Wall clock time and date at job start Tue Mar 31 2020 17:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32219 * 120.50869 * 2 1 4 4 C 1.31907 * 121.14194 * 179.97438 * 3 2 1 5 5 N 1.31762 * 122.19552 * 359.97438 * 4 3 2 6 6 C 1.32742 * 120.86700 * 359.76920 * 5 4 3 7 7 O 1.35281 * 120.61078 * 180.24000 * 6 5 4 8 8 C 1.39755 * 120.51103 * 179.97438 * 2 1 3 9 9 C 1.47544 * 120.97904 * 0.02562 * 8 2 1 10 10 O 1.21588 * 120.00251 * 90.00216 * 9 8 2 11 11 N 1.34772 * 119.99622 * 269.99948 * 9 8 2 12 12 C 1.47671 * 134.45347 * 179.97438 * 11 9 8 13 13 C 1.53516 * 85.97810 * 204.29304 * 12 11 9 14 14 C 1.47671 * 134.46051 * 359.97308 * 11 9 8 15 15 C 1.52678 * 113.57151 * 91.01291 * 13 12 11 16 16 C 1.53341 * 109.10821 * 73.81618 * 15 13 12 17 17 N 1.46878 * 108.76222 * 52.40663 * 16 15 13 18 18 C 1.36942 * 120.46612 * 124.47515 * 17 16 15 19 19 H 1.07995 * 119.99541 * 331.55754 * 18 17 16 20 20 C 1.38808 * 119.99991 * 151.83908 * 18 17 16 21 21 N 1.31615 * 120.00070 * 342.22560 * 20 18 17 22 22 Si 1.86804 * 119.99766 * 162.22409 * 20 18 17 23 23 H 1.48496 * 109.46872 * 90.00294 * 22 20 18 24 24 H 1.48500 * 109.46904 * 210.00085 * 22 20 18 25 25 H 1.48496 * 109.47110 * 329.99821 * 22 20 18 26 26 C 1.46886 * 119.06696 * 304.73887 * 17 16 15 27 27 C 1.52669 * 113.56488 * 222.23108 * 13 12 11 28 28 H 1.09000 * 109.47391 * 270.02522 * 1 2 3 29 29 H 1.09004 * 109.47081 * 30.01660 * 1 2 3 30 30 H 1.08998 * 109.47158 * 150.01462 * 1 2 3 31 31 H 1.08004 * 118.90362 * 180.02562 * 4 3 2 32 32 H 0.96698 * 114.00216 * 270.23873 * 7 6 5 33 33 H 1.09000 * 113.79635 * 90.03199 * 12 11 9 34 34 H 1.09001 * 113.79504 * 318.55683 * 12 11 9 35 35 H 1.08995 * 113.78886 * 41.42966 * 14 11 9 36 36 H 1.09006 * 113.78660 * 269.96578 * 14 11 9 37 37 H 1.08994 * 109.53131 * 313.92958 * 15 13 12 38 38 H 1.08996 * 109.52755 * 193.70553 * 15 13 12 39 39 H 1.09003 * 109.58965 * 292.62160 * 16 15 13 40 40 H 1.09003 * 109.58355 * 172.18623 * 16 15 13 41 41 H 0.97006 * 119.99997 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.58454 * 175.04273 * 26 17 16 43 43 H 1.08997 * 109.59165 * 295.47702 * 26 17 16 44 44 H 1.09002 * 109.53084 * 46.08145 * 27 13 12 45 45 H 1.09001 * 109.52971 * 166.29620 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6233 -1.1434 0.0067 7 8 4.3618 -2.2769 0.0126 8 6 2.2165 -1.2040 0.0005 9 6 1.5123 -2.5006 0.0006 10 8 1.2225 -3.0351 -1.0524 11 7 1.1903 -3.0924 1.1678 12 6 0.5072 -4.3486 1.5364 13 6 0.1697 -3.6498 2.8610 14 6 1.3790 -2.7446 2.5905 15 6 -1.1653 -2.9094 2.8378 16 6 -2.3072 -3.9315 2.8898 17 7 -2.0854 -4.8300 4.0303 18 6 -3.0509 -4.9868 4.9887 19 1 -3.7414 -4.1828 5.1961 20 6 -3.1383 -6.1770 5.6976 21 7 -2.5532 -7.2621 5.2366 22 14 -4.0864 -6.2386 7.3060 23 1 -5.5038 -6.5864 7.0320 24 1 -3.4873 -7.2666 8.1946 25 1 -4.0215 -4.9120 7.9700 26 6 -0.8111 -5.5536 4.1315 27 6 0.3382 -4.5470 4.0847 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 4.0088 2.1049 0.0009 32 1 4.5803 -2.6086 -0.8690 33 1 1.1800 -5.1990 1.6470 34 1 -0.3652 -4.5715 0.9222 35 1 1.1996 -1.6929 2.8135 36 1 2.3113 -3.1180 3.0144 37 1 -1.2416 -2.3241 1.9215 38 1 -1.2296 -2.2469 3.7010 39 1 -2.3221 -4.5101 1.9662 40 1 -3.2574 -3.4118 3.0134 41 1 -2.6139 -8.0938 5.7322 42 1 -0.7762 -6.1022 5.0727 43 1 -0.7184 -6.2488 3.2971 44 1 1.2876 -5.0785 4.0189 45 1 0.3225 -3.9376 4.9883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050628953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:37 Heat of formation + Delta-G solvation = 35.818841 kcal Electronic energy + Delta-G solvation = -29340.018173 eV Core-core repulsion = 25360.147802 eV Total energy + Delta-G solvation = -3979.870372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75910 -40.55783 -38.39108 -38.06047 -35.91524 -34.54569 -32.67878 -32.19171 -30.66987 -29.89178 -29.01385 -27.25827 -26.45886 -25.03639 -24.06744 -23.18687 -22.42918 -21.05826 -19.82319 -19.28804 -18.43128 -18.09161 -17.46377 -16.69254 -16.44943 -16.23296 -15.57519 -15.30229 -14.88704 -14.59818 -14.03832 -13.85223 -13.76961 -13.67966 -13.53592 -13.23329 -13.15774 -12.90823 -12.75218 -12.41870 -12.32571 -11.97700 -11.79298 -11.57965 -11.47127 -11.10527 -10.75385 -10.72896 -10.56381 -10.40543 -10.23620 -10.08043 -9.91993 -9.80304 -9.74735 -9.68385 -9.42585 -8.70412 -8.49427 -6.70708 -5.83305 -3.25814 0.22067 0.50186 2.29847 2.71283 2.85828 3.24768 3.34701 3.42409 3.44244 3.58007 3.85230 4.07033 4.46001 4.51955 4.55885 4.72900 4.91227 5.01144 5.10502 5.21750 5.31994 5.33875 5.39716 5.44512 5.50356 5.55260 5.57843 5.71552 5.81940 5.85043 5.99672 6.01485 6.20270 6.37941 6.42042 6.50936 6.53418 6.60151 6.74877 6.89129 6.90172 7.27600 7.58241 7.59175 7.61278 7.76038 7.94470 8.41525 9.17291 9.80738 10.36596 11.24987 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002883 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.854359 B = 9711.236433 C =10024.461495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.228 3.772 3 N -0.525 5.525 4 C 0.333 3.667 5 N -0.542 5.542 6 C 0.397 3.603 7 O -0.469 6.469 8 C -0.240 4.240 9 C 0.596 3.404 10 O -0.536 6.536 11 N -0.624 5.624 12 C 0.120 3.880 13 C -0.073 4.073 14 C 0.103 3.897 15 C -0.109 4.109 16 C 0.147 3.853 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.171 3.829 27 C -0.127 4.127 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.206 0.794 32 H 0.414 0.586 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.054 0.946 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.735 13.743 -9.247 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.083 3.917 3 N -0.241 5.241 4 C 0.046 3.954 5 N -0.268 5.268 6 C 0.209 3.791 7 O -0.278 6.278 8 C -0.249 4.249 9 C 0.383 3.617 10 O -0.414 6.414 11 N -0.357 5.357 12 C -0.001 4.001 13 C -0.074 4.074 14 C -0.020 4.020 15 C -0.148 4.148 16 C 0.020 3.980 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.045 3.955 27 C -0.167 4.167 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.223 0.777 32 H 0.275 0.725 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.059 14.185 -9.335 20.828 hybrid contribution -0.399 -0.933 0.370 1.080 sum 11.660 13.252 -8.965 19.798 Atomic orbital electron populations 1.20962 0.86736 1.04982 1.04671 1.21851 0.97881 0.85910 0.86106 1.68315 1.10162 1.29369 1.16254 1.24983 0.86289 0.96101 0.88069 1.68064 1.42619 0.98655 1.17414 1.19369 0.85470 0.85967 0.88258 1.84631 1.72480 1.35977 1.34690 1.21783 0.94996 0.96928 1.11237 1.17129 0.78205 0.83415 0.82971 1.90832 1.54840 1.65355 1.30349 1.50070 1.57011 1.23720 1.04933 1.23373 0.96036 0.86753 0.93911 1.21985 0.94476 0.95561 0.95330 1.23521 0.99500 1.00607 0.78350 1.21795 0.94116 0.98390 1.00492 1.20880 0.94951 0.91273 0.90851 1.43998 1.13729 1.50496 1.23037 1.19154 1.10577 0.96892 1.11744 0.91780 1.25026 0.99533 0.94799 1.00138 1.70029 1.47493 0.99163 1.37813 0.86340 0.79520 0.77315 0.83848 1.21409 1.21569 1.20491 1.20681 0.82031 0.90854 1.01950 1.22068 1.00387 0.98741 0.95500 0.88547 0.88891 0.89529 0.77718 0.72502 0.89459 0.89571 0.90745 0.89518 0.92991 0.91640 0.96328 0.92564 0.93606 0.89193 0.96335 0.92715 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.85 36.01 0.35 -0.77 16 2 C 0.23 2.60 6.86 -81.86 -0.56 2.04 16 3 N -0.52 -5.60 10.36 -10.52 -0.11 -5.71 16 4 C 0.33 3.12 12.27 -92.09 -1.13 1.99 16 5 N -0.54 -6.06 10.45 -14.32 -0.15 -6.21 16 6 C 0.40 4.73 7.85 -16.19 -0.13 4.61 16 7 O -0.47 -5.06 13.10 -17.53 -0.23 -5.29 16 8 C -0.24 -3.02 5.41 -104.56 -0.57 -3.59 16 9 C 0.60 8.65 5.74 -12.47 -0.07 8.57 16 10 O -0.54 -9.41 17.83 5.29 0.09 -9.31 16 11 N -0.62 -8.61 3.44 -181.43 -0.62 -9.23 16 12 C 0.12 1.76 7.63 -3.14 -0.02 1.74 16 13 C -0.07 -1.06 0.77 -154.43 -0.12 -1.18 16 14 C 0.10 1.28 7.72 -3.17 -0.02 1.26 16 15 C -0.11 -1.67 5.21 -26.72 -0.14 -1.81 16 16 C 0.15 2.84 6.38 -3.66 -0.02 2.82 16 17 N -0.59 -13.77 2.97 -172.51 -0.51 -14.28 16 18 C -0.25 -6.65 9.56 -15.06 -0.14 -6.79 16 19 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 20 C 0.00 0.10 4.89 -17.43 -0.09 0.01 16 21 N -0.90 -25.18 11.22 55.49 0.62 -24.56 16 22 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 C 0.17 3.72 5.21 -3.91 -0.02 3.70 16 27 C -0.13 -2.11 5.24 -26.98 -0.14 -2.25 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.93 7.18 -51.93 -0.37 0.56 16 31 H 0.21 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.41 2.65 9.06 45.56 0.41 3.06 16 33 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.09 1.36 7.41 -51.93 -0.38 0.98 16 35 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 37 H 0.05 0.72 8.01 -51.93 -0.42 0.30 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.37 7.49 -51.93 -0.39 -0.02 16 40 H 0.06 1.08 7.92 -51.93 -0.41 0.67 16 41 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.09 2.24 5.98 -51.93 -0.31 1.93 16 43 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 44 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -32.45 371.20 -8.80 -41.25 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.63 Total: 1.45 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -2.82 Total: 10.35 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.77 Total: -59.99 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.14 Total: -14.60 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.45 -8.80 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050628953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.067 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds