7693 3.3138 -0.0015 33 1 6.2537 3.2933 0.0084 34 1 7.9306 -0.9435 -0.0034 35 1 10.2238 1.5727 1.1960 36 1 10.0887 0.0619 2.1275 37 1 11.5787 0.4186 1.2215 38 1 11.4336 -1.7406 0.2756 39 1 9.7466 -2.3185 0.4730 40 1 9.4068 -2.4838 -1.8261 41 1 11.1889 -2.5757 -1.8924 42 1 10.0801 -3.5992 -4.5560 43 1 9.9137 1.2740 -1.6246 44 1 11.5406 0.6826 -1.1719 45 1 6.0875 -0.9971 -0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046779277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:53 Heat of formation + Delta-G solvation = -0.378762 kcal Electronic energy + Delta-G solvation = -28433.476700 eV Core-core repulsion = 24452.036682 eV Total energy + Delta-G solvation = -3981.440018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06010 -39.95463 -38.94393 -37.29309 -34.99991 -34.11249 -32.87869 -32.50746 -31.35455 -29.95836 -28.74206 -27.61921 -25.73226 -25.00686 -23.86356 -23.65218 -21.65536 -20.79194 -20.23451 -19.22134 -18.80321 -17.83619 -17.07565 -16.71892 -15.83710 -15.72603 -15.38576 -15.27935 -14.93083 -14.82884 -14.65899 -14.03192 -13.97811 -13.69897 -13.43925 -13.32433 -13.04825 -12.94789 -12.66871 -12.60247 -12.12583 -11.97857 -11.86608 -11.72273 -10.94328 -10.91342 -10.69943 -10.53446 -10.43492 -10.20339 -10.14446 -10.05967 -9.94835 -9.69928 -9.59059 -9.43314 -9.36307 -8.75932 -8.59701 -6.83552 -5.73892 -3.05786 0.06746 0.92562 2.23678 2.79168 3.05426 3.23352 3.38427 3.45064 3.46918 3.71711 3.76510 4.44195 4.48530 4.52494 4.63707 4.74971 4.87745 4.93480 5.06597 5.16635 5.31248 5.36066 5.42708 5.43989 5.56210 5.67049 5.70039 5.78743 5.94477 6.02576 6.05938 6.10670 6.17574 6.28944 6.33860 6.46062 6.60316 6.75302 7.01124 7.04090 7.39721 7.50946 7.51800 7.70155 7.78325 7.83869 8.22794 8.34679 9.20751 9.80588 10.45932 11.38132 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.003232 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.632661 B = 8662.515697 C =10014.382762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.572 3.428 4 O -0.531 6.531 5 C 0.089 3.911 6 C -0.117 4.117 7 C -0.024 4.024 8 C -0.151 4.151 9 C 0.562 3.438 10 O -0.529 6.529 11 N -0.691 5.691 12 C 0.156 3.844 13 C -0.150 4.150 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.132 3.868 26 C 0.135 3.865 27 N -0.462 5.462 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.415 0.585 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.052 0.948 44 H 0.027 0.973 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 2.815 13.192 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C 0.357 3.643 4 O -0.407 6.407 5 C -0.049 4.049 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.157 4.157 9 C 0.348 3.652 10 O -0.406 6.406 11 N -0.341 5.341 12 C 0.070 3.930 13 C -0.209 4.209 14 C -0.186 4.186 15 C 0.052 3.948 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.005 3.995 26 C -0.026 4.026 27 N -0.173 5.173 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.250 0.750 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.233 0.767 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.341 3.385 12.984 18.922 hybrid contribution 0.429 -0.203 -1.155 1.248 sum -12.912 3.182 11.830 17.799 Atomic orbital electron populations 1.21617 0.79016 1.02645 1.02520 1.45636 1.07849 1.09147 1.74095 1.17928 0.85750 0.84084 0.76527 1.90788 1.68823 1.31306 1.49782 1.21214 0.94130 0.89942 0.99642 1.22102 0.94208 0.99525 0.97958 1.21800 0.93494 0.98506 0.91204 1.21371 0.95462 0.95370 1.03462 1.17867 0.86088 0.84239 0.77051 1.90736 1.66245 1.33981 1.49660 1.45742 1.07560 1.07483 1.73336 1.21555 0.78124 0.97139 0.96223 1.22010 1.00689 1.02187 0.96002 1.23249 1.00779 0.93396 1.01131 1.21171 1.01203 0.88231 0.84229 1.44450 1.86569 1.00433 1.01472 1.19099 1.42724 0.93034 0.80138 0.90551 1.24757 1.02428 0.95307 0.97996 1.69948 1.57320 0.96936 1.32968 0.86069 0.77221 0.77323 0.85345 1.20546 1.21758 1.21840 1.21878 0.97195 0.92718 0.87707 1.22970 0.88698 0.98072 0.92852 1.67493 1.10283 1.28181 1.11389 0.91968 0.91912 0.90253 0.74955 0.82783 0.82549 0.76711 0.90735 0.93059 0.91700 0.90674 0.91662 0.93598 0.93735 0.93899 0.92926 0.95503 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.70 59.84 0.64 1.23 16 2 N -0.72 -6.55 5.70 -67.89 -0.39 -6.93 16 3 C 0.57 6.89 7.82 -12.11 -0.09 6.80 16 4 O -0.53 -7.69 16.31 5.37 0.09 -7.60 16 5 C 0.09 1.07 6.75 -82.94 -0.56 0.51 16 6 C -0.12 -1.33 9.62 -39.11 -0.38 -1.71 16 7 C -0.02 -0.28 9.71 -38.89 -0.38 -0.66 16 8 C -0.15 -1.97 5.90 -104.73 -0.62 -2.59 16 9 C 0.56 8.72 7.16 -12.26 -0.09 8.63 16 10 O -0.53 -9.55 13.25 5.34 0.07 -9.48 16 11 N -0.69 -10.37 5.13 -46.50 -0.24 -10.60 16 12 C 0.16 2.58 0.82 -129.67 -0.11 2.47 16 13 C -0.15 -2.14 8.53 37.16 0.32 -1.82 16 14 C -0.15 -2.43 5.98 -24.90 -0.15 -2.58 16 15 C 0.18 3.98 5.36 -3.06 -0.02 3.96 16 16 N -0.60 -14.93 3.39 -170.07 -0.58 -15.51 16 17 C -0.22 -6.14 10.28 -15.06 -0.15 -6.29 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.34 10.31 55.49 0.57 -25.77 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.13 2.77 6.13 -2.53 -0.02 2.76 16 26 C 0.13 1.57 10.71 -17.17 -0.18 1.39 16 27 N -0.46 -5.40 9.52 -9.48 -0.09 -5.49 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.41 3.24 8.15 -40.82 -0.33 2.91 16 32 H 0.15 1.56 7.63 -52.49 -0.40 1.16 16 33 H 0.16 1.73 7.73 -52.48 -0.41 1.32 16 34 H 0.40 5.13 6.56 -40.82 -0.27 4.86 16 35 H 0.07 1.16 6.31 -51.93 -0.33 0.83 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 38 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 39 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.05 1.13 7.38 -51.93 -0.38 0.74 16 41 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.05 1.20 6.58 -51.93 -0.34 0.85 16 44 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 45 H 0.17 1.59 6.41 -52.48 -0.34 1.25 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -33.70 370.65 -7.97 -41.67 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.10 Total: 5.29 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -1.88 Total: 11.74 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.72 Total: -64.31 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.16 Total: -17.08 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.70 -7.97 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046779277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.295 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds