Wall clock time and date at job start Tue Mar 31 2020 17:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32217 * 120.50319 * 2 1 4 4 C 1.31912 * 121.13945 * 179.97438 * 3 2 1 5 5 N 1.31756 * 122.19275 * 359.97438 * 4 3 2 6 6 C 1.32745 * 120.87301 * 0.02562 * 5 4 3 7 7 O 1.35280 * 120.61284 * 179.97438 * 6 5 4 8 8 C 1.39760 * 120.51175 * 179.71833 * 2 1 3 9 9 C 1.47542 * 120.97946 * 0.02562 * 8 2 1 10 10 O 1.21585 * 120.00000 * 89.99972 * 9 8 2 11 11 N 1.34771 * 119.99653 * 269.99870 * 9 8 2 12 12 C 1.46801 * 119.57994 * 359.97438 * 11 9 8 13 13 C 1.53465 * 107.59466 * 232.05594 * 12 11 9 14 14 C 1.52735 * 108.44296 * 301.92155 * 13 12 11 15 15 C 1.53017 * 110.80227 * 63.76596 * 14 13 12 16 16 H 1.08995 * 111.38290 * 68.76830 * 15 14 13 17 17 C 1.45124 * 119.57473 * 179.72948 * 11 9 8 18 18 H 1.09001 * 109.97176 * 11.92787 * 17 11 9 19 19 C 1.54425 * 111.60687 * 248.64235 * 17 11 9 20 20 C 1.54561 * 102.44675 * 203.41662 * 19 17 11 21 21 N 1.48207 * 107.11172 * 191.93163 * 15 14 13 22 22 C 1.36944 * 125.76917 * 270.85793 * 21 15 14 23 23 H 1.07996 * 119.99499 * 0.02562 * 22 21 15 24 24 C 1.38815 * 120.00246 * 180.02562 * 22 21 15 25 25 N 1.31622 * 119.99682 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99812 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47122 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46650 * 120.00225 * 26 24 22 29 29 H 1.48505 * 109.46871 * 240.00019 * 26 24 22 30 30 H 1.08999 * 109.47015 * 90.00320 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99473 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00190 * 1 2 3 33 33 H 1.07998 * 118.90360 * 180.02562 * 4 3 2 34 34 H 0.96704 * 113.99962 * 90.00087 * 7 6 5 35 35 H 1.09000 * 109.83177 * 351.58186 * 12 11 9 36 36 H 1.09005 * 109.83083 * 112.47250 * 12 11 9 37 37 H 1.09003 * 109.63793 * 61.60326 * 13 12 11 38 38 H 1.09003 * 109.64325 * 182.02145 * 13 12 11 39 39 H 1.08997 * 109.20892 * 184.10925 * 14 13 12 40 40 H 1.09001 * 109.20915 * 303.46831 * 14 13 12 41 41 H 1.09000 * 110.81197 * 321.65791 * 19 17 11 42 42 H 1.09002 * 110.80819 * 84.98025 * 19 17 11 43 43 H 1.09002 * 109.88441 * 141.08662 * 20 19 17 44 44 H 1.08998 * 109.88839 * 262.25982 * 20 19 17 45 45 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 0.0005 5 7 4.2115 0.0467 0.0015 6 6 3.6234 -1.1434 0.0016 7 8 4.3619 -2.2768 0.0021 8 6 2.2166 -1.2041 0.0059 9 6 1.5124 -2.5006 0.0117 10 8 1.2227 -3.0397 -1.0388 11 7 1.1904 -3.0872 1.1816 12 6 1.5453 -2.4283 2.4445 13 6 2.3004 -3.4504 3.3048 14 6 1.3995 -4.6661 3.5131 15 6 1.1073 -5.3605 2.1812 16 1 2.0004 -5.8372 1.7772 17 6 0.4925 -4.3596 1.1766 18 1 0.5010 -4.7849 0.1730 19 6 -0.9542 -4.2167 1.6972 20 6 -1.2783 -5.6494 2.1781 21 7 0.0138 -6.3305 2.4258 22 6 0.1720 -7.6330 2.8179 23 1 1.1627 -8.0329 2.9756 24 6 -0.9411 -8.4393 3.0127 25 7 -2.1485 -7.9520 2.8201 26 14 -0.7252 -10.2159 3.5482 27 1 0.7216 -10.5161 3.6956 28 1 -1.4092 -10.4271 4.8493 29 1 -1.3166 -11.1163 2.5261 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 4.0087 2.1050 0.0009 34 1 4.5763 -2.6061 0.8857 35 1 2.1844 -1.5679 2.2459 36 1 0.6407 -2.1058 2.9602 37 1 3.2143 -3.7548 2.7946 38 1 2.5494 -3.0057 4.2683 39 1 1.8948 -5.3689 4.1830 40 1 0.4602 -4.3437 3.9624 41 1 -0.9995 -3.5103 2.5262 42 1 -1.6264 -3.9130 0.8946 43 1 -1.8593 -5.6087 3.0995 44 1 -1.8371 -6.1815 1.4083 45 1 -2.9262 -8.5156 2.9559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049657723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:56 Heat of formation + Delta-G solvation = 12.805306 kcal Electronic energy + Delta-G solvation = -30060.613576 eV Core-core repulsion = 26079.745262 eV Total energy + Delta-G solvation = -3980.868314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81296 -40.17100 -38.12728 -37.95434 -35.37552 -34.49073 -32.64861 -32.48962 -31.88671 -29.32271 -28.85796 -28.28266 -25.86075 -24.37427 -24.31438 -23.15388 -22.16199 -20.92034 -20.09581 -19.24880 -18.54320 -18.23459 -17.59493 -16.95603 -16.68978 -16.06197 -15.39987 -14.82890 -14.75486 -14.56272 -14.37187 -14.17012 -13.92646 -13.68946 -13.49071 -13.17390 -13.07679 -12.90899 -12.59300 -12.37819 -12.18693 -12.02655 -11.56958 -11.44981 -11.14363 -11.11432 -10.86126 -10.73181 -10.69566 -10.65044 -10.27595 -10.09622 -9.89505 -9.77086 -9.72596 -9.68807 -9.54821 -8.69681 -8.45789 -6.92803 -5.76495 -3.10624 0.26667 0.53561 2.37735 2.84589 2.97008 3.23459 3.37107 3.42986 3.45160 3.60573 3.88728 4.17809 4.43501 4.59340 4.71535 4.78904 4.92737 4.98298 5.12195 5.22407 5.23593 5.34307 5.37172 5.45638 5.52541 5.56649 5.57090 5.74793 5.82618 5.86797 5.95878 6.08918 6.18133 6.24203 6.39798 6.41919 6.49898 6.60551 6.83254 6.94563 6.98045 7.36150 7.48627 7.53632 7.62032 7.76215 8.06949 8.16688 9.13515 9.74167 10.39468 11.35120 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024157 B = 0.003320 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.803002 B = 8431.684955 C = 8818.865273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.225 3.775 3 N -0.525 5.525 4 C 0.331 3.669 5 N -0.541 5.541 6 C 0.396 3.604 7 O -0.465 6.465 8 C -0.239 4.239 9 C 0.571 3.429 10 O -0.519 6.519 11 N -0.583 5.583 12 C 0.107 3.893 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.158 3.842 16 H 0.061 0.939 17 C 0.129 3.871 18 H 0.104 0.896 19 C -0.152 4.152 20 C 0.180 3.820 21 N -0.598 5.598 22 C -0.227 4.227 23 H 0.079 0.921 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.206 0.794 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.427 18.662 -0.391 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 N -0.241 5.241 4 C 0.043 3.957 5 N -0.266 5.266 6 C 0.208 3.792 7 O -0.273 6.273 8 C -0.249 4.249 9 C 0.356 3.644 10 O -0.395 6.395 11 N -0.314 5.314 12 C -0.016 4.016 13 C -0.171 4.171 14 C -0.170 4.170 15 C 0.049 3.951 16 H 0.079 0.921 17 C 0.026 3.974 18 H 0.122 0.878 19 C -0.191 4.191 20 C 0.056 3.944 21 N -0.323 5.323 22 C -0.355 4.355 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.222 0.778 34 H 0.272 0.728 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.551 18.935 -1.486 20.829 hybrid contribution -0.105 -1.750 0.835 1.942 sum 8.446 17.185 -0.651 19.159 Atomic orbital electron populations 1.20937 0.86823 1.04724 1.04726 1.21824 0.97821 0.85911 0.86533 1.68306 1.10181 1.29317 1.16280 1.24965 0.86271 0.96105 0.88314 1.68062 1.42620 0.98637 1.17302 1.19373 0.85543 0.85954 0.88319 1.84706 1.72436 1.35886 1.34254 1.21781 0.95205 0.97075 1.10797 1.17644 0.78983 0.83483 0.84320 1.90837 1.53677 1.63790 1.31160 1.47641 1.56824 1.21939 1.05016 1.21823 0.99830 0.95020 0.84883 1.21941 0.98953 0.97001 0.99212 1.22141 0.99062 0.95500 1.00327 1.21389 0.92473 0.89465 0.91795 0.92100 1.21986 0.91943 0.81703 1.01809 0.87762 1.23117 0.95155 1.00856 0.99955 1.21352 0.87857 0.85725 0.99506 1.44939 0.99703 1.07855 1.79788 1.19072 0.92974 0.84922 1.38522 0.90354 1.24792 0.95282 0.98372 1.01832 1.69951 0.96872 1.34949 1.54988 0.86054 0.77299 0.84601 0.77843 1.20519 1.21799 1.21734 0.88633 0.89687 0.88922 0.77772 0.72824 0.91441 0.90649 0.91966 0.91105 0.91897 0.91685 0.92194 0.91850 0.93863 0.92806 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.86 36.01 0.36 -0.71 16 2 C 0.23 2.51 6.86 -81.85 -0.56 1.95 16 3 N -0.52 -5.45 10.36 -10.52 -0.11 -5.56 16 4 C 0.33 3.05 12.27 -92.09 -1.13 1.92 16 5 N -0.54 -6.07 10.45 -14.32 -0.15 -6.22 16 6 C 0.40 4.83 7.66 -16.19 -0.12 4.70 16 7 O -0.46 -5.42 13.10 -17.53 -0.23 -5.65 16 8 C -0.24 -3.03 3.60 -104.56 -0.38 -3.40 16 9 C 0.57 8.60 5.35 -12.47 -0.07 8.54 16 10 O -0.52 -9.99 16.43 5.29 0.09 -9.91 16 11 N -0.58 -8.13 2.73 -166.01 -0.45 -8.58 16 12 C 0.11 1.17 6.05 -3.64 -0.02 1.14 16 13 C -0.13 -1.48 6.11 -26.63 -0.16 -1.64 16 14 C -0.13 -2.05 5.10 -26.86 -0.14 -2.19 16 15 C 0.16 2.97 3.61 -66.16 -0.24 2.74 16 16 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 17 C 0.13 2.25 3.11 -67.10 -0.21 2.04 16 18 H 0.10 2.10 6.95 -51.93 -0.36 1.74 16 19 C -0.15 -2.68 6.08 -25.16 -0.15 -2.83 16 20 C 0.18 4.13 5.22 -2.32 -0.01 4.12 16 21 N -0.60 -14.25 2.94 -161.16 -0.47 -14.72 16 22 C -0.23 -6.02 10.30 -15.05 -0.16 -6.18 16 23 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 24 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 25 N -0.92 -26.20 10.35 55.49 0.57 -25.62 16 26 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.85 7.17 -51.93 -0.37 0.47 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.21 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.41 2.85 9.06 45.56 0.41 3.26 16 35 H 0.07 0.63 6.11 -51.93 -0.32 0.31 16 36 H 0.08 0.79 7.51 -51.93 -0.39 0.40 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.11 7.11 -51.93 -0.37 0.74 16 41 H 0.06 0.96 6.78 -51.93 -0.35 0.60 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 1.09 7.62 -51.93 -0.40 0.69 16 44 H 0.05 1.40 7.31 -51.93 -0.38 1.02 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -33.22 360.70 -8.88 -42.11 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.45 Total: 2.18 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -3.09 Total: 9.92 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.61 Total: -60.70 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.14 Total: -15.55 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.22 -8.88 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049657723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.912 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds