Wall clock time and date at job start Tue Mar 31 2020 17:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32218 * 120.50655 * 2 1 4 4 C 1.31908 * 121.14031 * 180.26172 * 3 2 1 5 5 N 1.31758 * 122.19593 * 359.47417 * 4 3 2 6 6 C 1.32750 * 120.86866 * 0.26519 * 5 4 3 7 7 O 1.35283 * 120.61276 * 180.02562 * 6 5 4 8 8 C 1.39758 * 120.51111 * 179.75057 * 2 1 3 9 9 C 1.47535 * 120.98000 * 359.97438 * 8 2 1 10 10 O 1.21592 * 119.99908 * 270.02314 * 9 8 2 11 11 N 1.34776 * 120.00164 * 90.01669 * 9 8 2 12 12 C 1.45734 * 117.75926 * 0.02562 * 11 9 8 13 13 C 1.53054 * 109.55635 * 141.07810 * 12 11 9 14 14 C 1.52946 * 108.49264 * 53.80232 * 13 12 11 15 15 C 1.52920 * 109.78969 * 294.00365 * 14 13 12 16 16 H 1.09000 * 110.51799 * 292.89986 * 15 14 13 17 17 C 1.44189 * 117.76447 * 179.73411 * 11 9 8 18 18 H 1.08998 * 109.22788 * 333.42162 * 17 11 9 19 19 C 1.54571 * 111.47619 * 93.66391 * 17 11 9 20 20 C 1.54053 * 103.66993 * 153.28696 * 19 17 11 21 21 N 1.46881 * 107.70907 * 342.84944 * 20 19 17 22 22 C 1.36947 * 125.58283 * 177.04600 * 21 20 19 23 23 H 1.07998 * 119.99795 * 179.97438 * 22 21 20 24 24 C 1.38811 * 119.99740 * 359.97438 * 22 21 20 25 25 N 1.31616 * 120.00000 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99642 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47430 * 0.02562 * 26 24 22 28 28 H 1.48509 * 109.46942 * 120.00118 * 26 24 22 29 29 H 1.48496 * 109.47513 * 239.99948 * 26 24 22 30 30 H 1.09005 * 109.46703 * 270.24828 * 1 2 3 31 31 H 1.09000 * 109.47248 * 30.24643 * 1 2 3 32 32 H 1.08990 * 109.47327 * 150.24718 * 1 2 3 33 33 H 1.08002 * 118.90626 * 179.76119 * 4 3 2 34 34 H 0.96697 * 114.00072 * 89.99784 * 7 6 5 35 35 H 1.08998 * 109.45339 * 261.10383 * 12 11 9 36 36 H 1.08997 * 109.45848 * 21.05410 * 12 11 9 37 37 H 1.08998 * 109.63189 * 173.50216 * 13 12 11 38 38 H 1.08996 * 109.63640 * 293.89575 * 13 12 11 39 39 H 1.08993 * 109.42070 * 54.10686 * 14 13 12 40 40 H 1.09007 * 109.41067 * 173.90796 * 14 13 12 41 41 H 1.09005 * 110.62107 * 34.74312 * 19 17 11 42 42 H 1.08996 * 110.71627 * 271.88678 * 19 17 11 43 43 H 1.08999 * 109.81218 * 223.29884 * 20 19 17 44 44 H 1.08999 * 109.80966 * 102.40266 * 20 19 17 45 45 H 0.97006 * 119.99817 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 -0.0052 5 7 4.2116 0.0466 -0.0003 6 6 3.6234 -1.1434 0.0048 7 8 4.3619 -2.2769 0.0103 8 6 2.2166 -1.2041 0.0052 9 6 1.5124 -2.5005 0.0115 10 8 1.2223 -3.0297 1.0670 11 7 1.1906 -3.0982 -1.1529 12 6 1.5620 -2.4211 -2.3888 13 6 2.0354 -3.4526 -3.4157 14 6 0.9507 -4.5203 -3.5663 15 6 0.8111 -5.3042 -2.2607 16 1 1.7086 -5.8927 -2.0705 17 6 0.5081 -4.3668 -1.0905 18 1 0.7628 -4.8658 -0.1555 19 6 -1.0257 -4.1881 -1.1576 20 6 -1.5211 -5.5170 -1.7593 21 7 -0.3688 -6.1832 -2.3804 22 6 -0.3864 -7.4174 -2.9737 23 1 0.5173 -7.8224 -3.4043 24 6 -1.5659 -8.1477 -3.0214 25 7 -2.6674 -7.6538 -2.4970 26 14 -1.5901 -9.8308 -3.8313 27 1 -0.2332 -10.1549 -4.3402 28 1 -2.0023 -10.8531 -2.8360 29 1 -2.5540 -9.8229 -4.9609 30 1 -0.3633 0.0045 1.0277 31 1 -0.3634 0.8878 -0.5177 32 1 -0.3633 -0.8921 -0.5099 33 1 4.0088 2.1049 -0.0089 34 1 4.5763 -2.6024 0.8953 35 1 0.6982 -1.8860 -2.7833 36 1 2.3664 -1.7136 -2.1876 37 1 2.2036 -2.9636 -4.3752 38 1 2.9616 -3.9131 -3.0721 39 1 0.0012 -4.0413 -3.8047 40 1 1.2234 -5.2028 -4.3713 41 1 -1.2869 -3.3527 -1.8072 42 1 -1.4407 -4.0408 -0.1605 43 1 -2.2839 -5.3198 -2.5125 44 1 -1.9327 -6.1483 -0.9719 45 1 -3.4916 -8.1643 -2.5300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049657717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:53 Heat of formation + Delta-G solvation = 11.159001 kcal Electronic energy + Delta-G solvation = -30034.881583 eV Core-core repulsion = 26053.941880 eV Total energy + Delta-G solvation = -3980.939703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83414 -40.22462 -38.13086 -37.90006 -35.48520 -34.49669 -32.70272 -32.58554 -31.88033 -29.33728 -28.80690 -28.36499 -25.80803 -24.44027 -24.24505 -23.15754 -22.05812 -20.98214 -20.07898 -19.22970 -18.44795 -18.25906 -17.60916 -16.94080 -16.56328 -16.14770 -15.40093 -14.88695 -14.78590 -14.46922 -14.30824 -14.21431 -13.90428 -13.67133 -13.47579 -13.18334 -13.05881 -12.90889 -12.55581 -12.36872 -12.13292 -12.03205 -11.55967 -11.43970 -11.13317 -10.98868 -10.81542 -10.70471 -10.69712 -10.57131 -10.24094 -10.08332 -9.89838 -9.71770 -9.69055 -9.65323 -9.55056 -8.63546 -8.44683 -6.89933 -5.74424 -3.09207 0.25899 0.53392 2.35750 2.89391 2.94198 3.30865 3.38094 3.43921 3.46120 3.60967 3.88621 4.17586 4.45477 4.59390 4.76403 4.86076 4.95656 5.06343 5.21884 5.24908 5.32169 5.36318 5.41003 5.49137 5.55981 5.58365 5.64638 5.81894 5.87286 5.95650 6.03927 6.16167 6.26885 6.31429 6.43490 6.49733 6.53556 6.69185 6.88727 6.97044 7.01127 7.35358 7.53941 7.59700 7.61831 7.80154 8.07344 8.22149 9.17866 9.77500 10.41813 11.36473 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.003295 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.126553 B = 8495.983952 C = 8851.167779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.226 3.774 3 N -0.525 5.525 4 C 0.331 3.669 5 N -0.542 5.542 6 C 0.396 3.604 7 O -0.468 6.468 8 C -0.240 4.240 9 C 0.567 3.433 10 O -0.527 6.527 11 N -0.570 5.570 12 C 0.112 3.888 13 C -0.130 4.130 14 C -0.130 4.130 15 C 0.163 3.837 16 H 0.056 0.944 17 C 0.135 3.865 18 H 0.094 0.906 19 C -0.151 4.151 20 C 0.179 3.821 21 N -0.595 5.595 22 C -0.227 4.227 23 H 0.079 0.921 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.912 3.088 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.206 0.794 34 H 0.415 0.585 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 17.742 3.563 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 N -0.241 5.241 4 C 0.044 3.956 5 N -0.267 5.267 6 C 0.208 3.792 7 O -0.276 6.276 8 C -0.249 4.249 9 C 0.352 3.648 10 O -0.403 6.403 11 N -0.300 5.300 12 C -0.010 4.010 13 C -0.169 4.169 14 C -0.171 4.171 15 C 0.054 3.946 16 H 0.074 0.926 17 C 0.031 3.969 18 H 0.112 0.888 19 C -0.190 4.190 20 C 0.054 3.946 21 N -0.320 5.320 22 C -0.355 4.355 23 H 0.097 0.903 24 C -0.202 4.202 25 N -0.567 5.567 26 Si 0.743 3.257 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.222 0.778 34 H 0.276 0.724 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.275 18.029 3.458 21.038 hybrid contribution -0.241 -1.651 -0.073 1.670 sum 10.034 16.379 3.384 19.504 Atomic orbital electron populations 1.20943 0.86804 1.04795 1.04719 1.21827 0.97831 0.85905 0.86464 1.68305 1.10167 1.29355 1.16246 1.24965 0.86278 0.96105 0.88301 1.68070 1.42622 0.98637 1.17333 1.19382 0.85497 0.85980 0.88323 1.84636 1.72436 1.35917 1.34642 1.21816 0.95138 0.97151 1.10825 1.17718 0.78929 0.83599 0.84567 1.90829 1.54259 1.64566 1.30664 1.47036 1.56293 1.21260 1.05376 1.21462 0.99486 0.95094 0.85003 1.21823 0.99973 0.97153 0.97920 1.22133 0.97510 0.96953 1.00467 1.20811 0.92244 0.90397 0.91152 0.92627 1.21232 0.92375 0.82243 1.01020 0.88753 1.23107 0.94415 1.00709 1.00784 1.21063 0.89424 0.87747 0.96364 1.44508 1.03598 1.16560 1.67284 1.19061 0.95499 0.91243 1.29744 0.90321 1.24800 0.95674 0.98803 1.00971 1.69977 0.99672 1.37423 1.49597 0.86045 0.77355 0.83774 0.78569 1.20499 1.21742 1.21778 0.88610 0.88902 0.89669 0.77783 0.72386 0.91691 0.91416 0.91089 0.91418 0.91900 0.91660 0.92538 0.91778 0.94077 0.92872 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.85 36.01 0.35 -0.75 16 2 C 0.23 2.53 6.86 -81.86 -0.56 1.97 16 3 N -0.52 -5.47 10.36 -10.52 -0.11 -5.58 16 4 C 0.33 3.04 12.27 -92.09 -1.13 1.91 16 5 N -0.54 -5.99 10.45 -14.31 -0.15 -6.14 16 6 C 0.40 4.72 7.36 -16.18 -0.12 4.60 16 7 O -0.47 -5.19 13.10 -17.54 -0.23 -5.42 16 8 C -0.24 -3.02 3.65 -104.57 -0.38 -3.40 16 9 C 0.57 8.53 5.29 -12.47 -0.07 8.46 16 10 O -0.53 -9.55 16.38 5.28 0.09 -9.47 16 11 N -0.57 -8.55 2.79 -168.65 -0.47 -9.02 16 12 C 0.11 1.44 6.11 -4.43 -0.03 1.41 16 13 C -0.13 -1.73 6.10 -26.73 -0.16 -1.90 16 14 C -0.13 -2.23 5.31 -26.80 -0.14 -2.37 16 15 C 0.16 3.22 3.27 -67.38 -0.22 3.00 16 16 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.14 2.45 2.76 -68.35 -0.19 2.26 16 18 H 0.09 1.90 7.08 -51.93 -0.37 1.53 16 19 C -0.15 -2.84 6.46 -25.36 -0.16 -3.00 16 20 C 0.18 4.24 5.39 -3.28 -0.02 4.23 16 21 N -0.60 -14.54 2.93 -163.94 -0.48 -15.02 16 22 C -0.23 -6.12 10.27 -15.06 -0.15 -6.27 16 23 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -26.45 10.29 55.49 0.57 -25.88 16 26 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.90 7.18 -51.93 -0.37 0.52 16 33 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.41 2.87 9.06 45.56 0.41 3.28 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 44 H 0.05 1.42 7.25 -51.93 -0.38 1.04 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -32.66 363.19 -9.01 -41.67 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.60 Total: 2.75 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -3.08 Total: 9.88 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.64 Total: -61.64 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.14 Total: -14.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.66 -9.01 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049657717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.828 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds