Wall clock time and date at job start Tue Mar 31 2020 16:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38802 * 120.42925 * 2 1 4 4 C 1.39497 * 118.26710 * 180.02562 * 3 2 1 5 5 C 1.48442 * 120.55318 * 179.97438 * 4 3 2 6 6 O 1.21479 * 119.99959 * 0.02562 * 5 4 3 7 7 N 1.34785 * 120.00191 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99978 * 179.97438 * 7 5 4 9 9 H 1.09005 * 110.93816 * 328.65969 * 8 7 5 10 10 C 1.55052 * 110.87065 * 92.30909 * 8 7 5 11 11 O 1.44569 * 103.64858 * 81.55679 * 10 8 7 12 12 C 1.42970 * 106.78687 * 39.19304 * 11 10 8 13 13 C 1.53218 * 115.36238 * 104.66846 * 12 11 10 14 14 N 1.47720 * 85.89933 * 93.48363 * 13 12 11 15 15 C 1.36938 * 134.43753 * 204.10066 * 14 13 12 16 16 H 1.07994 * 120.00432 * 173.52724 * 15 14 13 17 17 C 1.38814 * 119.99419 * 353.53213 * 15 14 13 18 18 N 1.31617 * 120.00677 * 5.08351 * 17 15 14 19 19 Si 1.86807 * 119.99551 * 185.08171 * 17 15 14 20 20 H 1.48501 * 109.46932 * 94.99045 * 19 17 15 21 21 H 1.48504 * 109.46832 * 214.98699 * 19 17 15 22 22 H 1.48493 * 109.47329 * 334.98393 * 19 17 15 23 23 C 1.47717 * 91.13173 * 24.12176 * 14 13 12 24 24 C 1.53436 * 108.17238 * 334.25879 * 12 11 10 25 25 N 1.33113 * 118.89446 * 0.25258 * 4 3 2 26 26 C 1.31553 * 120.73833 * 359.49013 * 25 4 3 27 27 C 1.50701 * 119.04048 * 180.24191 * 26 25 4 28 28 N 1.31916 * 121.91652 * 0.52612 * 26 25 4 29 29 H 1.09001 * 109.47194 * 89.99220 * 1 2 3 30 30 H 1.09000 * 109.47217 * 209.99920 * 1 2 3 31 31 H 1.08998 * 109.47018 * 329.99742 * 1 2 3 32 32 H 1.07997 * 120.86964 * 0.05291 * 3 2 1 33 33 H 0.96999 * 119.99365 * 0.02562 * 7 5 4 34 34 H 1.09005 * 110.59433 * 200.09412 * 10 8 7 35 35 H 1.08996 * 110.59088 * 322.86359 * 10 8 7 36 36 H 1.08994 * 113.80814 * 207.73015 * 13 12 11 37 37 H 1.09005 * 113.80422 * 339.24029 * 13 12 11 38 38 H 0.96997 * 120.00697 * 180.02562 * 18 17 15 39 39 H 1.09008 * 113.80485 * 221.64252 * 23 14 13 40 40 H 1.08995 * 113.91681 * 90.13776 * 23 14 13 41 41 H 1.09005 * 110.55221 * 120.19461 * 24 12 11 42 42 H 1.08997 * 110.55090 * 242.86270 * 24 12 11 43 43 H 1.09004 * 109.47059 * 270.27506 * 27 26 25 44 44 H 1.08997 * 109.46843 * 30.27447 * 27 26 25 45 45 H 1.08995 * 109.47265 * 150.27373 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6040 1.1442 -0.0005 5 6 4.4062 2.3931 -0.0011 6 8 3.8494 3.4728 -0.0007 7 7 5.7526 2.3293 -0.0012 8 6 6.5443 3.5619 -0.0023 9 1 6.0232 4.3591 -0.5325 10 6 6.8920 3.9965 1.4449 11 8 8.0351 3.1779 1.7815 12 6 8.8489 3.1028 0.6085 13 6 10.1189 3.9595 0.6348 14 7 10.7978 2.7487 1.1399 15 6 11.9274 2.5211 1.8798 16 1 12.1624 1.5210 2.2129 17 6 12.7703 3.5760 2.2018 18 7 12.4343 4.8079 1.8831 19 14 14.3817 3.2469 3.0877 20 1 15.4796 3.1374 2.0937 21 1 14.6699 4.3642 4.0225 22 1 14.2767 1.9775 3.8511 23 6 9.7710 1.8816 0.5270 24 6 7.9470 3.3167 -0.6142 25 7 4.2027 -0.0446 -0.0062 26 6 3.4954 -1.1538 -0.0011 27 6 4.2129 -2.4790 -0.0022 28 7 2.1763 -1.1397 -0.0006 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6913 2.1441 0.0009 33 1 6.1972 1.4672 -0.0011 34 1 7.1556 5.0537 1.4749 35 1 6.0592 3.7910 2.1174 36 1 10.4577 4.2745 -0.3521 37 1 10.0834 4.7768 1.3551 38 1 13.0235 5.5450 2.1078 39 1 9.4595 1.0521 1.1620 40 1 10.0039 1.5734 -0.4922 41 1 8.2738 4.1872 -1.1832 42 1 7.9414 2.4283 -1.2457 43 1 4.3855 -2.7979 -1.0302 44 1 5.1687 -2.3751 0.5113 45 1 3.6035 -3.2226 0.5113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053955255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:05 Heat of formation + Delta-G solvation = 32.045901 kcal Electronic energy + Delta-G solvation = -28160.807094 eV Core-core repulsion = 24180.773115 eV Total energy + Delta-G solvation = -3980.033979 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65889 -40.27542 -39.07259 -36.21348 -35.11935 -34.25602 -33.78632 -32.08024 -30.55051 -29.63992 -28.57007 -28.15251 -25.73706 -25.33115 -24.85735 -22.60448 -22.20347 -21.27689 -20.67682 -19.02068 -18.65592 -17.48386 -16.68304 -16.52382 -16.00083 -15.84822 -15.36094 -15.26131 -15.04020 -14.83237 -14.51276 -14.04500 -13.82614 -13.76997 -13.49620 -13.35829 -13.12577 -12.90550 -12.77882 -12.64542 -12.61336 -12.00232 -11.52520 -11.47222 -11.38880 -11.30760 -11.09553 -10.90306 -10.85351 -10.67953 -10.41818 -10.32407 -9.78930 -9.75450 -9.65493 -9.52545 -9.32051 -8.78713 -8.68850 -6.84031 -5.74072 -3.04738 0.16016 0.51549 2.45581 2.72138 3.41594 3.42027 3.44087 3.46759 3.49186 3.53030 4.09966 4.21792 4.47325 4.50016 4.51823 4.62138 4.89533 4.97648 5.01998 5.04782 5.12965 5.13872 5.22646 5.24850 5.26516 5.37369 5.45396 5.49298 5.60862 5.60968 5.77965 5.89292 5.97330 5.98455 6.04855 6.32456 6.36171 6.49635 6.51748 6.63066 6.95332 7.22443 7.27913 7.53725 7.63758 7.72064 7.89851 8.01477 9.07876 9.74197 10.62482 11.43946 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.002449 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.703344 B =11432.178507 C =12283.437470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.179 3.821 3 C -0.179 4.179 4 C 0.141 3.859 5 C 0.570 3.430 6 O -0.528 6.528 7 N -0.687 5.687 8 C 0.106 3.894 9 H 0.108 0.892 10 C 0.038 3.962 11 O -0.335 6.335 12 C 0.054 3.946 13 C 0.156 3.844 14 N -0.605 5.605 15 C -0.219 4.219 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.125 3.875 24 C -0.147 4.147 25 N -0.498 5.498 26 C 0.323 3.677 27 C -0.087 4.087 28 N -0.509 5.509 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.600 -9.233 -7.357 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.031 3.969 3 C -0.202 4.202 4 C -0.007 4.007 5 C 0.353 3.647 6 O -0.404 6.404 7 N -0.337 5.337 8 C 0.002 3.998 9 H 0.126 0.874 10 C -0.040 4.040 11 O -0.253 6.253 12 C 0.013 3.987 13 C 0.030 3.970 14 N -0.330 5.330 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.001 4.001 24 C -0.186 4.186 25 N -0.216 5.216 26 C 0.056 3.944 27 C -0.145 4.145 28 N -0.225 5.225 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.252 0.748 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.109 -9.290 -6.965 25.862 hybrid contribution 0.745 0.447 0.218 0.896 sum -22.364 -8.843 -6.747 24.978 Atomic orbital electron populations 1.20819 0.87105 1.04460 1.04006 1.21848 0.97910 0.87608 0.89497 1.22775 0.94588 1.01371 1.01444 1.21636 0.92069 0.92422 0.94567 1.17787 0.82573 0.86981 0.77310 1.90795 1.71369 1.28139 1.50046 1.45818 1.05127 1.10862 1.71912 1.22686 0.92065 0.87051 0.98037 0.87427 1.23947 0.89569 0.96089 0.94402 1.88871 1.33735 1.69731 1.33011 1.23877 0.91093 1.00695 0.83082 1.22600 0.84582 0.92343 0.97426 1.45771 1.27150 1.01529 1.58599 1.18993 0.96800 0.94323 1.24527 0.90207 1.24803 0.98794 0.95347 1.01522 1.69825 1.37188 0.97818 1.51926 0.86119 0.83776 0.77174 0.78857 1.21676 1.21729 1.20555 1.22689 0.87387 0.93593 0.96467 1.23163 0.92432 1.03827 0.99152 1.68203 1.41631 0.98105 1.13631 1.23275 0.86400 0.94617 0.90105 1.20627 1.00311 0.89341 1.04216 1.68077 1.09816 1.30524 1.14073 0.89340 0.89603 0.89700 0.82239 0.74759 0.90936 0.89399 0.94549 0.90775 0.93690 0.93152 0.93696 0.88784 0.89793 0.89313 0.89039 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.22 36.01 0.37 -0.18 16 2 C 0.18 1.61 6.83 -82.24 -0.56 1.04 16 3 C -0.18 -1.78 9.41 -38.90 -0.37 -2.15 16 4 C 0.14 1.67 6.79 -82.64 -0.56 1.11 16 5 C 0.57 7.52 7.83 -12.05 -0.09 7.43 16 6 O -0.53 -7.97 16.07 5.38 0.09 -7.88 16 7 N -0.69 -8.73 5.14 -52.49 -0.27 -9.00 16 8 C 0.11 1.41 3.51 -65.80 -0.23 1.18 16 9 H 0.11 1.36 7.55 -51.93 -0.39 0.96 16 10 C 0.04 0.59 7.42 38.24 0.28 0.87 16 11 O -0.34 -6.63 11.29 -35.23 -0.40 -7.02 16 12 C 0.05 1.01 1.53 -90.28 -0.14 0.87 16 13 C 0.16 3.69 6.81 -3.27 -0.02 3.66 16 14 N -0.60 -15.87 3.70 -181.57 -0.67 -16.55 16 15 C -0.22 -6.31 10.69 -15.06 -0.16 -6.47 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 18 N -0.92 -27.80 11.51 55.49 0.64 -27.16 16 19 Si 0.91 22.57 29.56 -169.99 -5.02 17.54 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.12 2.57 8.34 -3.26 -0.03 2.54 16 24 C -0.15 -2.04 6.12 -25.45 -0.16 -2.19 16 25 N -0.50 -5.79 9.60 -7.32 -0.07 -5.86 16 26 C 0.32 3.37 7.64 -157.30 -1.20 2.17 16 27 C -0.09 -0.62 10.31 36.01 0.37 -0.25 16 28 N -0.51 -5.22 10.25 -7.00 -0.07 -5.29 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.16 1.37 7.74 -52.49 -0.41 0.96 16 33 H 0.42 5.11 8.01 -40.82 -0.33 4.78 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 37 H 0.07 1.98 7.38 -51.93 -0.38 1.59 16 38 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 41 H 0.09 1.21 7.89 -51.93 -0.41 0.80 16 42 H 0.08 1.04 7.81 -51.93 -0.41 0.63 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -35.14 379.33 -9.17 -44.31 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.51 Total: 1.88 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -2.59 Total: 9.31 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.45 Total: -63.85 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.31 Total: -14.91 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.14 -9.17 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053955255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.356 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds