Wall clock time and date at job start Tue Mar 31 2020 17:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38819 * 120.41705 * 2 1 4 4 C 1.38781 * 118.50777 * 180.02562 * 3 2 1 5 5 N 1.32126 * 119.16175 * 0.02562 * 4 3 2 6 6 C 1.32439 * 120.77472 * 0.02562 * 5 4 3 7 7 C 1.48531 * 119.19117 * 180.02562 * 6 5 4 8 8 O 1.21469 * 120.00339 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99794 * 359.97438 * 7 6 5 10 10 C 1.46507 * 119.99725 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46647 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.36971 * 57.81596 * 11 10 9 13 13 C 1.54555 * 110.32138 * 179.97438 * 11 10 9 14 14 C 1.54774 * 104.07821 * 142.48979 * 13 11 10 15 15 C 1.53348 * 103.67263 * 359.14144 * 14 13 11 16 16 C 1.52303 * 116.13344 * 108.91148 * 15 14 13 17 17 N 1.47284 * 87.68708 * 91.18103 * 16 15 14 18 18 C 1.36942 * 135.92786 * 206.12790 * 17 16 15 19 19 H 1.08003 * 120.00136 * 6.79529 * 18 17 16 20 20 C 1.38804 * 119.99713 * 186.79235 * 18 17 16 21 21 N 1.31621 * 119.99893 * 172.37074 * 20 18 17 22 22 Si 1.86794 * 120.00271 * 352.37001 * 20 18 17 23 23 H 1.48509 * 109.47067 * 175.35403 * 22 20 18 24 24 H 1.48499 * 109.47130 * 55.35383 * 22 20 18 25 25 H 1.48497 * 109.47427 * 295.35226 * 22 20 18 26 26 C 1.47281 * 88.14217 * 26.38451 * 17 16 15 27 27 O 1.43112 * 106.44597 * 337.44794 * 15 14 13 28 28 N 1.32103 * 120.42003 * 180.28078 * 2 1 3 29 29 H 1.09002 * 109.47550 * 89.99868 * 1 2 3 30 30 H 1.09005 * 109.47255 * 209.99628 * 1 2 3 31 31 H 1.08998 * 109.47271 * 329.99883 * 1 2 3 32 32 H 1.07996 * 120.74916 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.42023 * 179.97438 * 4 3 2 34 34 H 0.96998 * 120.00139 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47167 * 60.00159 * 10 9 7 36 36 H 1.08993 * 109.46813 * 299.99688 * 10 9 7 37 37 H 1.08995 * 110.50909 * 23.84433 * 13 11 10 38 38 H 1.08997 * 110.50963 * 261.13338 * 13 11 10 39 39 H 1.08997 * 110.58309 * 240.59490 * 14 13 11 40 40 H 1.09000 * 110.71110 * 117.74543 * 14 13 11 41 41 H 1.09003 * 113.51527 * 336.47994 * 16 15 14 42 42 H 1.08998 * 113.58332 * 205.89684 * 16 15 14 43 43 H 0.97008 * 119.99965 * 4.91436 * 21 20 18 44 44 H 1.08999 * 113.51942 * 88.32370 * 26 17 16 45 45 H 1.09003 * 113.51069 * 218.91606 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5968 1.1509 -0.0005 5 7 4.2019 -0.0237 -0.0016 6 6 3.5006 -1.1472 -0.0026 7 6 4.2169 -2.4483 -0.0031 8 8 3.5884 -3.4878 -0.0045 9 7 5.5645 -2.4757 -0.0031 10 6 6.2711 -3.7591 -0.0042 11 6 7.7806 -3.5100 -0.0046 12 1 8.0667 -2.9118 0.8605 13 6 8.5461 -4.8527 -0.0051 14 6 9.7669 -4.5897 -0.9195 15 6 9.5748 -3.1370 -1.3716 16 6 10.5424 -2.1181 -0.7841 17 7 11.4131 -2.3636 -1.9464 18 6 12.7536 -2.2670 -2.2094 19 1 13.4458 -2.0434 -1.4111 20 6 13.2226 -2.4564 -3.5020 21 7 14.4854 -2.2172 -3.7855 22 14 12.0615 -3.0507 -4.8392 23 1 12.7732 -3.0642 -6.1426 24 1 10.8935 -2.1375 -4.9224 25 1 11.5950 -4.4229 -4.5157 26 6 10.2114 -2.7521 -2.7040 27 8 8.1805 -2.8488 -1.2275 28 7 2.1758 -1.1392 -0.0056 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6890 2.1432 -0.0004 33 1 4.1744 2.0635 -0.0010 34 1 6.0664 -1.6457 -0.0024 35 1 5.9962 -4.3244 -0.8947 36 1 5.9962 -4.3259 0.8853 37 1 7.9240 -5.6468 -0.4178 38 1 8.8723 -5.1067 1.0034 39 1 9.7554 -5.2625 -1.7769 40 1 10.6969 -4.6975 -0.3614 41 1 10.9822 -2.4316 0.1627 42 1 10.1406 -1.1055 -0.7478 43 1 15.1044 -1.9775 -3.0781 44 1 9.7176 -1.9142 -3.1961 45 1 10.3729 -3.5988 -3.3713 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053595607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:21 Heat of formation + Delta-G solvation = 40.485065 kcal Electronic energy + Delta-G solvation = -27895.129901 eV Core-core repulsion = 23915.461871 eV Total energy + Delta-G solvation = -3979.668029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64865 -40.35471 -39.35995 -36.97884 -35.19107 -34.51046 -33.09037 -32.33843 -32.03348 -29.82828 -28.92730 -27.30979 -25.84083 -25.50244 -23.68378 -23.50496 -21.54556 -21.32326 -20.86212 -19.14392 -18.32859 -18.12797 -17.45291 -16.61160 -16.33621 -16.05397 -15.80988 -15.76424 -15.36929 -14.85773 -14.77728 -14.54492 -13.98856 -13.70563 -13.62835 -13.51522 -13.28256 -13.01578 -12.93147 -12.84763 -12.40301 -11.95524 -11.68115 -11.54698 -11.52821 -11.29226 -11.06270 -11.03950 -10.67870 -10.43864 -10.33211 -10.28442 -10.05975 -9.75076 -9.69356 -9.28576 -9.23988 -8.95307 -8.88600 -7.18394 -6.34993 -3.26300 0.04704 0.59781 2.35921 2.49613 3.41193 3.44902 3.46727 3.51460 3.63871 3.73650 3.90968 3.99188 4.41887 4.52294 4.55692 4.57674 4.66636 4.75913 4.82366 4.92206 4.93304 5.00162 5.02409 5.16526 5.23179 5.35677 5.40549 5.41196 5.46449 5.58463 5.77351 5.83005 5.90619 6.13090 6.16998 6.19042 6.23056 6.27402 6.32731 6.36609 6.47742 6.54893 7.03652 7.15394 7.25003 7.56326 7.93136 8.20253 8.94197 9.46443 10.31507 11.17729 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.002446 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.551560 B =11445.730391 C =12159.923281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.171 3.829 3 C -0.211 4.211 4 C 0.151 3.849 5 N -0.496 5.496 6 C 0.291 3.709 7 C 0.583 3.417 8 O -0.509 6.509 9 N -0.699 5.699 10 C 0.128 3.872 11 C 0.062 3.938 12 H 0.077 0.923 13 C -0.145 4.145 14 C -0.114 4.114 15 C 0.059 3.941 16 C 0.111 3.889 17 N -0.620 5.620 18 C -0.303 4.303 19 H 0.084 0.916 20 C -0.023 4.023 21 N -0.932 5.932 22 Si 1.068 2.932 23 H -0.294 1.294 24 H -0.285 1.285 25 H -0.293 1.293 26 C 0.115 3.885 27 O -0.353 6.353 28 N -0.471 5.471 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.417 0.583 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.261 0.739 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.570 4.388 11.196 29.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.024 3.976 3 C -0.233 4.233 4 C -0.015 4.015 5 N -0.213 5.213 6 C 0.020 3.980 7 C 0.364 3.636 8 O -0.382 6.382 9 N -0.352 5.352 10 C 0.005 3.995 11 C 0.004 3.996 12 H 0.095 0.905 13 C -0.183 4.183 14 C -0.152 4.152 15 C 0.018 3.982 16 C -0.016 4.016 17 N -0.350 5.350 18 C -0.429 4.429 19 H 0.102 0.898 20 C -0.222 4.222 21 N -0.574 5.574 22 Si 0.900 3.100 23 H -0.221 1.221 24 H -0.212 1.212 25 H -0.221 1.221 26 C -0.011 4.011 27 O -0.271 6.271 28 N -0.187 5.187 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.172 0.828 33 H 0.195 0.805 34 H 0.254 0.746 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.492 2.518 9.380 28.216 hybrid contribution 0.104 1.764 1.754 2.490 sum -26.388 4.282 11.134 28.959 Atomic orbital electron populations 1.20827 0.87162 1.04408 1.04081 1.21899 0.98024 0.87757 0.89898 1.23042 0.96682 1.00767 1.02819 1.23347 0.92223 0.96060 0.89890 1.68325 1.41578 0.98857 1.12589 1.22860 0.87448 0.92987 0.94668 1.17209 0.82285 0.85985 0.78099 1.90807 1.66914 1.32123 1.48309 1.45704 1.05266 1.11032 1.73182 1.21606 0.89460 0.85069 1.03412 1.23216 0.92829 0.94012 0.89578 0.90530 1.22950 0.97210 0.97017 1.01115 1.22338 0.98193 0.94980 0.99707 1.23644 0.80097 0.94604 0.99821 1.22673 0.89733 0.96396 0.92800 1.45753 1.01022 1.78768 1.09469 1.20079 0.78516 1.47819 0.96478 0.89813 1.25740 0.99863 0.99406 0.97214 1.70931 1.03480 1.48771 1.34224 0.83730 0.74150 0.76099 0.75994 1.22122 1.21163 1.22072 1.22680 0.87045 0.98266 0.93061 1.88967 1.24212 1.73393 1.40528 1.68092 1.08570 1.30519 1.11501 0.89309 0.89537 0.89794 0.82828 0.80475 0.74585 0.90081 0.89737 0.90325 0.90213 0.90375 0.89629 0.93508 0.93725 0.92891 0.92821 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.22 36.00 0.37 -0.15 16 2 C 0.17 1.43 6.82 -82.26 -0.56 0.87 16 3 C -0.21 -1.27 9.87 -39.17 -0.39 -1.66 16 4 C 0.15 1.10 11.30 -17.22 -0.19 0.91 16 5 N -0.50 -5.36 9.57 -11.12 -0.11 -5.47 16 6 C 0.29 3.71 7.59 -157.08 -1.19 2.52 16 7 C 0.58 8.18 7.85 -12.01 -0.09 8.09 16 8 O -0.51 -8.53 16.86 5.39 0.09 -8.44 16 9 N -0.70 -8.54 5.50 -61.03 -0.34 -8.88 16 10 C 0.13 1.46 5.28 -4.04 -0.02 1.44 16 11 C 0.06 0.75 3.35 -25.92 -0.09 0.66 16 12 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 13 C -0.14 -1.65 6.65 -24.98 -0.17 -1.82 16 14 C -0.11 -1.75 6.50 -25.62 -0.17 -1.92 16 15 C 0.06 1.05 1.39 -91.01 -0.13 0.93 16 16 C 0.11 2.20 8.18 -7.86 -0.06 2.14 16 17 N -0.62 -15.29 3.68 -184.90 -0.68 -15.97 16 18 C -0.30 -8.70 11.08 -15.06 -0.17 -8.86 16 19 H 0.08 2.52 8.05 -52.48 -0.42 2.09 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 21 N -0.93 -29.37 13.70 55.49 0.76 -28.61 16 22 Si 1.07 26.97 25.13 -169.99 -4.27 22.70 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -6.79 6.10 56.52 0.34 -6.45 16 25 H -0.29 -6.95 6.63 56.52 0.37 -6.57 16 26 C 0.11 2.52 5.28 -7.71 -0.04 2.48 16 27 O -0.35 -5.64 11.12 -35.23 -0.39 -6.03 16 28 N -0.47 -5.80 10.07 -7.38 -0.07 -5.88 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.18 8.10 -51.93 -0.42 -0.24 16 32 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 33 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.42 4.87 7.78 -40.82 -0.32 4.55 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 40 H 0.09 1.36 7.92 -51.93 -0.41 0.95 16 41 H 0.05 0.87 8.07 -51.93 -0.42 0.46 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 44 H 0.05 1.20 7.67 -51.93 -0.40 0.80 16 45 H 0.06 1.26 4.69 -51.93 -0.24 1.01 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -36.45 372.47 -8.90 -45.34 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.50 Total: 0.78 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -3.00 Total: 4.83 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.44 Total: -64.80 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.30 Total: -14.47 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.27 Total: 22.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.45 -8.90 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053595607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.830 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds