Wall clock time and date at job start Tue Mar 31 2020 17:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32219 * 120.50575 * 2 1 4 4 C 1.31906 * 121.14054 * 180.28791 * 3 2 1 5 5 N 1.31751 * 122.19704 * 359.71916 * 4 3 2 6 6 C 1.32740 * 120.87130 * 0.02562 * 5 4 3 7 7 O 1.35283 * 120.61636 * 179.97438 * 6 5 4 8 8 C 1.39760 * 120.51242 * 179.75488 * 2 1 3 9 9 C 1.47537 * 120.97932 * 0.02562 * 8 2 1 10 10 O 1.21586 * 120.00270 * 269.71625 * 9 8 2 11 11 N 1.34779 * 119.99620 * 89.72446 * 9 8 2 12 12 C 1.46499 * 119.99630 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.18124 * 35.43649 * 12 11 9 14 14 C 1.53034 * 109.32499 * 154.99614 * 12 11 9 15 15 C 1.53969 * 108.93227 * 175.74277 * 14 12 11 16 16 H 1.09004 * 112.99047 * 168.93198 * 15 14 12 17 17 C 1.55424 * 106.41487 * 293.74815 * 15 14 12 18 18 C 1.55174 * 100.35219 * 73.38324 * 17 15 14 19 19 H 1.08999 * 112.48483 * 162.67010 * 18 17 15 20 20 C 1.53270 * 109.49833 * 275.80315 * 12 11 9 21 21 N 1.47786 * 104.25253 * 40.55410 * 18 17 15 22 22 C 1.36942 * 125.85607 * 153.50168 * 21 18 17 23 23 H 1.08001 * 119.99683 * 359.97438 * 22 21 18 24 24 C 1.38807 * 119.99840 * 179.97438 * 22 21 18 25 25 N 1.31619 * 120.00268 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99994 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47085 * 89.99779 * 26 24 22 28 28 H 1.48494 * 109.47453 * 209.99801 * 26 24 22 29 29 H 1.48497 * 109.47045 * 329.99869 * 26 24 22 30 30 C 1.47082 * 108.28908 * 333.52665 * 21 18 17 31 31 H 1.08998 * 109.47611 * 270.24034 * 1 2 3 32 32 H 1.08997 * 109.47403 * 30.24987 * 1 2 3 33 33 H 1.09011 * 109.46511 * 150.24326 * 1 2 3 34 34 H 1.08002 * 118.89694 * 179.70030 * 4 3 2 35 35 H 0.96701 * 114.00007 * 270.01869 * 7 6 5 36 36 H 0.96996 * 120.00406 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.58001 * 55.87259 * 14 12 11 38 38 H 1.09001 * 109.57603 * 295.61081 * 14 12 11 39 39 H 1.08998 * 111.23500 * 191.15810 * 17 15 14 40 40 H 1.08996 * 111.23691 * 315.55891 * 17 15 14 41 41 H 1.08999 * 109.49999 * 64.80161 * 20 12 11 42 42 H 1.08995 * 109.56503 * 304.64658 * 20 12 11 43 43 H 0.97003 * 120.00483 * 180.02562 * 25 24 22 44 44 H 1.08996 * 109.98231 * 241.75361 * 30 21 18 45 45 H 1.09004 * 109.97664 * 120.47059 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 -0.0057 5 7 4.2115 0.0467 -0.0061 6 6 3.6235 -1.1433 -0.0013 7 8 4.3620 -2.2767 -0.0023 8 6 2.2166 -1.2040 0.0052 9 6 1.5124 -2.5005 0.0101 10 8 1.2264 -3.0330 1.0651 11 7 1.1864 -3.0947 -1.1548 12 6 0.4866 -4.3818 -1.1499 13 1 -0.2058 -4.4097 -0.3085 14 6 -0.2963 -4.5376 -2.4555 15 6 -0.9405 -5.9356 -2.4879 16 1 -1.6673 -6.0510 -3.2921 17 6 0.2289 -6.9563 -2.5687 18 6 0.7767 -6.8679 -1.1196 19 1 1.4111 -7.7158 -0.8613 20 6 1.5057 -5.5175 -1.0054 21 7 -0.4348 -6.7919 -0.2766 22 6 -0.5316 -7.1993 1.0272 23 1 0.3283 -7.6208 1.5265 24 6 -1.7350 -7.0705 1.7070 25 7 -2.7828 -6.5564 1.0986 26 14 -1.8673 -7.6269 3.4853 27 1 -1.5238 -6.4962 4.3846 28 1 -3.2558 -8.0750 3.7618 29 1 -0.9276 -8.7518 3.7232 30 6 -1.5188 -6.2042 -1.0783 31 1 -0.3634 0.0043 1.0276 32 1 -0.3634 0.8877 -0.5177 33 1 -0.3633 -0.8923 -0.5101 34 1 4.0085 2.1051 -0.0104 35 1 4.5731 -2.6078 -0.8860 36 1 1.4143 -2.6698 -1.9965 37 1 0.3807 -4.4276 -3.3028 38 1 -1.0740 -3.7757 -2.5082 39 1 -0.1366 -7.9586 -2.7922 40 1 0.9783 -6.6414 -3.2948 41 1 1.9930 -5.4475 -0.0329 42 1 2.2536 -5.4393 -1.7944 43 1 -3.6236 -6.4661 1.5737 44 1 -1.8505 -5.2689 -0.6275 45 1 -2.3533 -6.9024 -1.1450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047128548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:13 Heat of formation + Delta-G solvation = 9.221527 kcal Electronic energy + Delta-G solvation = -29819.949240 eV Core-core repulsion = 25838.925522 eV Total energy + Delta-G solvation = -3981.023718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61642 -40.01341 -38.57997 -37.99454 -34.62378 -34.44200 -32.87487 -32.16722 -30.70913 -29.72386 -28.90489 -28.19601 -25.37097 -25.29801 -23.16099 -23.09452 -22.03560 -20.47801 -19.49618 -19.18109 -18.87863 -18.28957 -17.51277 -16.96685 -16.60821 -16.03190 -15.30874 -14.84462 -14.60789 -14.44909 -14.22088 -13.90474 -13.61020 -13.54672 -13.10091 -13.05462 -12.85285 -12.76630 -12.30047 -12.05442 -11.85230 -11.80924 -11.60384 -11.47184 -11.25346 -10.71217 -10.69261 -10.63121 -10.59157 -10.08797 -9.96870 -9.78869 -9.76125 -9.70033 -9.61519 -9.48028 -9.36329 -8.71610 -8.53920 -6.78756 -5.64567 -2.96867 0.33632 0.60272 2.58995 2.97374 3.20355 3.30137 3.47722 3.53199 3.53721 3.68179 3.96205 4.55108 4.58340 4.69072 4.89126 5.04989 5.17780 5.18548 5.33425 5.38666 5.42278 5.53807 5.61248 5.65501 5.83486 5.84944 5.94787 5.99705 6.02923 6.03510 6.08128 6.18186 6.50048 6.53396 6.57435 6.61426 6.79069 6.84038 6.95031 6.99542 7.03277 7.58897 7.62400 7.63711 7.68088 7.87365 8.30396 8.34483 9.28607 9.88834 10.53995 11.47439 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.003911 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.625032 B = 7158.261216 C = 7840.793990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.226 3.774 3 N -0.526 5.526 4 C 0.331 3.669 5 N -0.543 5.543 6 C 0.396 3.604 7 O -0.464 6.464 8 C -0.244 4.244 9 C 0.568 3.432 10 O -0.498 6.498 11 N -0.719 5.719 12 C 0.146 3.854 13 H 0.117 0.883 14 C -0.111 4.111 15 C -0.118 4.118 16 H 0.082 0.918 17 C -0.129 4.129 18 C 0.157 3.843 19 H 0.066 0.934 20 C -0.135 4.135 21 N -0.596 5.596 22 C -0.221 4.221 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.924 5.924 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.181 3.819 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.205 0.795 35 H 0.410 0.590 36 H 0.390 0.610 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.250 0.750 44 H 0.046 0.954 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 12.754 -11.532 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 N -0.243 5.243 4 C 0.043 3.957 5 N -0.269 5.269 6 C 0.208 3.792 7 O -0.272 6.272 8 C -0.253 4.253 9 C 0.350 3.650 10 O -0.370 6.370 11 N -0.369 5.369 12 C 0.044 3.956 13 H 0.135 0.865 14 C -0.150 4.150 15 C -0.138 4.138 16 H 0.101 0.899 17 C -0.167 4.167 18 C 0.049 3.951 19 H 0.084 0.916 20 C -0.176 4.176 21 N -0.320 5.320 22 C -0.349 4.349 23 H 0.094 0.906 24 C -0.201 4.201 25 N -0.572 5.572 26 Si 0.739 3.261 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.056 3.944 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.222 0.778 35 H 0.270 0.730 36 H 0.222 0.778 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.501 13.144 -9.949 19.027 hybrid contribution -0.068 -0.796 0.190 0.821 sum 9.434 12.348 -9.759 18.350 Atomic orbital electron populations 1.20944 0.86739 1.04630 1.04943 1.21857 0.97846 0.85959 0.86271 1.68297 1.10162 1.29439 1.16358 1.24945 0.86304 0.96078 0.88353 1.68040 1.42659 0.98691 1.17463 1.19394 0.85598 0.85906 0.88286 1.84727 1.72492 1.35868 1.34081 1.21926 0.95113 0.97302 1.10977 1.17521 0.79342 0.83212 0.84967 1.90958 1.51728 1.63688 1.30661 1.46242 1.60062 1.23494 1.07127 1.21326 0.94107 0.79902 1.00282 0.86533 1.21964 0.98661 0.98397 0.95929 1.22844 0.97197 0.93040 1.00732 0.89941 1.23000 0.97431 0.99014 0.97299 1.21506 0.90006 0.93812 0.89818 0.91617 1.22646 0.97274 0.97078 1.00642 1.44620 1.05553 1.72565 1.09257 1.19015 0.96136 1.33929 0.85853 0.90591 1.24711 0.95911 1.01347 0.98153 1.69932 1.01209 1.50518 1.35494 0.86174 0.76694 0.78229 0.85043 1.21607 1.21819 1.20786 1.21289 0.90322 0.98055 0.84706 0.88506 0.89033 0.89586 0.77845 0.72956 0.77755 0.92800 0.92098 0.91842 0.92264 0.92088 0.93822 0.93920 0.93577 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.85 36.01 0.35 -0.87 16 2 C 0.23 2.77 6.86 -81.86 -0.56 2.21 16 3 N -0.53 -5.98 10.36 -10.52 -0.11 -6.09 16 4 C 0.33 3.33 12.27 -92.10 -1.13 2.20 16 5 N -0.54 -6.51 10.45 -14.32 -0.15 -6.66 16 6 C 0.40 5.12 7.85 -16.18 -0.13 4.99 16 7 O -0.46 -5.63 13.10 -17.54 -0.23 -5.86 16 8 C -0.24 -3.31 5.67 -104.56 -0.59 -3.91 16 9 C 0.57 9.23 5.47 -12.47 -0.07 9.16 16 10 O -0.50 -11.04 16.77 5.29 0.09 -10.95 16 11 N -0.72 -9.86 5.08 -54.69 -0.28 -10.14 16 12 C 0.15 2.50 2.08 -67.77 -0.14 2.36 16 13 H 0.12 2.68 5.40 -51.93 -0.28 2.40 16 14 C -0.11 -1.62 4.94 -26.21 -0.13 -1.74 16 15 C -0.12 -2.00 4.33 -87.93 -0.38 -2.38 16 16 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.13 -2.09 6.18 -24.29 -0.15 -2.24 16 18 C 0.16 3.08 4.30 -65.61 -0.28 2.79 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 20 C -0.14 -2.39 5.29 -26.13 -0.14 -2.53 16 21 N -0.60 -14.58 2.43 -161.37 -0.39 -14.97 16 22 C -0.22 -6.17 10.29 -15.06 -0.16 -6.33 16 23 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 24 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 25 N -0.92 -27.09 10.35 55.49 0.57 -26.51 16 26 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 C 0.18 4.16 4.10 -2.82 -0.01 4.15 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.95 7.18 -51.92 -0.37 0.58 16 34 H 0.21 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.41 2.73 9.06 45.56 0.41 3.14 16 36 H 0.39 3.91 8.58 -40.82 -0.35 3.56 16 37 H 0.05 0.63 7.97 -51.93 -0.41 0.22 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.04 0.63 8.00 -51.93 -0.42 0.22 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.05 1.18 6.15 -51.93 -0.32 0.87 16 45 H 0.04 1.16 7.40 -51.93 -0.38 0.77 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -35.57 363.07 -9.11 -44.68 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.45 Total: 5.52 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -3.61 Total: 7.60 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.35 Total: -64.37 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.14 Total: -16.81 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.57 -9.11 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047128548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.905 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds