Wall clock time and date at job start Tue Mar 31 2020 16:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32167 * 120.53528 * 2 1 4 4 C 1.31858 * 120.96364 * 180.02562 * 3 2 1 5 5 N 1.31886 * 122.09750 * 359.97438 * 4 3 2 6 6 C 1.32135 * 120.96460 * 359.71346 * 5 4 3 7 7 C 1.39919 * 120.53818 * 180.02562 * 2 1 3 8 8 C 1.47841 * 120.93905 * 359.97438 * 7 2 1 9 9 O 1.21552 * 119.99678 * 306.57371 * 8 7 2 10 10 N 1.34774 * 119.99518 * 126.57465 * 8 7 2 11 11 C 1.46831 * 120.41179 * 354.12440 * 10 8 7 12 12 C 1.53369 * 109.24889 * 232.21574 * 11 10 8 13 13 C 1.52786 * 108.81219 * 306.16748 * 12 11 10 14 14 H 1.08992 * 109.34075 * 303.34387 * 13 12 11 15 15 O 1.42598 * 111.11593 * 182.55349 * 13 12 11 16 16 C 1.43151 * 113.63224 * 176.38941 * 15 13 12 17 17 C 1.53192 * 109.69321 * 61.71809 * 16 15 13 18 18 N 1.47328 * 108.81081 * 308.70291 * 17 16 15 19 19 C 1.36943 * 121.34246 * 230.30617 * 18 17 16 20 20 H 1.08004 * 119.99579 * 145.05032 * 19 18 17 21 21 C 1.38811 * 120.00109 * 325.05586 * 19 18 17 22 22 N 1.31617 * 119.99971 * 4.35317 * 21 19 18 23 23 Si 1.86797 * 120.00134 * 184.34949 * 21 19 18 24 24 H 1.48509 * 109.46894 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47269 * 119.99850 * 23 21 19 26 26 H 1.48498 * 109.47137 * 240.00208 * 23 21 19 27 27 C 1.46870 * 117.35598 * 50.32886 * 18 17 16 28 28 H 1.08998 * 110.21119 * 67.95418 * 27 18 17 29 29 C 1.47131 * 120.40301 * 174.09619 * 10 8 7 30 30 H 1.08998 * 109.47359 * 274.84870 * 1 2 3 31 31 H 1.09003 * 109.47008 * 34.84606 * 1 2 3 32 32 H 1.08997 * 109.47452 * 154.84010 * 1 2 3 33 33 H 1.08000 * 118.94709 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.53831 * 180.30764 * 6 5 4 35 35 H 1.08992 * 109.51385 * 112.28384 * 11 10 8 36 36 H 1.09005 * 109.54317 * 352.17009 * 11 10 8 37 37 H 1.09006 * 109.58351 * 186.36725 * 12 11 10 38 38 H 1.09006 * 109.58015 * 65.96764 * 12 11 10 39 39 H 1.09004 * 109.42555 * 181.77181 * 16 15 13 40 40 H 1.08996 * 109.42502 * 301.65980 * 16 15 13 41 41 H 1.09001 * 109.58567 * 68.55302 * 17 16 15 42 42 H 1.09005 * 109.58224 * 188.95706 * 17 16 15 43 43 H 0.97003 * 120.00180 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.73371 * 246.46546 * 29 10 8 45 45 H 1.09003 * 109.72681 * 7.09568 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1384 0.0000 4 6 3.4970 1.1482 -0.0005 5 7 4.2062 0.0362 -0.0005 6 6 3.6164 -1.1462 0.0056 7 6 2.2179 -1.2051 -0.0005 8 6 1.5120 -2.5041 -0.0006 9 8 0.6710 -2.7387 0.8451 10 7 1.8010 -3.4280 -0.9383 11 6 2.7193 -3.1083 -2.0385 12 6 2.0479 -3.4526 -3.3737 13 6 1.5787 -4.9060 -3.3289 14 1 2.4278 -5.5527 -3.1082 15 8 0.9976 -5.2967 -4.5712 16 6 0.6130 -6.6748 -4.6165 17 6 -0.4528 -6.9486 -3.5507 18 7 0.0292 -6.4393 -2.2550 19 6 0.0082 -7.2202 -1.1302 20 1 0.7935 -7.1285 -0.3945 21 6 -1.0224 -8.1295 -0.9358 22 7 -1.9323 -8.3028 -1.8709 23 14 -1.1180 -9.1072 0.6530 24 1 0.0161 -8.7308 1.5348 25 1 -2.4001 -8.8102 1.3407 26 1 -1.0453 -10.5584 0.3463 27 6 0.5330 -5.0602 -2.2172 28 1 -0.2831 -4.3565 -2.3812 29 6 1.2006 -4.7696 -0.8717 30 1 -0.3634 0.0869 1.0240 31 1 -0.3633 0.8434 -0.5872 32 1 -0.3634 -0.9301 -0.4369 33 1 4.0127 2.0972 -0.0001 34 1 4.2039 -2.0524 0.0105 35 1 3.6340 -3.6910 -1.9302 36 1 2.9600 -2.0454 -2.0154 37 1 2.7633 -3.3245 -4.1861 38 1 1.1915 -2.7970 -3.5317 39 1 0.2081 -6.9060 -5.6018 40 1 1.4848 -7.3009 -4.4268 41 1 -1.3790 -6.4419 -3.8215 42 1 -0.6291 -8.0219 -3.4776 43 1 -2.6527 -8.9380 -1.7349 44 1 1.9761 -5.5106 -0.6780 45 1 0.4557 -4.8002 -0.0764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074180941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:50 Heat of formation + Delta-G solvation = -14.037983 kcal Electronic energy + Delta-G solvation = -29843.856932 eV Core-core repulsion = 25861.824606 eV Total energy + Delta-G solvation = -3982.032326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.52408 -41.22702 -39.96579 -37.56267 -36.53607 -35.52308 -34.21911 -33.26592 -32.93227 -31.43252 -29.89335 -28.86776 -27.22148 -25.88452 -25.42606 -24.14011 -23.60593 -22.92064 -21.51009 -20.67541 -19.10320 -18.75634 -18.44967 -17.85543 -17.45759 -17.10392 -16.93031 -16.47268 -16.15671 -15.96723 -15.63131 -15.39692 -15.11709 -14.83938 -14.68948 -14.65522 -14.24939 -14.12963 -13.97332 -13.91146 -13.42152 -13.32750 -12.99789 -12.93807 -12.75279 -12.69402 -12.43530 -12.32399 -12.04627 -11.96771 -11.81654 -11.64741 -11.30074 -11.11529 -10.67998 -10.60223 -10.56219 -10.42478 -9.81678 -8.63822 -7.92920 -5.50043 -0.54001 -0.13245 1.38142 1.42624 1.46711 1.54698 1.72446 2.43824 2.58356 2.79922 2.90559 3.06725 3.23211 3.24327 3.28212 3.43276 3.76835 3.81553 3.87708 4.01913 4.18372 4.19492 4.27101 4.35349 4.38880 4.41213 4.52808 4.53708 4.56709 4.60570 4.68842 4.77500 4.85716 4.93392 4.97971 5.06988 5.13610 5.23752 5.25457 5.38283 5.60445 5.63003 5.74567 6.19830 6.27966 6.38279 6.88914 6.91071 7.06868 7.70210 8.29031 9.11734 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.003843 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.369908 B = 7283.741871 C = 8346.902872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.217 3.783 3 N -0.532 5.532 4 C 0.315 3.685 5 N -0.528 5.528 6 C 0.196 3.804 7 C -0.244 4.244 8 C 0.570 3.430 9 O -0.565 6.565 10 N -0.599 5.599 11 C 0.110 3.890 12 C -0.116 4.116 13 C 0.080 3.920 14 H 0.061 0.939 15 O -0.394 6.394 16 C 0.050 3.950 17 C 0.144 3.856 18 N -0.606 5.606 19 C -0.263 4.263 20 H 0.076 0.924 21 C -0.038 4.038 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.286 1.286 27 C 0.135 3.865 28 H 0.005 0.995 29 C 0.140 3.860 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.237 0.763 34 H 0.198 0.802 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.050 0.950 41 H -0.007 1.007 42 H 0.079 0.921 43 H 0.252 0.748 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.121 15.786 -1.610 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 N -0.246 5.246 4 C 0.029 3.971 5 N -0.242 5.242 6 C 0.029 3.971 7 C -0.252 4.252 8 C 0.358 3.642 9 O -0.444 6.444 10 N -0.331 5.331 11 C -0.011 4.011 12 C -0.154 4.154 13 C 0.021 3.979 14 H 0.079 0.921 15 O -0.313 6.313 16 C -0.027 4.027 17 C 0.019 3.981 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.094 0.906 21 C -0.234 4.234 22 N -0.577 5.577 23 Si 0.789 3.211 24 H -0.189 1.189 25 H -0.223 1.223 26 H -0.213 1.213 27 C 0.028 3.972 28 H 0.022 0.978 29 C 0.017 3.983 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.214 0.786 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.068 0.932 41 H 0.011 0.989 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.003 16.547 -1.314 21.716 hybrid contribution -1.504 -1.981 0.989 2.677 sum 12.499 14.566 -0.325 19.196 Atomic orbital electron populations 1.20844 0.87134 1.03913 1.04653 1.21946 0.98123 0.86967 0.85835 1.68449 1.11219 1.28887 1.16085 1.25965 0.86245 0.98490 0.86380 1.68614 1.41096 0.98962 1.15512 1.23831 0.89570 0.97823 0.85896 1.21421 0.97489 0.94570 1.11687 1.18192 0.81556 0.83392 0.81099 1.90817 1.34204 1.79638 1.39728 1.48217 1.46222 1.12435 1.26200 1.22078 0.92458 1.03027 0.83561 1.21852 1.01812 0.93121 0.98619 1.22503 0.94309 0.96932 0.84172 0.92117 1.87747 1.81197 1.27599 1.34777 1.23221 0.97629 0.81757 1.00140 1.21393 0.92554 1.00071 0.84080 1.44200 1.74865 1.08164 1.05908 1.19419 1.04556 1.16242 0.98996 0.90609 1.26029 0.95394 1.01971 1.00025 1.70071 1.15713 1.38108 1.33766 0.85292 0.77518 0.77958 0.80282 1.18858 1.22325 1.21260 1.21431 0.94375 0.86676 0.94761 0.97753 1.21395 0.97678 0.81796 0.97420 0.88763 0.87945 0.91768 0.74678 0.78567 0.87536 0.87837 0.86841 0.91933 0.87639 0.93194 0.98902 0.90292 0.93898 0.89996 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 9.54 71.24 0.68 -1.77 16 2 C 0.22 4.99 6.86 42.92 0.29 5.29 16 3 N -0.53 -10.71 10.36 -187.06 -1.94 -12.65 16 4 C 0.32 4.90 12.27 180.84 2.22 7.12 16 5 N -0.53 -8.98 10.42 -198.96 -2.07 -11.06 16 6 C 0.20 3.45 9.12 85.07 0.78 4.23 16 7 C -0.24 -5.63 4.60 -19.91 -0.09 -5.72 16 8 C 0.57 17.09 6.20 86.79 0.54 17.63 16 9 O -0.56 -21.99 15.45 -3.88 -0.06 -22.05 16 10 N -0.60 -16.90 2.98 -822.09 -2.45 -19.35 16 11 C 0.11 2.13 5.57 86.44 0.48 2.61 16 12 C -0.12 -2.71 5.82 30.65 0.18 -2.53 16 13 C 0.08 2.65 2.48 30.66 0.08 2.72 16 14 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 15 O -0.39 -14.51 10.49 -148.98 -1.56 -16.07 16 16 C 0.05 1.89 6.96 72.05 0.50 2.39 16 17 C 0.14 6.98 5.38 86.29 0.46 7.44 16 18 N -0.61 -29.98 3.04 -673.95 -2.05 -32.03 16 19 C -0.26 -13.89 8.71 84.03 0.73 -13.16 16 20 H 0.08 3.84 6.43 -2.91 -0.02 3.82 16 21 C -0.04 -2.08 5.34 84.86 0.45 -1.63 16 22 N -0.93 -54.05 10.70 21.65 0.23 -53.82 16 23 Si 0.96 44.41 29.56 68.60 2.03 46.43 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 27 C 0.13 5.58 3.03 45.05 0.14 5.71 16 28 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 29 C 0.14 5.17 4.58 86.26 0.40 5.57 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.72 6.69 -2.39 -0.02 1.70 16 33 H 0.24 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.20 2.43 7.80 -2.91 -0.02 2.41 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.60 5.42 -2.38 -0.01 1.58 16 37 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.08 4.21 6.16 -2.38 -0.01 4.20 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.08 2.92 7.34 -2.39 -0.02 2.90 16 45 H 0.07 3.04 6.81 -2.39 -0.02 3.03 16 Total: -1.00 -71.46 355.21 0.97 -70.49 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.01 Total: 14.20 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 7.83 Total: 35.90 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -8.28 Total: -128.90 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.62 Total: -38.12 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.46 0.97 -70.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074180941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.452 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds