Wall clock time and date at job start Tue Mar 31 2020 16:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38796 * 120.42837 * 2 1 4 4 C 1.39495 * 118.26626 * 180.26354 * 3 2 1 5 5 C 1.48446 * 120.55746 * 179.71864 * 4 3 2 6 6 O 1.21487 * 119.99746 * 359.72358 * 5 4 3 7 7 N 1.34777 * 120.00495 * 179.72285 * 5 4 3 8 8 C 1.46505 * 120.00210 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.76563 * 31.47094 * 8 7 5 10 10 C 1.55056 * 110.86889 * 267.71161 * 8 7 5 11 11 O 1.44607 * 103.66561 * 205.32238 * 10 8 7 12 12 C 1.42829 * 106.74133 * 39.08024 * 11 10 8 13 13 C 1.52650 * 115.96887 * 202.49452 * 12 11 10 14 14 N 1.47222 * 87.78268 * 218.40479 * 13 12 11 15 15 C 1.36937 * 135.96722 * 206.40899 * 14 13 12 16 16 H 1.07997 * 119.99687 * 350.61132 * 15 14 13 17 17 C 1.38810 * 119.99916 * 170.61092 * 15 14 13 18 18 N 1.31618 * 119.99794 * 157.31820 * 17 15 14 19 19 Si 1.86804 * 120.00020 * 337.31591 * 17 15 14 20 20 H 1.48500 * 109.46862 * 90.00049 * 19 17 15 21 21 H 1.48500 * 109.46777 * 210.00095 * 19 17 15 22 22 H 1.48491 * 109.47169 * 330.00249 * 19 17 15 23 23 C 1.47222 * 88.06543 * 26.66831 * 14 13 12 24 24 C 1.53327 * 108.32685 * 334.32125 * 12 11 10 25 25 N 1.33112 * 118.89757 * 359.44576 * 4 3 2 26 26 C 1.31559 * 120.73388 * 0.27478 * 25 4 3 27 27 C 1.50704 * 119.03911 * 180.02562 * 26 25 4 28 28 N 1.31909 * 121.92027 * 0.02562 * 26 25 4 29 29 H 1.09005 * 109.47025 * 270.30085 * 1 2 3 30 30 H 1.09002 * 109.46945 * 30.29538 * 1 2 3 31 31 H 1.08994 * 109.47609 * 150.30029 * 1 2 3 32 32 H 1.08005 * 120.87214 * 0.02562 * 3 2 1 33 33 H 0.96993 * 119.99614 * 359.97438 * 7 5 4 34 34 H 1.09002 * 110.58661 * 323.86355 * 10 8 7 35 35 H 1.09000 * 110.58374 * 86.77970 * 10 8 7 36 36 H 1.08998 * 113.50312 * 103.67510 * 13 12 11 37 37 H 1.09003 * 113.55063 * 333.14249 * 13 12 11 38 38 H 0.96997 * 120.00266 * 3.59850 * 18 17 15 39 39 H 1.09003 * 113.50436 * 88.05945 * 23 14 13 40 40 H 1.09001 * 113.50110 * 218.60341 * 23 14 13 41 41 H 1.09001 * 110.56489 * 120.18153 * 24 12 11 42 42 H 1.09003 * 110.55841 * 243.02579 * 24 12 11 43 43 H 1.08997 * 109.46735 * 89.99868 * 27 26 25 44 44 H 1.09000 * 109.46702 * 209.99968 * 27 26 25 45 45 H 1.08998 * 109.47030 * 330.00037 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1968 0.0000 4 6 3.6039 1.1442 -0.0057 5 6 4.4063 2.3931 -0.0122 6 8 3.8494 3.4728 -0.0177 7 7 5.7526 2.3293 -0.0120 8 6 6.5444 3.5619 -0.0190 9 1 6.0219 4.3598 0.5086 10 6 6.8914 3.9872 -1.4692 11 8 8.0994 4.7673 -1.3166 12 6 8.8876 4.1146 -0.3202 13 6 9.9193 4.9853 0.3923 14 7 10.8302 3.8291 0.3643 15 6 11.8857 3.3888 1.1175 16 1 12.3122 4.0289 1.8756 17 6 12.4072 2.1198 0.9066 18 7 13.6424 1.8472 1.2706 19 14 11.3561 0.7991 0.1064 20 1 11.5371 0.8476 -1.3667 21 1 11.7679 -0.5350 0.6122 22 1 9.9280 1.0349 0.4376 23 6 10.1137 3.3569 -0.8320 24 6 7.9474 3.3204 0.5944 25 7 4.2028 -0.0446 0.0005 26 6 3.4954 -1.1538 0.0063 27 6 4.2129 -2.4790 0.0137 28 7 2.1764 -1.1398 0.0057 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3634 -0.8926 -0.5091 32 1 1.6913 2.1442 0.0004 33 1 6.1972 1.4673 -0.0072 34 1 7.0768 3.1116 -2.0914 35 1 6.0924 4.5966 -1.8914 36 1 9.6200 5.2786 1.3986 37 1 10.2668 5.8272 -0.2066 38 1 14.1707 2.5164 1.7331 39 1 10.5135 3.7563 -1.7641 40 1 9.9785 2.2757 -0.8592 41 1 8.1976 2.2598 0.5724 42 1 7.9908 3.7040 1.6138 43 1 4.3855 -2.7929 1.0431 44 1 3.6034 -3.2250 -0.4963 45 1 5.1687 -2.3776 -0.5004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053955256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:11 Heat of formation + Delta-G solvation = 39.417733 kcal Electronic energy + Delta-G solvation = -28312.223310 eV Core-core repulsion = 24332.508998 eV Total energy + Delta-G solvation = -3979.714312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72144 -40.49468 -39.36494 -36.72348 -35.23268 -34.63669 -33.86266 -32.38232 -30.52834 -29.67920 -28.62964 -28.43623 -25.84122 -25.49123 -25.27015 -22.65193 -21.91496 -21.48694 -20.85711 -19.15391 -18.77250 -17.58782 -17.48238 -16.54952 -16.08249 -15.99950 -15.70902 -15.37589 -15.23434 -15.11909 -14.85806 -14.37251 -13.86679 -13.76581 -13.57268 -13.50338 -13.38648 -12.99250 -12.88660 -12.73972 -12.67439 -12.60927 -11.82756 -11.67333 -11.46430 -11.36840 -11.12331 -10.96320 -10.91717 -10.74239 -10.65710 -10.54356 -9.84823 -9.83344 -9.73349 -9.37345 -9.25547 -8.88535 -8.65086 -7.23396 -6.40925 -3.26011 0.09440 0.46115 2.37104 2.59084 3.35182 3.35317 3.37554 3.40400 3.46756 3.58591 3.96068 4.10803 4.41211 4.46838 4.53197 4.54429 4.75734 4.78798 4.85276 4.88382 4.96738 5.01538 5.08916 5.11928 5.15297 5.20273 5.33580 5.41266 5.43179 5.57460 5.69570 5.71045 5.87711 5.93415 6.08623 6.10786 6.20792 6.27633 6.30799 6.33724 6.42958 6.53218 7.06729 7.14506 7.26674 7.57336 7.78788 8.20705 8.91456 9.46391 10.33530 11.10471 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.003071 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.920279 B = 9116.147818 C =10580.620034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.180 3.820 3 C -0.178 4.178 4 C 0.140 3.860 5 C 0.572 3.428 6 O -0.523 6.523 7 N -0.693 5.693 8 C 0.107 3.893 9 H 0.111 0.889 10 C 0.039 3.961 11 O -0.354 6.354 12 C 0.059 3.941 13 C 0.132 3.868 14 N -0.616 5.616 15 C -0.311 4.311 16 H 0.081 0.919 17 C -0.019 4.019 18 N -0.920 5.920 19 Si 1.064 2.936 20 H -0.293 1.293 21 H -0.295 1.295 22 H -0.286 1.286 23 C 0.094 3.906 24 C -0.123 4.123 25 N -0.500 5.500 26 C 0.324 3.676 27 C -0.087 4.087 28 N -0.507 5.507 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.264 0.736 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.754 -4.951 -3.541 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.032 3.968 3 C -0.201 4.201 4 C -0.008 4.008 5 C 0.356 3.644 6 O -0.398 6.398 7 N -0.345 5.345 8 C 0.002 3.998 9 H 0.129 0.871 10 C -0.039 4.039 11 O -0.271 6.271 12 C 0.018 3.982 13 C 0.006 3.994 14 N -0.346 5.346 15 C -0.437 4.437 16 H 0.098 0.902 17 C -0.219 4.219 18 N -0.561 5.561 19 Si 0.896 3.104 20 H -0.220 1.220 21 H -0.222 1.222 22 H -0.213 1.213 23 C -0.032 4.032 24 C -0.161 4.161 25 N -0.218 5.218 26 C 0.057 3.943 27 C -0.146 4.146 28 N -0.224 5.224 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.323 -6.437 -4.023 27.395 hybrid contribution -0.145 1.847 0.590 1.945 sum -26.468 -4.590 -3.433 27.081 Atomic orbital electron populations 1.20825 0.87042 1.04472 1.04074 1.21864 0.97948 0.87580 0.89380 1.22777 0.94532 1.01424 1.01382 1.21589 0.92069 0.92332 0.94797 1.17797 0.82461 0.87067 0.77114 1.90808 1.71296 1.28137 1.49570 1.45823 1.05410 1.10620 1.72610 1.22825 0.92164 0.87082 0.97705 0.87100 1.23887 0.88106 0.96394 0.95503 1.88809 1.30495 1.48844 1.58924 1.23618 0.90324 0.95385 0.88910 1.22432 0.87271 0.92129 0.97587 1.45586 1.37288 1.24446 1.27272 1.19927 1.06573 0.99835 1.17328 0.90175 1.25741 0.97414 0.97284 1.01458 1.70919 1.05499 1.39559 1.40076 0.83782 0.74817 0.76081 0.75683 1.22034 1.22215 1.21336 1.23097 0.89818 0.97874 0.92396 1.22718 0.90806 1.02420 1.00172 1.68200 1.41685 0.98138 1.13767 1.23286 0.86411 0.94589 0.89999 1.20641 1.00249 0.89302 1.04377 1.68088 1.09778 1.30510 1.13975 0.89276 0.89682 0.89573 0.82184 0.74764 0.91846 0.88661 0.93026 0.93237 0.92610 0.93141 0.93412 0.89111 0.88962 0.89185 0.89337 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.22 36.01 0.37 -0.15 16 2 C 0.18 1.56 6.83 -82.23 -0.56 1.00 16 3 C -0.18 -1.71 9.41 -38.91 -0.37 -2.07 16 4 C 0.14 1.60 6.79 -82.64 -0.56 1.04 16 5 C 0.57 7.29 7.83 -12.05 -0.09 7.20 16 6 O -0.52 -7.70 16.07 5.38 0.09 -7.61 16 7 N -0.69 -8.54 5.18 -52.47 -0.27 -8.81 16 8 C 0.11 1.44 3.51 -65.77 -0.23 1.21 16 9 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16 10 C 0.04 0.54 7.42 38.24 0.28 0.83 16 11 O -0.35 -6.00 11.32 -35.23 -0.40 -6.40 16 12 C 0.06 1.07 1.66 -90.66 -0.15 0.92 16 13 C 0.13 2.69 8.20 -8.04 -0.07 2.62 16 14 N -0.62 -15.15 3.53 -184.60 -0.65 -15.80 16 15 C -0.31 -8.85 10.96 -15.06 -0.17 -9.02 16 16 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 17 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 18 N -0.92 -28.60 13.70 55.49 0.76 -27.84 16 19 Si 1.06 26.05 25.33 -169.99 -4.31 21.74 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -6.28 5.50 56.52 0.31 -5.97 16 23 C 0.09 2.03 6.69 -7.88 -0.05 1.98 16 24 C -0.12 -1.94 6.20 -25.49 -0.16 -2.10 16 25 N -0.50 -5.66 9.60 -7.32 -0.07 -5.73 16 26 C 0.32 3.31 7.64 -157.30 -1.20 2.11 16 27 C -0.09 -0.62 10.31 36.01 0.37 -0.25 16 28 N -0.51 -5.07 10.25 -7.00 -0.07 -5.14 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.16 1.31 7.74 -52.48 -0.41 0.90 16 33 H 0.42 4.84 7.79 -40.82 -0.32 4.52 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.99 7.91 -51.93 -0.41 0.57 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.04 3.52 -51.93 -0.18 0.86 16 41 H 0.09 1.49 6.42 -51.93 -0.33 1.16 16 42 H 0.09 1.43 7.82 -51.93 -0.41 1.02 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -33.93 370.76 -8.36 -42.29 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.34 Total: 3.05 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.68 Total: 4.67 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.30 Total: -63.33 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.31 Total: -14.01 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.31 Total: 21.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.93 -8.36 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053955256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.703 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds