Wall clock time and date at job start Tue Mar 31 2020 17:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38819 * 120.41705 * 2 1 4 4 C 1.38781 * 118.50777 * 180.02562 * 3 2 1 5 5 N 1.32126 * 119.16175 * 0.02562 * 4 3 2 6 6 C 1.32439 * 120.77472 * 0.02562 * 5 4 3 7 7 C 1.48531 * 119.19117 * 180.02562 * 6 5 4 8 8 O 1.21469 * 120.00339 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99794 * 359.97438 * 7 6 5 10 10 C 1.46507 * 119.99725 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46647 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.36971 * 57.81596 * 11 10 9 13 13 C 1.54555 * 110.32138 * 179.97438 * 11 10 9 14 14 C 1.54774 * 104.07821 * 142.48979 * 13 11 10 15 15 C 1.53348 * 103.67263 * 359.14144 * 14 13 11 16 16 C 1.52303 * 116.13344 * 108.91148 * 15 14 13 17 17 N 1.47284 * 87.68708 * 91.18103 * 16 15 14 18 18 C 1.36942 * 135.92786 * 206.12790 * 17 16 15 19 19 H 1.08003 * 120.00136 * 6.79529 * 18 17 16 20 20 C 1.38804 * 119.99713 * 186.79235 * 18 17 16 21 21 N 1.31621 * 119.99893 * 172.37074 * 20 18 17 22 22 Si 1.86794 * 120.00271 * 352.37001 * 20 18 17 23 23 H 1.48509 * 109.47067 * 175.35403 * 22 20 18 24 24 H 1.48499 * 109.47130 * 55.35383 * 22 20 18 25 25 H 1.48497 * 109.47427 * 295.35226 * 22 20 18 26 26 C 1.47281 * 88.14217 * 26.38451 * 17 16 15 27 27 O 1.43112 * 106.44597 * 337.44794 * 15 14 13 28 28 N 1.32103 * 120.42003 * 180.28078 * 2 1 3 29 29 H 1.09002 * 109.47550 * 89.99868 * 1 2 3 30 30 H 1.09005 * 109.47255 * 209.99628 * 1 2 3 31 31 H 1.08998 * 109.47271 * 329.99883 * 1 2 3 32 32 H 1.07996 * 120.74916 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.42023 * 179.97438 * 4 3 2 34 34 H 0.96998 * 120.00139 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47167 * 60.00159 * 10 9 7 36 36 H 1.08993 * 109.46813 * 299.99688 * 10 9 7 37 37 H 1.08995 * 110.50909 * 23.84433 * 13 11 10 38 38 H 1.08997 * 110.50963 * 261.13338 * 13 11 10 39 39 H 1.08997 * 110.58309 * 240.59490 * 14 13 11 40 40 H 1.09000 * 110.71110 * 117.74543 * 14 13 11 41 41 H 1.09003 * 113.51527 * 336.47994 * 16 15 14 42 42 H 1.08998 * 113.58332 * 205.89684 * 16 15 14 43 43 H 0.97008 * 119.99965 * 4.91436 * 21 20 18 44 44 H 1.08999 * 113.51942 * 88.32370 * 26 17 16 45 45 H 1.09003 * 113.51069 * 218.91606 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5968 1.1509 -0.0005 5 7 4.2019 -0.0237 -0.0016 6 6 3.5006 -1.1472 -0.0026 7 6 4.2169 -2.4483 -0.0031 8 8 3.5884 -3.4878 -0.0045 9 7 5.5645 -2.4757 -0.0031 10 6 6.2711 -3.7591 -0.0042 11 6 7.7806 -3.5100 -0.0046 12 1 8.0667 -2.9118 0.8605 13 6 8.5461 -4.8527 -0.0051 14 6 9.7669 -4.5897 -0.9195 15 6 9.5748 -3.1370 -1.3716 16 6 10.5424 -2.1181 -0.7841 17 7 11.4131 -2.3636 -1.9464 18 6 12.7536 -2.2670 -2.2094 19 1 13.4458 -2.0434 -1.4111 20 6 13.2226 -2.4564 -3.5020 21 7 14.4854 -2.2172 -3.7855 22 14 12.0615 -3.0507 -4.8392 23 1 12.7732 -3.0642 -6.1426 24 1 10.8935 -2.1375 -4.9224 25 1 11.5950 -4.4229 -4.5157 26 6 10.2114 -2.7521 -2.7040 27 8 8.1805 -2.8488 -1.2275 28 7 2.1758 -1.1392 -0.0056 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6890 2.1432 -0.0004 33 1 4.1744 2.0635 -0.0010 34 1 6.0664 -1.6457 -0.0024 35 1 5.9962 -4.3244 -0.8947 36 1 5.9962 -4.3259 0.8853 37 1 7.9240 -5.6468 -0.4178 38 1 8.8723 -5.1067 1.0034 39 1 9.7554 -5.2625 -1.7769 40 1 10.6969 -4.6975 -0.3614 41 1 10.9822 -2.4316 0.1627 42 1 10.1406 -1.1055 -0.7478 43 1 15.1044 -1.9775 -3.0781 44 1 9.7176 -1.9142 -3.1961 45 1 10.3729 -3.5988 -3.3713 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053595607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:20 Heat of formation + Delta-G solvation = 11.920434 kcal Electronic energy + Delta-G solvation = -27896.368556 eV Core-core repulsion = 23915.461871 eV Total energy + Delta-G solvation = -3980.906685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34906 -41.69781 -40.39135 -38.42553 -36.06439 -35.38764 -34.48369 -33.74828 -33.13650 -31.04751 -29.60317 -28.86174 -27.31150 -26.66251 -24.74950 -24.14082 -23.30641 -22.32886 -21.80026 -20.75768 -19.53390 -19.17269 -18.83289 -17.68341 -17.46630 -16.99274 -16.85821 -16.69510 -16.43062 -16.34859 -15.83936 -15.56187 -15.24679 -15.15893 -14.79277 -14.60818 -14.26859 -14.17356 -13.92417 -13.62245 -13.37208 -13.18889 -13.15335 -12.80580 -12.68263 -12.53895 -12.37248 -12.23449 -12.04918 -11.74871 -11.64849 -11.40092 -11.27277 -11.23746 -11.03305 -10.64811 -10.48427 -10.43094 -10.22831 -9.24980 -8.67910 -5.50856 -0.64902 0.01236 1.37580 1.45792 1.48079 1.64195 1.64928 2.50274 2.56673 2.72749 2.84894 2.94581 3.12552 3.23340 3.38827 3.50302 3.58341 3.66818 3.82970 3.95340 4.01797 4.10219 4.28425 4.35192 4.41071 4.46500 4.53352 4.57248 4.61774 4.67220 4.70843 4.77019 4.78555 4.84638 4.93242 5.00753 5.04893 5.09584 5.11624 5.22721 5.24649 5.35380 5.88716 5.90975 5.95882 6.22765 6.65820 6.80732 6.99319 7.27940 8.21077 8.87656 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.002446 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.551560 B =11445.730391 C =12159.923281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.151 3.849 3 C -0.185 4.185 4 C 0.138 3.862 5 N -0.511 5.511 6 C 0.261 3.739 7 C 0.580 3.420 8 O -0.549 6.549 9 N -0.692 5.692 10 C 0.130 3.870 11 C 0.062 3.938 12 H 0.093 0.907 13 C -0.133 4.133 14 C -0.118 4.118 15 C 0.082 3.918 16 C 0.110 3.890 17 N -0.648 5.648 18 C -0.287 4.287 19 H 0.057 0.943 20 C -0.081 4.081 21 N -0.967 5.967 22 Si 1.103 2.897 23 H -0.302 1.302 24 H -0.266 1.266 25 H -0.270 1.270 26 C 0.103 3.897 27 O -0.363 6.363 28 N -0.507 5.507 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.200 0.800 33 H 0.214 0.786 34 H 0.420 0.580 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.248 0.752 44 H 0.050 0.950 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.571 5.249 12.262 32.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.005 3.995 3 C -0.206 4.206 4 C -0.026 4.026 5 N -0.229 5.229 6 C -0.009 4.009 7 C 0.362 3.638 8 O -0.424 6.424 9 N -0.344 5.344 10 C 0.007 3.993 11 C 0.005 3.995 12 H 0.111 0.889 13 C -0.171 4.171 14 C -0.156 4.156 15 C 0.042 3.958 16 C -0.016 4.016 17 N -0.378 5.378 18 C -0.414 4.414 19 H 0.075 0.925 20 C -0.273 4.273 21 N -0.613 5.613 22 Si 0.930 3.070 23 H -0.230 1.230 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.022 4.022 27 O -0.282 6.282 28 N -0.224 5.224 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.217 0.783 33 H 0.230 0.770 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.530 3.400 10.496 31.524 hybrid contribution 0.936 1.658 1.544 2.451 sum -28.594 5.058 12.040 31.435 Atomic orbital electron populations 1.20947 0.84895 1.05408 1.04904 1.22596 0.99597 0.87665 0.89662 1.23527 0.96207 1.01702 0.99206 1.24077 0.93466 0.95984 0.89079 1.68290 1.42051 0.99448 1.13085 1.22535 0.87873 0.92985 0.97489 1.17532 0.82596 0.86365 0.77292 1.90763 1.67684 1.33579 1.50414 1.45704 1.04910 1.11445 1.72366 1.21647 0.88866 0.84876 1.03898 1.23429 0.93141 0.94512 0.88426 0.88891 1.22945 0.95399 0.96883 1.01845 1.22369 0.99739 0.93015 1.00448 1.23157 0.80861 0.95469 0.96359 1.22846 0.89342 0.97439 0.91972 1.45782 1.00513 1.79399 1.12140 1.19947 0.80551 1.45365 0.95586 0.92521 1.26958 1.00425 1.00117 0.99842 1.71026 1.04490 1.51767 1.33994 0.83313 0.73126 0.77305 0.73288 1.23031 1.19171 1.19601 1.22818 0.86327 0.98055 0.95021 1.88955 1.22603 1.74069 1.42542 1.68039 1.08726 1.32962 1.12694 0.88427 0.90801 0.86520 0.78279 0.76974 0.74265 0.91007 0.87870 0.88693 0.87527 0.90547 0.90310 0.92211 0.93183 0.94269 0.93185 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.22 71.23 0.73 -0.03 16 2 C 0.15 2.24 6.82 42.66 0.29 2.53 16 3 C -0.19 -1.59 9.87 22.54 0.22 -1.37 16 4 C 0.14 1.64 11.30 84.78 0.96 2.60 16 5 N -0.51 -10.43 9.57 -189.11 -1.81 -12.24 16 6 C 0.26 6.65 7.59 137.68 1.05 7.69 16 7 C 0.58 16.37 7.85 86.99 0.68 17.05 16 8 O -0.55 -18.79 16.86 -3.62 -0.06 -18.85 16 9 N -0.69 -16.27 5.50 -465.30 -2.56 -18.84 16 10 C 0.13 2.72 5.28 86.38 0.46 3.17 16 11 C 0.06 1.32 3.35 31.12 0.10 1.43 16 12 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 13 C -0.13 -2.55 6.65 31.73 0.21 -2.33 16 14 C -0.12 -3.31 6.50 31.32 0.20 -3.10 16 15 C 0.08 2.78 1.39 -11.04 -0.02 2.77 16 16 C 0.11 4.19 8.18 83.48 0.68 4.88 16 17 N -0.65 -31.64 3.68 -740.40 -2.73 -34.36 16 18 C -0.29 -16.76 11.08 84.03 0.93 -15.83 16 19 H 0.06 3.53 8.05 -2.91 -0.02 3.51 16 20 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 21 N -0.97 -62.82 13.70 21.65 0.30 -62.52 16 22 Si 1.10 54.55 25.13 68.60 1.72 56.28 16 23 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 24 H -0.27 -12.19 6.10 99.48 0.61 -11.59 16 25 H -0.27 -12.17 6.63 99.48 0.66 -11.51 16 26 C 0.10 4.35 5.28 83.58 0.44 4.80 16 27 O -0.36 -10.76 11.12 -148.98 -1.66 -12.41 16 28 N -0.51 -12.43 10.07 -177.26 -1.78 -14.21 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.12 0.05 8.10 -2.39 -0.02 0.04 16 32 H 0.20 -0.21 8.06 -2.91 -0.02 -0.23 16 33 H 0.21 0.80 8.06 -2.91 -0.02 0.77 16 34 H 0.42 9.33 7.78 -92.71 -0.72 8.61 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.57 7.87 -2.39 -0.02 1.55 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 2.18 8.11 -2.39 -0.02 2.16 16 40 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 41 H 0.06 2.12 8.07 -2.39 -0.02 2.11 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.25 16.09 8.73 -92.70 -0.81 15.28 16 44 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 45 H 0.05 2.33 4.69 -2.39 -0.01 2.32 16 Total: -1.00 -83.59 372.47 -1.06 -84.65 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.11 Total: 12.71 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 7.41 Total: 19.80 kcal Atomic # 7 Polarization: -133.59 SS G_CDS: -8.59 Total: -142.17 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.72 Total: -31.27 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 1.72 Total: 56.28 kcal Total: -83.59 -1.06 -84.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053595607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.570 kcal (2) G-P(sol) polarization free energy of solvation -83.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds