Wall clock time and date at job start Tue Mar 31 2020 16:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32159 * 120.53917 * 2 1 4 4 C 1.31856 * 120.96558 * 180.26878 * 3 2 1 5 5 N 1.31882 * 122.09875 * 359.74584 * 4 3 2 6 6 C 1.32136 * 120.96371 * 359.97438 * 5 4 3 7 7 C 1.39938 * 120.53612 * 179.73740 * 2 1 3 8 8 C 1.47831 * 120.93965 * 359.97438 * 7 2 1 9 9 O 1.21549 * 119.99933 * 311.03283 * 8 7 2 10 10 N 1.34777 * 119.99970 * 131.02391 * 8 7 2 11 11 C 1.46983 * 120.72011 * 354.63620 * 10 8 7 12 12 C 1.51063 * 108.67199 * 234.00304 * 11 10 8 13 13 C 1.52511 * 110.93173 * 306.36965 * 12 11 10 14 14 H 1.09005 * 108.39551 * 178.24454 * 13 12 11 15 15 O 1.42684 * 110.62494 * 297.61560 * 13 12 11 16 16 C 1.43078 * 113.87003 * 185.35488 * 15 13 12 17 17 C 1.53236 * 109.44239 * 298.34573 * 16 15 13 18 18 N 1.47172 * 108.69205 * 51.59231 * 17 16 15 19 19 C 1.36938 * 121.21790 * 129.03120 * 18 17 16 20 20 H 1.07998 * 119.99630 * 208.66821 * 19 18 17 21 21 C 1.38808 * 120.00444 * 28.67127 * 19 18 17 22 22 N 1.31622 * 120.00117 * 10.57300 * 21 19 18 23 23 Si 1.86805 * 120.00122 * 190.56537 * 21 19 18 24 24 H 1.48496 * 109.46707 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46788 * 120.00092 * 23 21 19 26 26 H 1.48493 * 109.47246 * 240.00371 * 23 21 19 27 27 C 1.47588 * 117.55382 * 309.04750 * 18 17 16 28 28 H 1.09002 * 110.31422 * 172.29456 * 27 18 17 29 29 C 1.46791 * 120.72262 * 174.64958 * 10 8 7 30 30 H 1.09004 * 109.47212 * 273.76059 * 1 2 3 31 31 H 1.08994 * 109.46864 * 33.76193 * 1 2 3 32 32 H 1.09000 * 109.46898 * 153.76221 * 1 2 3 33 33 H 1.08002 * 118.94644 * 179.72335 * 4 3 2 34 34 H 1.08003 * 120.53094 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.64448 * 354.24936 * 11 10 8 36 36 H 1.08998 * 109.64064 * 114.66859 * 11 10 8 37 37 H 1.09004 * 109.70741 * 185.36668 * 12 11 10 38 38 H 1.08996 * 107.97608 * 66.25949 * 12 11 10 39 39 H 1.08994 * 109.47846 * 58.33763 * 16 15 13 40 40 H 1.09001 * 109.47347 * 178.35902 * 16 15 13 41 41 H 1.09005 * 109.59954 * 291.82920 * 17 16 15 42 42 H 1.08999 * 109.59758 * 171.35497 * 17 16 15 43 43 H 0.96994 * 120.00192 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.52280 * 5.78452 * 29 10 8 45 45 H 1.08999 * 109.53018 * 245.58826 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4971 1.1481 -0.0053 5 7 4.2062 0.0361 -0.0059 6 6 3.6164 -1.1463 -0.0006 7 6 2.2180 -1.2053 0.0055 8 6 1.5121 -2.5041 0.0120 9 8 0.6150 -2.7043 0.8074 10 7 1.8631 -3.4663 -0.8641 11 6 2.8631 -3.2023 -1.9084 12 6 2.2665 -3.5573 -3.2501 13 6 1.7272 -4.9838 -3.2463 14 1 1.2800 -5.1851 -4.2199 15 8 2.7807 -5.9188 -3.0186 16 6 2.3732 -7.2865 -3.1214 17 6 1.3099 -7.5832 -2.0586 18 7 0.2479 -6.5692 -2.1579 19 6 -1.0708 -6.9284 -2.2422 20 1 -1.7727 -6.2892 -2.7571 21 6 -1.5054 -8.1141 -1.6660 22 7 -0.7071 -8.7883 -0.8657 23 14 -3.2235 -8.7529 -2.0262 24 1 -3.9157 -7.8179 -2.9492 25 1 -3.1307 -10.0935 -2.6581 26 1 -3.9895 -8.8552 -0.7583 27 6 0.6565 -5.1510 -2.1636 28 1 -0.2000 -4.5113 -2.3768 29 6 1.2547 -4.8005 -0.7962 30 1 -0.3634 0.0674 1.0255 31 1 -0.3633 0.8543 -0.5711 32 1 -0.3633 -0.9218 -0.4543 33 1 4.0127 2.0970 -0.0097 34 1 4.2039 -2.0525 -0.0006 35 1 3.1413 -2.1486 -1.8914 36 1 3.7460 -3.8172 -1.7339 37 1 3.0246 -3.4585 -4.0271 38 1 1.4512 -2.8621 -3.4502 39 1 1.9571 -7.4683 -4.1123 40 1 3.2349 -7.9352 -2.9643 41 1 1.7623 -7.5431 -1.0676 42 1 0.8875 -8.5732 -2.2304 43 1 -1.0106 -9.6170 -0.4633 44 1 0.4672 -4.8039 -0.0426 45 1 2.0157 -5.5350 -0.5326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074180943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:56 Heat of formation + Delta-G solvation = 8.049140 kcal Electronic energy + Delta-G solvation = -29946.276190 eV Core-core repulsion = 25965.201634 eV Total energy + Delta-G solvation = -3981.074557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55836 -39.98666 -38.55328 -36.03218 -34.71058 -34.60535 -33.06730 -31.77531 -31.54661 -29.71313 -28.86668 -27.45644 -25.92762 -24.37349 -23.97946 -23.17588 -22.72105 -21.57813 -20.05577 -18.50336 -18.12995 -17.30353 -17.03925 -16.94421 -16.07887 -15.52889 -15.40298 -15.15717 -14.97754 -14.52533 -14.24154 -14.05747 -13.92040 -13.68598 -13.32385 -13.22657 -13.14731 -12.76701 -12.56332 -12.44270 -12.38651 -12.10401 -11.76809 -11.37478 -11.11772 -11.05627 -10.87656 -10.77994 -10.62186 -10.27572 -10.25751 -10.10767 -9.88980 -9.71537 -9.57574 -9.53281 -9.04627 -8.68507 -8.39392 -6.79480 -5.90874 -3.39926 0.35139 0.75357 2.65558 3.01730 3.30462 3.38363 3.39977 3.48071 3.75486 3.85066 4.12777 4.23277 4.34933 4.37297 4.71682 4.83008 5.00565 5.09062 5.21710 5.25677 5.28372 5.33777 5.45129 5.54539 5.57536 5.67962 5.69289 5.81937 5.89288 5.96583 6.00218 6.09572 6.10124 6.22792 6.29250 6.37221 6.52499 6.60171 6.67094 6.82190 7.05142 7.46321 7.51913 7.65358 7.75005 7.83124 8.18105 8.27734 9.04063 9.63783 10.21517 11.15888 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.003639 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.341678 B = 7692.469004 C = 8648.513936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.224 3.776 3 N -0.523 5.523 4 C 0.308 3.692 5 N -0.526 5.526 6 C 0.183 3.817 7 C -0.229 4.229 8 C 0.563 3.437 9 O -0.524 6.524 10 N -0.595 5.595 11 C 0.108 3.892 12 C -0.123 4.123 13 C 0.082 3.918 14 H 0.053 0.947 15 O -0.388 6.388 16 C 0.039 3.961 17 C 0.137 3.863 18 N -0.583 5.583 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.902 5.902 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.288 1.288 27 C 0.135 3.865 28 H 0.074 0.926 29 C 0.105 3.895 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.200 0.800 34 H 0.174 0.826 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.028 0.972 42 H 0.100 0.900 43 H 0.256 0.744 44 H 0.092 0.908 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 14.427 -2.785 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 N -0.238 5.238 4 C 0.021 3.979 5 N -0.240 5.240 6 C 0.016 3.984 7 C -0.237 4.237 8 C 0.348 3.652 9 O -0.401 6.401 10 N -0.328 5.328 11 C -0.015 4.015 12 C -0.162 4.162 13 C 0.022 3.978 14 H 0.071 0.929 15 O -0.307 6.307 16 C -0.039 4.039 17 C 0.012 3.988 18 N -0.305 5.305 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.738 3.262 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.215 1.215 27 C 0.026 3.974 28 H 0.092 0.908 29 C -0.018 4.018 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.216 0.784 34 H 0.191 0.809 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.046 0.954 42 H 0.118 0.882 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.305 15.036 -2.241 17.824 hybrid contribution -1.333 -1.337 -0.125 1.892 sum 7.972 13.699 -2.365 16.025 Atomic orbital electron populations 1.20882 0.86893 1.04267 1.04575 1.21880 0.97914 0.86559 0.85917 1.68357 1.10305 1.29641 1.15456 1.25154 0.86753 0.97243 0.88762 1.68471 1.41364 0.98898 1.15262 1.23530 0.90688 0.96725 0.87420 1.21742 0.96607 0.96488 1.08827 1.17812 0.83030 0.82752 0.81570 1.90825 1.29766 1.80285 1.39240 1.48253 1.41275 1.12966 1.30326 1.21413 0.91897 1.00643 0.87504 1.21416 1.01598 0.95934 0.97205 1.22195 0.88944 0.88052 0.98564 0.92869 1.87711 1.34407 1.15902 1.92687 1.23365 0.98963 0.81648 0.99946 1.21519 0.87396 0.95616 0.94304 1.44264 1.03069 0.97874 1.85340 1.19217 0.84520 1.05758 1.28958 0.91328 1.25154 0.97922 0.99611 0.96486 1.69960 1.35859 1.17131 1.31620 0.86135 0.83854 0.78574 0.77686 1.20179 1.21486 1.21466 1.21575 0.95066 0.88842 0.91915 0.90784 1.22404 0.98454 0.79818 1.01100 0.88710 0.89824 0.89508 0.78367 0.80881 0.90782 0.90239 0.90122 0.90692 0.94101 0.90096 0.95352 0.88229 0.93401 0.88947 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.42 36.01 0.34 -0.90 16 2 C 0.22 2.79 6.86 -81.81 -0.56 2.23 16 3 N -0.52 -6.08 10.36 -10.48 -0.11 -6.19 16 4 C 0.31 3.07 12.27 -92.03 -1.13 1.94 16 5 N -0.53 -5.77 10.42 -14.24 -0.15 -5.91 16 6 C 0.18 2.05 8.86 -16.78 -0.15 1.90 16 7 C -0.23 -2.96 4.84 -104.69 -0.51 -3.47 16 8 C 0.56 8.84 6.39 -12.34 -0.08 8.77 16 9 O -0.52 -10.09 15.16 5.32 0.08 -10.01 16 10 N -0.60 -9.12 2.96 -175.15 -0.52 -9.64 16 11 C 0.11 1.33 5.15 -4.75 -0.02 1.30 16 12 C -0.12 -1.56 5.67 -27.96 -0.16 -1.72 16 13 C 0.08 1.37 2.72 -26.88 -0.07 1.29 16 14 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 15 O -0.39 -6.82 9.73 -35.23 -0.34 -7.16 16 16 C 0.04 0.70 6.98 37.28 0.26 0.96 16 17 C 0.14 3.07 4.93 -3.55 -0.02 3.05 16 18 N -0.58 -13.71 2.73 -163.87 -0.45 -14.16 16 19 C -0.26 -6.67 9.70 -15.06 -0.15 -6.81 16 20 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 21 C 0.01 0.20 5.09 -17.43 -0.09 0.11 16 22 N -0.90 -24.95 10.94 55.49 0.61 -24.34 16 23 Si 0.91 21.04 29.57 -169.99 -5.03 16.02 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 2.65 2.97 -67.08 -0.20 2.46 16 28 H 0.07 1.50 7.99 -51.93 -0.42 1.09 16 29 C 0.11 2.01 5.68 -3.72 -0.02 1.99 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.10 6.65 -51.93 -0.35 0.76 16 33 H 0.20 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.17 1.64 7.42 -52.48 -0.39 1.25 16 35 H 0.07 0.77 5.11 -51.93 -0.27 0.51 16 36 H 0.08 0.96 8.00 -51.93 -0.42 0.54 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.03 0.68 7.26 -51.93 -0.38 0.30 16 42 H 0.10 2.49 6.10 -51.93 -0.32 2.17 16 43 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.09 2.05 6.99 -51.93 -0.36 1.69 16 45 H 0.07 1.46 6.72 -51.93 -0.35 1.11 16 LS Contribution 354.19 15.07 5.34 5.34 Total: -1.00 -30.47 354.19 -9.29 -39.76 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.17 Total: 3.20 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -2.55 Total: 13.09 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.62 Total: -60.24 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.26 Total: -17.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.47 -9.29 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074180943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.810 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds