Wall clock time and date at job start Tue Mar 31 2020 16:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 119.99731 * 2 1 4 4 O 1.21509 * 120.00528 * 359.97438 * 3 2 1 5 5 C 1.48231 * 119.99860 * 179.97438 * 3 2 1 6 6 C 1.39624 * 119.65653 * 180.02562 * 5 3 2 7 7 C 1.38544 * 119.24757 * 179.97438 * 6 5 3 8 8 C 1.38581 * 118.55329 * 359.72864 * 7 6 5 9 9 C 1.39594 * 119.24470 * 0.53074 * 8 7 6 10 10 C 1.48221 * 119.65243 * 179.73166 * 9 8 7 11 11 O 1.21511 * 120.00331 * 359.73225 * 10 9 8 12 12 N 1.34782 * 119.99982 * 179.73051 * 10 9 8 13 13 C 1.46497 * 119.99822 * 179.97438 * 12 10 9 14 14 C 1.52993 * 110.89183 * 297.57543 * 13 12 10 15 15 C 1.55157 * 111.03555 * 173.66724 * 13 12 10 16 16 C 1.54334 * 103.02095 * 277.21854 * 15 13 12 17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 13 18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15 19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16 20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15 27 27 N 1.32347 * 119.65260 * 0.02562 * 5 3 2 28 28 H 1.09003 * 109.46722 * 60.00335 * 1 2 3 29 29 H 1.08994 * 109.47223 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47067 * 300.00618 * 1 2 3 31 31 H 0.96997 * 119.99880 * 179.97438 * 2 1 3 32 32 H 1.08003 * 120.37702 * 359.97438 * 6 5 3 33 33 H 1.07999 * 120.72340 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.37628 * 180.28593 * 8 7 6 35 35 H 0.96991 * 119.99925 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47666 * 182.43089 * 14 13 12 37 37 H 1.09008 * 109.47143 * 302.42655 * 14 13 12 38 38 H 1.08999 * 109.47170 * 62.42125 * 14 13 12 39 39 H 1.08998 * 110.71770 * 35.78022 * 15 13 12 40 40 H 1.09002 * 110.71853 * 158.87455 * 15 13 12 41 41 H 1.08998 * 109.99457 * 218.65928 * 16 15 13 42 42 H 1.09007 * 109.77698 * 97.49747 * 16 15 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36579 * 143.19056 * 26 17 16 45 45 H 1.08993 * 110.36917 * 265.41008 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2195 -0.0005 5 6 3.6212 1.1672 0.0006 6 6 4.3120 2.3806 0.0011 7 6 5.6974 2.3707 0.0022 8 6 6.3511 1.1488 0.0085 9 6 5.5989 -0.0271 0.0022 10 6 6.2888 -1.3390 0.0028 11 8 7.5029 -1.3870 0.0038 12 7 5.5693 -2.4787 0.0022 13 6 6.2512 -3.7753 0.0022 14 6 7.0914 -3.9499 -1.2644 15 6 5.2365 -4.9382 0.1613 16 6 5.0124 -4.9979 1.6871 17 7 6.1752 -4.3629 2.3242 18 6 6.3534 -4.1928 3.6713 19 1 7.2491 -3.7164 4.0416 20 6 5.3827 -4.6326 4.5607 21 7 4.2913 -5.2136 4.1094 22 14 5.6260 -4.4012 6.3983 23 1 6.3228 -5.5869 6.9586 24 1 6.4446 -3.1860 6.6401 25 1 4.3041 -4.2468 7.0571 26 6 7.1209 -3.9454 1.2730 27 7 4.2760 0.0171 0.0006 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9500 -0.8400 0.0004 32 1 3.7725 3.3162 0.0007 33 1 6.2558 3.2952 0.0022 34 1 7.4303 1.1068 0.0141 35 1 4.6002 -2.4404 0.0011 36 1 7.5531 -4.9373 -1.2610 37 1 6.4514 -3.8512 -2.1413 38 1 7.8680 -3.1857 -1.2935 39 1 4.3059 -4.7118 -0.3590 40 1 5.6621 -5.8737 -0.2019 41 1 4.9322 -6.0353 2.0118 42 1 4.1041 -4.4545 1.9480 43 1 3.6132 -5.5213 4.7310 44 1 7.5913 -2.9991 1.5401 45 1 7.8778 -4.7138 1.1167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046807449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:50 Heat of formation + Delta-G solvation = -25.534733 kcal Electronic energy + Delta-G solvation = -29060.922992 eV Core-core repulsion = 25078.392129 eV Total energy + Delta-G solvation = -3982.530863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03277 -41.04919 -39.96907 -38.68860 -35.82777 -35.69805 -34.13829 -33.41166 -32.76555 -31.47430 -30.30732 -28.22427 -27.50910 -26.11637 -25.33730 -25.01518 -22.66094 -22.05279 -21.61114 -20.48708 -19.69425 -18.96084 -18.58886 -17.23955 -17.11199 -17.01782 -16.68705 -16.66337 -16.32903 -16.13119 -15.73417 -15.59559 -15.24282 -14.94322 -14.63724 -14.30775 -14.13661 -13.88038 -13.77976 -13.52799 -13.37524 -13.19081 -13.10992 -13.06968 -12.83718 -12.76030 -12.17874 -12.05608 -12.01743 -11.83655 -11.69519 -11.53297 -11.12171 -11.03603 -10.70800 -10.63849 -10.48593 -10.16273 -9.97590 -8.85320 -7.85733 -5.18748 -0.63008 -0.20433 1.37218 1.42549 1.43503 1.51923 1.89354 2.00408 2.11487 2.47487 2.77528 2.81109 3.32597 3.50271 3.62938 3.72947 3.80050 3.82127 3.90931 4.06088 4.19998 4.29768 4.38468 4.46016 4.60861 4.66035 4.70795 4.80657 4.88635 4.89896 4.92320 4.95368 4.96746 5.05752 5.09656 5.29257 5.36827 5.37398 5.43342 5.63625 5.68977 5.78604 6.15224 6.20814 6.42441 6.64924 7.00581 7.12248 7.18076 7.78445 8.42307 9.24042 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.004118 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.475110 B = 6797.883474 C = 7746.593701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.709 5.709 3 C 0.570 3.430 4 O -0.563 6.563 5 C 0.058 3.942 6 C -0.090 4.090 7 C -0.067 4.067 8 C -0.091 4.091 9 C 0.065 3.935 10 C 0.569 3.431 11 O -0.555 6.555 12 N -0.679 5.679 13 C 0.163 3.837 14 C -0.139 4.139 15 C -0.128 4.128 16 C 0.186 3.814 17 N -0.621 5.621 18 C -0.240 4.240 19 H 0.068 0.932 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.970 3.030 23 H -0.285 1.285 24 H -0.277 1.277 25 H -0.291 1.291 26 C 0.128 3.872 27 N -0.439 5.439 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.418 0.582 32 H 0.168 0.832 33 H 0.194 0.806 34 H 0.163 0.837 35 H 0.411 0.589 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.008 0.992 42 H 0.017 0.983 43 H 0.247 0.753 44 H 0.034 0.966 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.599 11.651 -14.667 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.359 5.359 3 C 0.355 3.645 4 O -0.441 6.441 5 C -0.083 4.083 6 C -0.111 4.111 7 C -0.093 4.093 8 C -0.111 4.111 9 C -0.076 4.076 10 C 0.355 3.645 11 O -0.434 6.434 12 N -0.328 5.328 13 C 0.076 3.924 14 C -0.197 4.197 15 C -0.166 4.166 16 C 0.061 3.939 17 N -0.347 5.347 18 C -0.369 4.369 19 H 0.086 0.914 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.798 3.202 23 H -0.211 1.211 24 H -0.202 1.202 25 H -0.218 1.218 26 C 0.002 3.998 27 N -0.154 5.154 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.254 0.746 32 H 0.186 0.814 33 H 0.211 0.789 34 H 0.180 0.820 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.027 0.973 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.811 11.456 -14.479 18.676 hybrid contribution 0.183 0.133 1.560 1.576 sum -2.627 11.589 -12.919 17.553 Atomic orbital electron populations 1.21803 0.77632 1.04543 1.02191 1.45735 1.08938 1.08745 1.72458 1.17997 0.85912 0.84267 0.76313 1.90755 1.69287 1.32104 1.52000 1.21184 0.94069 0.90117 1.02979 1.22579 0.95506 0.99209 0.93756 1.22085 0.93386 0.99323 0.94475 1.22578 1.03208 0.91691 0.93663 1.21128 0.89387 0.94592 1.02492 1.18042 0.86444 0.83708 0.76347 1.90722 1.13787 1.87270 1.51596 1.45639 1.10736 1.04481 1.71932 1.21472 0.93416 0.82353 0.95124 1.21919 0.99837 1.02980 0.95008 1.23108 0.99391 0.97561 0.96573 1.20936 0.89232 0.95141 0.88618 1.44685 1.19643 1.69126 1.01256 1.19307 1.02892 1.32491 0.82206 0.91360 1.25475 0.96685 1.01220 1.01753 1.70140 1.09751 1.46036 1.33393 0.85211 0.76561 0.77810 0.80570 1.21140 1.20200 1.21751 1.22006 0.92329 0.97001 0.88486 1.67228 1.09360 1.29857 1.08918 0.91645 0.87515 0.92611 0.74573 0.81430 0.78912 0.81984 0.75235 0.90296 0.90556 0.92262 0.88511 0.88752 0.97333 0.96493 0.94373 0.94814 0.95399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.70 127.77 1.37 2.73 16 2 N -0.71 -15.27 5.70 -487.09 -2.78 -18.04 16 3 C 0.57 14.70 7.81 86.90 0.68 15.38 16 4 O -0.56 -16.84 16.32 -3.75 -0.06 -16.90 16 5 C 0.06 1.41 6.75 42.06 0.28 1.69 16 6 C -0.09 -1.72 9.63 22.68 0.22 -1.50 16 7 C -0.07 -1.05 10.16 22.42 0.23 -0.82 16 8 C -0.09 -1.97 9.63 22.68 0.22 -1.75 16 9 C 0.06 1.80 6.75 42.05 0.28 2.08 16 10 C 0.57 18.80 7.21 86.90 0.63 19.43 16 11 O -0.56 -20.59 13.12 -3.75 -0.05 -20.64 16 12 N -0.68 -21.78 5.17 -419.11 -2.16 -23.94 16 13 C 0.16 5.44 0.82 5.00 0.00 5.44 16 14 C -0.14 -3.73 8.58 71.98 0.62 -3.11 16 15 C -0.13 -4.19 5.99 31.79 0.19 -4.00 16 16 C 0.19 8.74 5.37 86.73 0.47 9.21 16 17 N -0.62 -32.18 3.39 -691.96 -2.35 -34.53 16 18 C -0.24 -13.85 10.28 84.03 0.86 -12.99 16 19 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 21 N -0.94 -56.00 10.31 21.65 0.22 -55.78 16 22 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C 0.13 5.55 6.10 86.86 0.53 6.08 16 27 N -0.44 -11.61 8.71 -174.09 -1.52 -13.13 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.42 8.43 8.16 -92.71 -0.76 7.68 16 32 H 0.17 2.68 7.64 -2.91 -0.02 2.66 16 33 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.16 3.24 7.64 -2.91 -0.02 3.22 16 35 H 0.41 12.21 7.82 -92.71 -0.72 11.48 16 36 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.06 1.77 6.53 -2.39 -0.02 1.75 16 39 H 0.10 2.58 8.05 -2.39 -0.02 2.57 16 40 H 0.09 2.75 8.01 -2.39 -0.02 2.74 16 41 H 0.01 0.45 7.52 -2.39 -0.02 0.43 16 42 H 0.02 0.88 7.37 -2.38 -0.02 0.86 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.03 1.60 6.31 -2.39 -0.02 1.59 16 45 H 0.03 1.20 8.04 -2.39 -0.02 1.19 16 Total: -1.00 -75.72 372.84 -0.07 -75.79 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.44 Total: 23.45 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: 7.04 Total: 35.01 kcal Atomic # 7 Polarization: -136.84 SS G_CDS: -8.58 Total: -145.42 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.11 Total: -37.54 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.72 -0.07 -75.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046807449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.253 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds