Wall clock time and date at job start Tue Mar 31 2020 16:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 119.99731 * 2 1 4 4 O 1.21509 * 120.00528 * 359.97438 * 3 2 1 5 5 C 1.48231 * 119.99860 * 179.97438 * 3 2 1 6 6 C 1.39624 * 119.65653 * 180.02562 * 5 3 2 7 7 C 1.38544 * 119.24757 * 179.97438 * 6 5 3 8 8 C 1.38581 * 118.55329 * 359.72864 * 7 6 5 9 9 C 1.39594 * 119.24470 * 0.53074 * 8 7 6 10 10 C 1.48221 * 119.65243 * 179.73166 * 9 8 7 11 11 O 1.21511 * 120.00331 * 359.73225 * 10 9 8 12 12 N 1.34782 * 119.99982 * 179.73051 * 10 9 8 13 13 C 1.46497 * 119.99822 * 179.97438 * 12 10 9 14 14 C 1.52993 * 110.89183 * 297.57543 * 13 12 10 15 15 C 1.55157 * 111.03555 * 173.66724 * 13 12 10 16 16 C 1.54334 * 103.02095 * 277.21854 * 15 13 12 17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 13 18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15 19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16 20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15 27 27 N 1.32347 * 119.65260 * 0.02562 * 5 3 2 28 28 H 1.09003 * 109.46722 * 60.00335 * 1 2 3 29 29 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47067 * 300.00618 * 1 2 3 31 31 H 0.96997 * 119.99880 * 179.97438 * 2 1 3 32 32 H 1.08003 * 120.37702 * 359.97438 * 6 5 3 33 33 H 1.07999 * 120.72340 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.37628 * 180.28593 * 8 7 6 35 35 H 0.96991 * 119.99925 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47666 * 182.43089 * 14 13 12 37 37 H 1.09008 * 109.47143 * 302.42655 * 14 13 12 38 38 H 1.08999 * 109.47170 * 62.42125 * 14 13 12 39 39 H 1.08998 * 110.71770 * 35.78022 * 15 13 12 40 40 H 1.09002 * 110.71853 * 158.87455 * 15 13 12 41 41 H 1.08998 * 109.99457 * 218.65928 * 16 15 13 42 42 H 1.09007 * 109.77698 * 97.49747 * 16 15 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36579 * 143.19056 * 26 17 16 45 45 H 1.08993 * 110.36917 * 265.41008 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2195 -0.0005 5 6 3.6212 1.1672 0.0006 6 6 4.3120 2.3806 0.0011 7 6 5.6974 2.3707 0.0022 8 6 6.3511 1.1488 0.0085 9 6 5.5989 -0.0271 0.0022 10 6 6.2888 -1.3390 0.0028 11 8 7.5029 -1.3870 0.0038 12 7 5.5693 -2.4787 0.0022 13 6 6.2512 -3.7753 0.0022 14 6 7.0914 -3.9499 -1.2644 15 6 5.2365 -4.9382 0.1613 16 6 5.0124 -4.9979 1.6871 17 7 6.1752 -4.3629 2.3242 18 6 6.3534 -4.1928 3.6713 19 1 7.2491 -3.7164 4.0416 20 6 5.3827 -4.6326 4.5607 21 7 4.2913 -5.2136 4.1094 22 14 5.6260 -4.4012 6.3983 23 1 6.3228 -5.5869 6.9586 24 1 6.4446 -3.1860 6.6401 25 1 4.3041 -4.2468 7.0571 26 6 7.1209 -3.9454 1.2730 27 7 4.2760 0.0171 0.0006 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8400 0.0004 32 1 3.7725 3.3162 0.0007 33 1 6.2558 3.2952 0.0022 34 1 7.4303 1.1068 0.0141 35 1 4.6002 -2.4404 0.0011 36 1 7.5531 -4.9373 -1.2610 37 1 6.4514 -3.8512 -2.1413 38 1 7.8680 -3.1857 -1.2935 39 1 4.3059 -4.7118 -0.3590 40 1 5.6621 -5.8737 -0.2019 41 1 4.9322 -6.0353 2.0118 42 1 4.1041 -4.4545 1.9480 43 1 3.6132 -5.5213 4.7310 44 1 7.5913 -2.9991 1.5401 45 1 7.8778 -4.7138 1.1167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046807449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:51 Heat of formation + Delta-G solvation = -0.322994 kcal Electronic energy + Delta-G solvation = -29059.829729 eV Core-core repulsion = 25078.392129 eV Total energy + Delta-G solvation = -3981.437600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01055 -39.81642 -38.87173 -37.19356 -34.87514 -34.04891 -33.00372 -32.13497 -31.42494 -29.90990 -28.68437 -27.39966 -25.70581 -24.97735 -24.24972 -23.55229 -21.47154 -20.69188 -20.18982 -19.09099 -18.62705 -17.69749 -16.84781 -16.29771 -16.07500 -15.71658 -15.66325 -15.25355 -14.91951 -14.62814 -14.58104 -14.05448 -13.91142 -13.59876 -13.56704 -13.22093 -12.88601 -12.79040 -12.43143 -12.32298 -12.08324 -11.93601 -11.80639 -11.67894 -10.93700 -10.89276 -10.83817 -10.43157 -10.38379 -10.26550 -10.08910 -10.02383 -9.95082 -9.65809 -9.49498 -9.41550 -9.24956 -8.66384 -8.54572 -6.79391 -5.70323 -3.01943 0.31496 0.71101 2.36113 2.91273 3.04063 3.25817 3.40701 3.46151 3.47657 3.79469 3.82693 4.50244 4.51397 4.61768 4.71356 4.75369 5.05068 5.07101 5.24669 5.28891 5.32609 5.36108 5.47416 5.59938 5.60349 5.68027 5.71719 5.81058 5.98661 6.11595 6.13419 6.16087 6.22739 6.32325 6.38050 6.51476 6.64926 6.79772 7.06319 7.13557 7.40580 7.55152 7.57047 7.80477 7.87126 7.95358 8.26864 8.44359 9.24361 9.84385 10.50100 11.41732 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.004118 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.475110 B = 6797.883474 C = 7746.593701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.713 5.713 3 C 0.575 3.425 4 O -0.536 6.536 5 C 0.075 3.925 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.090 4.090 9 C 0.091 3.909 10 C 0.573 3.427 11 O -0.530 6.530 12 N -0.677 5.677 13 C 0.153 3.847 14 C -0.149 4.149 15 C -0.146 4.146 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.131 3.869 27 N -0.432 5.432 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.415 0.585 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.251 0.749 44 H 0.055 0.945 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 10.589 -13.464 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.364 5.364 3 C 0.360 3.640 4 O -0.412 6.412 5 C -0.066 4.066 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.111 4.111 9 C -0.051 4.051 10 C 0.357 3.643 11 O -0.407 6.407 12 N -0.326 5.326 13 C 0.067 3.933 14 C -0.208 4.208 15 C -0.184 4.184 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.208 1.208 25 H -0.218 1.218 26 C 0.004 3.996 27 N -0.147 5.147 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.883 10.413 -13.250 17.097 hybrid contribution 0.193 0.426 1.166 1.256 sum -2.690 10.839 -12.083 16.454 Atomic orbital electron populations 1.21625 0.78922 1.02855 1.02370 1.45633 1.07958 1.09125 1.73673 1.17838 0.85593 0.84126 0.76489 1.90778 1.68797 1.31299 1.50352 1.21050 0.94139 0.89463 1.01925 1.22279 0.94771 0.99361 0.95219 1.21658 0.93934 0.98685 0.96980 1.22378 1.02807 0.91625 0.94285 1.21332 0.88877 0.94999 0.99861 1.17661 0.86573 0.82864 0.77220 1.90746 1.12755 1.86723 1.50471 1.45627 1.10460 1.04650 1.71886 1.21577 0.93932 0.81817 0.95994 1.21993 1.00260 1.02606 0.95897 1.23232 0.97621 0.96502 1.01091 1.21153 0.90872 0.98037 0.84650 1.44437 1.18293 1.68877 1.01283 1.19050 1.03000 1.32603 0.80283 0.90626 1.24744 0.96745 1.01064 0.97904 1.69944 1.09327 1.45425 1.32525 0.86154 0.76785 0.77770 0.85310 1.21617 1.20798 1.21751 1.21891 0.92112 0.98323 0.87242 1.67369 1.09550 1.29170 1.08594 0.92031 0.90074 0.91913 0.74907 0.83034 0.83224 0.82703 0.75833 0.91669 0.93046 0.91046 0.91704 0.90791 0.93850 0.93568 0.93897 0.92630 0.95583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.70 59.85 0.64 1.40 16 2 N -0.71 -7.90 5.70 -67.92 -0.39 -8.29 16 3 C 0.57 7.58 7.81 -12.15 -0.09 7.49 16 4 O -0.54 -8.17 16.32 5.36 0.09 -8.08 16 5 C 0.08 0.96 6.75 -83.02 -0.56 0.40 16 6 C -0.10 -1.02 9.63 -38.95 -0.38 -1.39 16 7 C -0.09 -0.81 10.16 -39.34 -0.40 -1.21 16 8 C -0.09 -1.05 9.63 -38.95 -0.38 -1.43 16 9 C 0.09 1.29 6.75 -83.03 -0.56 0.73 16 10 C 0.57 9.52 7.21 -12.16 -0.09 9.44 16 11 O -0.53 -9.81 13.12 5.36 0.07 -9.74 16 12 N -0.68 -11.06 5.17 -46.43 -0.24 -11.30 16 13 C 0.15 2.64 0.82 -129.67 -0.11 2.53 16 14 C -0.15 -2.17 8.58 37.15 0.32 -1.85 16 15 C -0.15 -2.50 5.99 -24.89 -0.15 -2.65 16 16 C 0.18 4.12 5.37 -3.06 -0.02 4.10 16 17 N -0.60 -15.26 3.39 -170.06 -0.58 -15.84 16 18 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.75 10.31 55.49 0.57 -26.18 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.13 2.82 6.10 -2.52 -0.02 2.81 16 27 N -0.43 -5.85 8.71 -6.38 -0.06 -5.90 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.42 4.30 8.16 -40.82 -0.33 3.97 16 32 H 0.15 1.41 7.64 -52.48 -0.40 1.01 16 33 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.16 1.67 7.64 -52.49 -0.40 1.27 16 35 H 0.41 6.15 7.82 -40.82 -0.32 5.83 16 36 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 37 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.07 1.12 6.53 -51.93 -0.34 0.78 16 39 H 0.06 0.95 8.05 -51.93 -0.42 0.54 16 40 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 41 H 0.04 1.12 7.52 -51.93 -0.39 0.73 16 42 H 0.05 1.17 7.37 -51.93 -0.38 0.79 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.29 6.31 -51.93 -0.33 0.96 16 45 H 0.03 0.56 8.04 -51.93 -0.42 0.15 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -33.74 372.84 -8.19 -41.94 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.23 Total: 6.78 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -2.03 Total: 13.63 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.69 Total: -67.52 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.16 Total: -17.82 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.74 -8.19 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046807449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.614 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds