Wall clock time and date at job start Tue Mar 31 2020 16:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32167 * 120.53528 * 2 1 4 4 C 1.31858 * 120.96364 * 180.02562 * 3 2 1 5 5 N 1.31886 * 122.09750 * 359.97438 * 4 3 2 6 6 C 1.32135 * 120.96460 * 359.71346 * 5 4 3 7 7 C 1.39919 * 120.53818 * 180.02562 * 2 1 3 8 8 C 1.47841 * 120.93905 * 359.97438 * 7 2 1 9 9 O 1.21552 * 119.99678 * 306.57371 * 8 7 2 10 10 N 1.34774 * 119.99518 * 126.57465 * 8 7 2 11 11 C 1.46831 * 120.41179 * 354.12440 * 10 8 7 12 12 C 1.53369 * 109.24889 * 232.21574 * 11 10 8 13 13 C 1.52786 * 108.81219 * 306.16748 * 12 11 10 14 14 H 1.08992 * 109.34075 * 303.34387 * 13 12 11 15 15 O 1.42598 * 111.11593 * 182.55349 * 13 12 11 16 16 C 1.43151 * 113.63224 * 176.38941 * 15 13 12 17 17 C 1.53192 * 109.69321 * 61.71809 * 16 15 13 18 18 N 1.47328 * 108.81081 * 308.70291 * 17 16 15 19 19 C 1.36943 * 121.34246 * 230.30617 * 18 17 16 20 20 H 1.08004 * 119.99579 * 145.05032 * 19 18 17 21 21 C 1.38811 * 120.00109 * 325.05586 * 19 18 17 22 22 N 1.31617 * 119.99971 * 4.35317 * 21 19 18 23 23 Si 1.86797 * 120.00134 * 184.34949 * 21 19 18 24 24 H 1.48509 * 109.46894 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47269 * 119.99850 * 23 21 19 26 26 H 1.48498 * 109.47137 * 240.00208 * 23 21 19 27 27 C 1.46870 * 117.35598 * 50.32886 * 18 17 16 28 28 H 1.08998 * 110.21119 * 67.95418 * 27 18 17 29 29 C 1.47131 * 120.40301 * 174.09619 * 10 8 7 30 30 H 1.08998 * 109.47359 * 274.84870 * 1 2 3 31 31 H 1.09003 * 109.47008 * 34.84606 * 1 2 3 32 32 H 1.08997 * 109.47452 * 154.84010 * 1 2 3 33 33 H 1.08000 * 118.94709 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.53831 * 180.30764 * 6 5 4 35 35 H 1.08992 * 109.51385 * 112.28384 * 11 10 8 36 36 H 1.09005 * 109.54317 * 352.17009 * 11 10 8 37 37 H 1.09006 * 109.58351 * 186.36725 * 12 11 10 38 38 H 1.09006 * 109.58015 * 65.96764 * 12 11 10 39 39 H 1.09004 * 109.42555 * 181.77181 * 16 15 13 40 40 H 1.08996 * 109.42502 * 301.65980 * 16 15 13 41 41 H 1.09001 * 109.58567 * 68.55302 * 17 16 15 42 42 H 1.09005 * 109.58224 * 188.95706 * 17 16 15 43 43 H 0.97003 * 120.00180 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.73371 * 246.46546 * 29 10 8 45 45 H 1.09003 * 109.72681 * 7.09568 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1482 -0.0005 5 7 4.2062 0.0362 -0.0005 6 6 3.6164 -1.1462 0.0056 7 6 2.2179 -1.2051 -0.0005 8 6 1.5120 -2.5041 -0.0006 9 8 0.6710 -2.7387 0.8451 10 7 1.8010 -3.4280 -0.9383 11 6 2.7193 -3.1083 -2.0385 12 6 2.0479 -3.4526 -3.3737 13 6 1.5787 -4.9060 -3.3289 14 1 2.4278 -5.5527 -3.1082 15 8 0.9976 -5.2967 -4.5712 16 6 0.6130 -6.6748 -4.6165 17 6 -0.4528 -6.9486 -3.5507 18 7 0.0292 -6.4393 -2.2550 19 6 0.0082 -7.2202 -1.1302 20 1 0.7935 -7.1285 -0.3945 21 6 -1.0224 -8.1295 -0.9358 22 7 -1.9323 -8.3028 -1.8709 23 14 -1.1180 -9.1072 0.6530 24 1 0.0161 -8.7308 1.5348 25 1 -2.4001 -8.8102 1.3407 26 1 -1.0453 -10.5584 0.3463 27 6 0.5330 -5.0602 -2.2172 28 1 -0.2831 -4.3565 -2.3812 29 6 1.2006 -4.7696 -0.8717 30 1 -0.3634 0.0869 1.0240 31 1 -0.3633 0.8434 -0.5872 32 1 -0.3634 -0.9301 -0.4369 33 1 4.0127 2.0972 -0.0001 34 1 4.2039 -2.0524 0.0105 35 1 3.6340 -3.6910 -1.9302 36 1 2.9600 -2.0454 -2.0154 37 1 2.7633 -3.3245 -4.1861 38 1 1.1915 -2.7970 -3.5317 39 1 0.2081 -6.9060 -5.6018 40 1 1.4848 -7.3009 -4.4268 41 1 -1.3790 -6.4419 -3.8215 42 1 -0.6291 -8.0219 -3.4776 43 1 -2.6527 -8.9380 -1.7349 44 1 1.9761 -5.5106 -0.6780 45 1 0.4557 -4.8002 -0.0764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074180941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:51 Heat of formation + Delta-G solvation = 6.627103 kcal Electronic energy + Delta-G solvation = -29842.960827 eV Core-core repulsion = 25861.824606 eV Total energy + Delta-G solvation = -3981.136221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59662 -39.96791 -38.55927 -36.24256 -34.76260 -34.66636 -33.13277 -31.71262 -31.46845 -29.95293 -28.90719 -27.17130 -25.98019 -24.59839 -24.02950 -23.19126 -22.13836 -21.54408 -19.85711 -19.45043 -18.16929 -17.41604 -17.09070 -16.90577 -16.07058 -15.59405 -15.41574 -15.10242 -14.95171 -14.53020 -14.16073 -14.14831 -13.77661 -13.67938 -13.32101 -13.21417 -13.13479 -12.92962 -12.73500 -12.64584 -12.43868 -11.96861 -11.80768 -11.38972 -11.15131 -10.98320 -10.93557 -10.79944 -10.64932 -10.31258 -10.23919 -10.13741 -9.98730 -9.71316 -9.62128 -9.58021 -9.01391 -8.61053 -8.48959 -6.68689 -5.91006 -3.45546 0.31834 0.71348 2.53609 2.89995 3.31289 3.40145 3.40769 3.42419 3.71652 3.80709 4.07795 4.14808 4.30484 4.36590 4.67644 4.74328 4.96783 5.08249 5.20467 5.23336 5.26555 5.34744 5.41416 5.42347 5.53844 5.60268 5.67995 5.77810 5.79697 5.85733 6.05177 6.06192 6.08081 6.19055 6.30260 6.40063 6.53221 6.55208 6.63074 6.80048 7.13237 7.36836 7.55296 7.66145 7.71048 7.86702 8.07885 8.33642 9.06541 9.65479 10.26770 11.15459 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.003843 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.369908 B = 7283.741871 C = 8346.902872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.224 3.776 3 N -0.522 5.522 4 C 0.309 3.691 5 N -0.525 5.525 6 C 0.183 3.817 7 C -0.229 4.229 8 C 0.567 3.433 9 O -0.519 6.519 10 N -0.601 5.601 11 C 0.110 3.890 12 C -0.123 4.123 13 C 0.077 3.923 14 H 0.052 0.948 15 O -0.390 6.390 16 C 0.037 3.963 17 C 0.140 3.860 18 N -0.588 5.588 19 C -0.263 4.263 20 H 0.070 0.930 21 C 0.016 3.984 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.289 1.289 27 C 0.138 3.862 28 H 0.037 0.963 29 C 0.124 3.876 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.200 0.800 34 H 0.174 0.826 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.105 0.895 43 H 0.256 0.744 44 H 0.076 0.924 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.651 14.000 -1.253 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 N -0.236 5.236 4 C 0.022 3.978 5 N -0.239 5.239 6 C 0.016 3.984 7 C -0.237 4.237 8 C 0.352 3.648 9 O -0.394 6.394 10 N -0.335 5.335 11 C -0.014 4.014 12 C -0.162 4.162 13 C 0.017 3.983 14 H 0.070 0.930 15 O -0.309 6.309 16 C -0.041 4.041 17 C 0.015 3.985 18 N -0.313 5.313 19 C -0.392 4.392 20 H 0.087 0.913 21 C -0.183 4.183 22 N -0.543 5.543 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.216 1.216 27 C 0.030 3.970 28 H 0.055 0.945 29 C 0.003 3.997 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.217 0.783 34 H 0.191 0.809 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.123 0.877 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.482 14.722 -0.933 18.097 hybrid contribution -0.428 -1.538 0.878 1.822 sum 10.054 13.184 -0.055 16.580 Atomic orbital electron populations 1.20894 0.86890 1.04403 1.04598 1.21872 0.97908 0.86546 0.85911 1.68366 1.10307 1.29595 1.15334 1.25164 0.86736 0.97247 0.88699 1.68468 1.41340 0.98896 1.15196 1.23478 0.90525 0.96751 0.87622 1.21701 0.96670 0.96362 1.08967 1.17800 0.82286 0.82693 0.81993 1.90842 1.32047 1.78686 1.37866 1.48233 1.46070 1.13958 1.25213 1.21788 0.92612 1.00955 0.86013 1.21829 1.01311 0.96665 0.96393 1.22409 0.95677 0.93954 0.86291 0.92965 1.87739 1.81191 1.27908 1.34039 1.23403 0.98798 0.81273 1.00603 1.21581 0.92139 1.02119 0.82677 1.43936 1.74740 1.06632 1.06006 1.19100 1.04722 1.16755 0.98585 0.91258 1.25328 0.95261 1.00290 0.97452 1.69901 1.15010 1.37103 1.32283 0.86228 0.77921 0.79238 0.83487 1.20036 1.21287 1.21564 1.21304 0.94293 0.89427 0.92006 0.94516 1.21866 0.98465 0.79438 0.99934 0.88654 0.89631 0.89590 0.78318 0.80927 0.90680 0.90232 0.90095 0.90832 0.90135 0.94189 0.95625 0.87730 0.93334 0.90573 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.54 36.01 0.34 -0.90 16 2 C 0.22 2.73 6.86 -81.82 -0.56 2.16 16 3 N -0.52 -5.91 10.36 -10.48 -0.11 -6.02 16 4 C 0.31 2.97 12.27 -92.02 -1.13 1.84 16 5 N -0.53 -5.49 10.42 -14.24 -0.15 -5.64 16 6 C 0.18 1.92 9.12 -16.77 -0.15 1.77 16 7 C -0.23 -2.85 4.60 -104.69 -0.48 -3.33 16 8 C 0.57 8.57 6.20 -12.33 -0.08 8.50 16 9 O -0.52 -9.71 15.45 5.32 0.08 -9.63 16 10 N -0.60 -8.79 2.98 -173.81 -0.52 -9.31 16 11 C 0.11 1.25 5.57 -3.67 -0.02 1.23 16 12 C -0.12 -1.63 5.82 -26.65 -0.16 -1.78 16 13 C 0.08 1.32 2.48 -26.63 -0.07 1.26 16 14 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 15 O -0.39 -7.46 10.49 -35.23 -0.37 -7.83 16 16 C 0.04 0.71 6.96 37.26 0.26 0.97 16 17 C 0.14 3.26 5.38 -3.49 -0.02 3.24 16 18 N -0.59 -14.11 3.04 -164.37 -0.50 -14.61 16 19 C -0.26 -6.77 8.71 -15.06 -0.13 -6.90 16 20 H 0.07 1.74 6.43 -52.48 -0.34 1.40 16 21 C 0.02 0.44 5.34 -17.43 -0.09 0.35 16 22 N -0.90 -25.00 10.70 55.49 0.59 -24.41 16 23 Si 0.90 21.06 29.56 -169.99 -5.02 16.03 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.14 2.79 3.03 -67.52 -0.20 2.59 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 C 0.12 2.26 4.58 -3.70 -0.02 2.25 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.10 6.69 -51.93 -0.35 0.75 16 33 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.17 1.45 7.80 -52.49 -0.41 1.04 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.78 5.42 -51.93 -0.28 0.50 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 2.67 6.16 -51.93 -0.32 2.35 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.08 1.38 7.34 -51.93 -0.38 1.00 16 45 H 0.11 2.24 6.81 -51.93 -0.35 1.88 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -31.11 355.21 -9.36 -40.47 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.22 Total: 2.36 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -2.50 Total: 13.23 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.68 Total: -59.99 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.29 Total: -17.47 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.11 -9.36 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074180941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.101 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds