Wall clock time and date at job start Tue Mar 31 2020 17:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32161 * 120.53780 * 2 1 4 4 C 1.31854 * 120.97204 * 180.26704 * 3 2 1 5 5 N 1.31892 * 122.09189 * 359.75233 * 4 3 2 6 6 C 1.32132 * 120.96564 * 359.97438 * 5 4 3 7 7 C 1.39929 * 120.54175 * 179.74189 * 2 1 3 8 8 C 1.47839 * 120.93503 * 359.97438 * 7 2 1 9 9 O 1.21552 * 120.00078 * 353.94210 * 8 7 2 10 10 N 1.34778 * 119.99695 * 173.93443 * 8 7 2 11 11 C 1.46498 * 119.99506 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46753 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.51918 * 307.79213 * 12 11 10 14 14 C 1.55064 * 110.58340 * 185.00427 * 12 11 10 15 15 C 1.55030 * 102.12701 * 204.93199 * 14 12 11 16 16 C 1.53319 * 103.78804 * 20.86166 * 15 14 12 17 17 C 1.52652 * 115.56456 * 133.64285 * 16 15 14 18 18 N 1.47228 * 87.77863 * 90.04329 * 17 16 15 19 19 C 1.36934 * 135.96551 * 206.41185 * 18 17 16 20 20 H 1.08000 * 119.99914 * 353.53924 * 19 18 17 21 21 C 1.38810 * 119.99935 * 173.53898 * 19 18 17 22 22 N 1.31620 * 120.00093 * 173.61629 * 21 19 18 23 23 Si 1.86800 * 120.00106 * 353.62489 * 21 19 18 24 24 H 1.48499 * 109.47412 * 174.38919 * 23 21 19 25 25 H 1.48502 * 109.47223 * 54.39044 * 23 21 19 26 26 H 1.48499 * 109.46859 * 294.39114 * 23 21 19 27 27 C 1.47216 * 88.06553 * 26.67139 * 18 17 16 28 28 O 1.42843 * 108.32841 * 1.60273 * 16 15 14 29 29 H 1.08995 * 109.47231 * 264.65786 * 1 2 3 30 30 H 1.09003 * 109.47070 * 24.65920 * 1 2 3 31 31 H 1.09005 * 109.46587 * 144.65684 * 1 2 3 32 32 H 1.08000 * 118.95991 * 179.72429 * 4 3 2 33 33 H 1.07997 * 120.53672 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00075 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47403 * 60.00379 * 11 10 8 36 36 H 1.08997 * 109.47501 * 299.99818 * 11 10 8 37 37 H 1.08996 * 110.87447 * 86.77730 * 14 12 11 38 38 H 1.09003 * 110.86942 * 323.08732 * 14 12 11 39 39 H 1.08996 * 110.56668 * 262.28298 * 15 14 12 40 40 H 1.09002 * 110.68636 * 139.49784 * 15 14 12 41 41 H 1.08993 * 113.50092 * 335.31768 * 17 16 15 42 42 H 1.08996 * 113.56064 * 204.78165 * 17 16 15 43 43 H 0.97003 * 119.99587 * 5.12995 * 22 21 19 44 44 H 1.08998 * 113.50296 * 88.05661 * 27 18 17 45 45 H 1.09000 * 113.50439 * 218.60263 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0053 5 7 4.2062 0.0363 -0.0059 6 6 3.6165 -1.1462 -0.0008 7 6 2.2181 -1.2051 0.0054 8 6 1.5121 -2.5041 0.0118 9 8 0.3022 -2.5377 0.1236 10 7 2.2101 -3.6509 -0.1063 11 6 1.5105 -4.9380 -0.1005 12 6 2.5273 -6.0718 -0.2472 13 1 3.1705 -5.8989 -1.1101 14 6 1.8057 -7.4388 -0.3704 15 6 2.8876 -8.4253 0.1392 16 6 3.8290 -7.5406 0.9649 17 6 4.2270 -8.0963 2.3298 18 7 5.3739 -8.7410 1.6691 19 6 6.1538 -9.8419 1.9035 20 1 6.0332 -10.4044 2.8176 21 6 7.0993 -10.2349 0.9663 22 7 7.9336 -11.2142 1.2440 23 14 7.1878 -9.3736 -0.6889 24 1 8.3580 -9.8814 -1.4492 25 1 7.3313 -7.9105 -0.4786 26 1 5.9446 -9.6441 -1.4547 27 6 5.3192 -7.6803 0.6498 28 8 3.3143 -6.2081 0.9582 29 1 -0.3633 -0.0957 1.0231 30 1 -0.3633 0.9340 -0.4288 31 1 -0.3633 -0.8383 -0.5945 32 1 4.0127 2.0972 -0.0096 33 1 4.2039 -2.0523 -0.0009 34 1 3.1757 -3.6241 -0.1952 35 1 0.8055 -4.9722 -0.9311 36 1 0.9707 -5.0540 0.8393 37 1 1.5464 -7.6490 -1.4079 38 1 0.9213 -7.4697 0.2661 39 1 3.4210 -8.8747 -0.6983 40 1 2.4404 -9.1974 0.7654 41 1 3.5059 -8.8046 2.7378 42 1 4.5143 -7.3270 3.0465 43 1 7.8404 -11.7106 2.0722 44 1 5.9029 -6.7972 0.9097 45 1 5.5199 -8.0372 -0.3603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053579049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:13 Heat of formation + Delta-G solvation = 41.201150 kcal Electronic energy + Delta-G solvation = -28194.590247 eV Core-core repulsion = 24214.953269 eV Total energy + Delta-G solvation = -3979.636978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71793 -40.39258 -39.56047 -37.11089 -35.34102 -34.46632 -33.16612 -32.38289 -32.08343 -29.96327 -28.75927 -27.19593 -25.64817 -25.61935 -23.94818 -23.18912 -21.67641 -21.37332 -21.10153 -19.23837 -18.31958 -18.12229 -17.55570 -17.21978 -16.75944 -16.11819 -15.83939 -15.74165 -15.17534 -14.83939 -14.75096 -14.46901 -14.08134 -13.78346 -13.52615 -13.38024 -13.25106 -13.14401 -13.07954 -12.64608 -12.41610 -12.09454 -12.02967 -11.64924 -11.51243 -11.30242 -11.14146 -11.02188 -10.71654 -10.60390 -10.49232 -10.11483 -10.06532 -9.87693 -9.75035 -9.40746 -9.18139 -9.02251 -8.77083 -7.26097 -6.37717 -3.31332 -0.00909 0.56328 2.44562 2.67000 3.32720 3.33591 3.36834 3.56450 3.59549 3.60664 3.71032 3.89344 4.23940 4.42330 4.48803 4.52499 4.59801 4.76846 4.80993 4.82391 4.88149 5.03727 5.05199 5.27685 5.31664 5.32894 5.39014 5.42090 5.49353 5.64072 5.71353 5.79491 5.92910 6.05624 6.07213 6.14755 6.16481 6.23279 6.24816 6.30001 6.43591 6.47604 6.98870 7.04880 7.21590 7.54783 7.75489 8.16770 8.90336 9.42169 10.26713 11.14024 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.002619 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.113626 B =10689.475466 C =11582.344429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.236 3.764 3 N -0.527 5.527 4 C 0.319 3.681 5 N -0.526 5.526 6 C 0.189 3.811 7 C -0.248 4.248 8 C 0.570 3.430 9 O -0.528 6.528 10 N -0.716 5.716 11 C 0.130 3.870 12 C 0.059 3.941 13 H 0.077 0.923 14 C -0.145 4.145 15 C -0.115 4.115 16 C 0.059 3.941 17 C 0.134 3.866 18 N -0.619 5.619 19 C -0.301 4.301 20 H 0.083 0.917 21 C -0.023 4.023 22 N -0.932 5.932 23 Si 1.071 2.929 24 H -0.295 1.295 25 H -0.286 1.286 26 H -0.293 1.293 27 C 0.095 3.905 28 O -0.356 6.356 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.202 0.798 33 H 0.173 0.827 34 H 0.404 0.596 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.261 0.739 44 H 0.050 0.950 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 20.725 -5.985 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 N -0.241 5.241 4 C 0.033 3.967 5 N -0.240 5.240 6 C 0.022 3.978 7 C -0.255 4.255 8 C 0.356 3.644 9 O -0.406 6.406 10 N -0.368 5.368 11 C 0.007 3.993 12 C 0.001 3.999 13 H 0.095 0.905 14 C -0.183 4.183 15 C -0.153 4.153 16 C 0.018 3.982 17 C 0.007 3.993 18 N -0.350 5.350 19 C -0.427 4.427 20 H 0.101 0.899 21 C -0.222 4.222 22 N -0.575 5.575 23 Si 0.905 3.095 24 H -0.223 1.223 25 H -0.214 1.214 26 H -0.221 1.221 27 C -0.031 4.031 28 O -0.274 6.274 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.219 0.781 33 H 0.190 0.810 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.572 21.562 -7.100 26.975 hybrid contribution -0.460 -0.959 1.443 1.792 sum -15.032 20.604 -5.657 26.124 Atomic orbital electron populations 1.21119 0.86492 1.04595 1.04811 1.22028 0.98231 0.86469 0.84347 1.68444 1.10308 1.29693 1.15693 1.25284 0.86752 0.97365 0.87340 1.68491 1.41455 0.98930 1.15120 1.23555 0.90821 0.96899 0.86498 1.21608 0.96297 0.96201 1.11435 1.17701 0.86848 0.83073 0.76818 1.90747 1.13279 1.86994 1.49559 1.45847 1.11260 1.05698 1.73980 1.21507 0.94135 0.80086 1.03620 1.23392 0.92297 0.94642 0.89582 0.90480 1.23140 0.99050 0.93661 1.02449 1.22400 0.95127 0.97630 1.00101 1.23720 0.93803 0.81321 0.99322 1.22382 0.89749 0.94413 0.92766 1.45734 1.35732 1.25042 1.28449 1.20105 1.16229 1.01429 1.04983 0.89921 1.25732 0.93906 0.99636 1.02957 1.70929 1.35367 1.23206 1.27958 0.83704 0.75142 0.74904 0.75791 1.22275 1.21377 1.22149 1.23199 0.92845 0.92457 0.94612 1.88769 1.67454 1.30786 1.40363 0.89022 0.90522 0.87438 0.78112 0.80977 0.76046 0.89691 0.89994 0.89965 0.90096 0.90098 0.89781 0.93058 0.93590 0.92838 0.93234 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.02 36.01 0.32 -0.63 16 2 C 0.24 2.31 6.86 -81.82 -0.56 1.75 16 3 N -0.53 -5.10 10.36 -10.48 -0.11 -5.20 16 4 C 0.32 2.68 12.27 -92.02 -1.13 1.55 16 5 N -0.53 -4.97 10.42 -14.24 -0.15 -5.12 16 6 C 0.19 1.64 10.80 -16.78 -0.18 1.46 16 7 C -0.25 -2.36 5.91 -104.69 -0.62 -2.98 16 8 C 0.57 5.87 7.73 -12.33 -0.10 5.77 16 9 O -0.53 -6.54 13.52 5.32 0.07 -6.47 16 10 N -0.72 -6.48 5.51 -61.25 -0.34 -6.82 16 11 C 0.13 1.21 5.41 -4.04 -0.02 1.19 16 12 C 0.06 0.63 3.38 -25.64 -0.09 0.55 16 13 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 14 C -0.14 -1.51 6.60 -24.57 -0.16 -1.68 16 15 C -0.11 -1.68 6.46 -25.49 -0.16 -1.84 16 16 C 0.06 1.00 1.66 -90.66 -0.15 0.85 16 17 C 0.13 2.62 8.20 -8.03 -0.07 2.56 16 18 N -0.62 -14.94 3.62 -184.61 -0.67 -15.61 16 19 C -0.30 -8.54 11.08 -15.06 -0.17 -8.70 16 20 H 0.08 2.47 8.05 -52.49 -0.42 2.04 16 21 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 22 N -0.93 -29.06 13.70 55.49 0.76 -28.30 16 23 Si 1.07 26.16 25.07 -169.99 -4.26 21.90 16 24 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -6.49 6.04 56.52 0.34 -6.15 16 26 H -0.29 -6.67 7.02 56.52 0.40 -6.27 16 27 C 0.09 1.96 5.49 -7.89 -0.04 1.92 16 28 O -0.36 -5.16 11.02 -35.23 -0.39 -5.55 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 0.99 5.91 -51.93 -0.31 0.69 16 32 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.17 1.08 6.58 -52.49 -0.35 0.73 16 34 H 0.40 3.07 6.64 -40.82 -0.27 2.80 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16 40 H 0.08 1.23 7.81 -51.93 -0.41 0.82 16 41 H 0.05 0.96 7.91 -51.93 -0.41 0.55 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.26 8.04 8.73 -40.82 -0.36 7.69 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.98 3.75 -51.93 -0.19 0.79 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -34.31 364.22 -9.01 -43.33 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.20 Total: 1.36 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.22 Total: 0.99 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.50 Total: -61.05 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.32 Total: -12.01 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -4.26 Total: 21.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.31 -9.01 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053579049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.528 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds