Wall clock time and date at job start Tue Mar 31 2020 16:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32159 * 120.53917 * 2 1 4 4 C 1.31856 * 120.96558 * 180.26878 * 3 2 1 5 5 N 1.31882 * 122.09875 * 359.74584 * 4 3 2 6 6 C 1.32136 * 120.96371 * 359.97438 * 5 4 3 7 7 C 1.39938 * 120.53612 * 179.73740 * 2 1 3 8 8 C 1.47831 * 120.93965 * 359.97438 * 7 2 1 9 9 O 1.21549 * 119.99933 * 311.03283 * 8 7 2 10 10 N 1.34777 * 119.99970 * 131.02391 * 8 7 2 11 11 C 1.46983 * 120.72011 * 354.63620 * 10 8 7 12 12 C 1.51063 * 108.67199 * 234.00304 * 11 10 8 13 13 C 1.52511 * 110.93173 * 306.36965 * 12 11 10 14 14 H 1.09005 * 108.39551 * 178.24454 * 13 12 11 15 15 O 1.42684 * 110.62494 * 297.61560 * 13 12 11 16 16 C 1.43078 * 113.87003 * 185.35488 * 15 13 12 17 17 C 1.53236 * 109.44239 * 298.34573 * 16 15 13 18 18 N 1.47172 * 108.69205 * 51.59231 * 17 16 15 19 19 C 1.36938 * 121.21790 * 129.03120 * 18 17 16 20 20 H 1.07998 * 119.99630 * 208.66821 * 19 18 17 21 21 C 1.38808 * 120.00444 * 28.67127 * 19 18 17 22 22 N 1.31622 * 120.00117 * 10.57300 * 21 19 18 23 23 Si 1.86805 * 120.00122 * 190.56537 * 21 19 18 24 24 H 1.48496 * 109.46707 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46788 * 120.00092 * 23 21 19 26 26 H 1.48493 * 109.47246 * 240.00371 * 23 21 19 27 27 C 1.47588 * 117.55382 * 309.04750 * 18 17 16 28 28 H 1.09002 * 110.31422 * 172.29456 * 27 18 17 29 29 C 1.46791 * 120.72262 * 174.64958 * 10 8 7 30 30 H 1.09004 * 109.47212 * 273.76059 * 1 2 3 31 31 H 1.08994 * 109.46864 * 33.76193 * 1 2 3 32 32 H 1.09000 * 109.46898 * 153.76221 * 1 2 3 33 33 H 1.08002 * 118.94644 * 179.72335 * 4 3 2 34 34 H 1.08003 * 120.53094 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.64448 * 354.24936 * 11 10 8 36 36 H 1.08998 * 109.64064 * 114.66859 * 11 10 8 37 37 H 1.09004 * 109.70741 * 185.36668 * 12 11 10 38 38 H 1.08996 * 107.97608 * 66.25949 * 12 11 10 39 39 H 1.08994 * 109.47846 * 58.33763 * 16 15 13 40 40 H 1.09001 * 109.47347 * 178.35902 * 16 15 13 41 41 H 1.09005 * 109.59954 * 291.82920 * 17 16 15 42 42 H 1.08999 * 109.59758 * 171.35497 * 17 16 15 43 43 H 0.96994 * 120.00192 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.52280 * 5.78452 * 29 10 8 45 45 H 1.08999 * 109.53018 * 245.58826 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4971 1.1481 -0.0053 5 7 4.2062 0.0361 -0.0059 6 6 3.6164 -1.1463 -0.0006 7 6 2.2180 -1.2053 0.0055 8 6 1.5121 -2.5041 0.0120 9 8 0.6150 -2.7043 0.8074 10 7 1.8631 -3.4663 -0.8641 11 6 2.8631 -3.2023 -1.9084 12 6 2.2665 -3.5573 -3.2501 13 6 1.7272 -4.9838 -3.2463 14 1 1.2800 -5.1851 -4.2199 15 8 2.7807 -5.9188 -3.0186 16 6 2.3732 -7.2865 -3.1214 17 6 1.3099 -7.5832 -2.0586 18 7 0.2479 -6.5692 -2.1579 19 6 -1.0708 -6.9284 -2.2422 20 1 -1.7727 -6.2892 -2.7571 21 6 -1.5054 -8.1141 -1.6660 22 7 -0.7071 -8.7883 -0.8657 23 14 -3.2235 -8.7529 -2.0262 24 1 -3.9157 -7.8179 -2.9492 25 1 -3.1307 -10.0935 -2.6581 26 1 -3.9895 -8.8552 -0.7583 27 6 0.6565 -5.1510 -2.1636 28 1 -0.2000 -4.5113 -2.3768 29 6 1.2547 -4.8005 -0.7962 30 1 -0.3634 0.0674 1.0255 31 1 -0.3633 0.8543 -0.5711 32 1 -0.3633 -0.9218 -0.4543 33 1 4.0127 2.0970 -0.0097 34 1 4.2039 -2.0525 -0.0006 35 1 3.1413 -2.1486 -1.8914 36 1 3.7460 -3.8172 -1.7339 37 1 3.0246 -3.4585 -4.0271 38 1 1.4512 -2.8621 -3.4502 39 1 1.9571 -7.4683 -4.1123 40 1 3.2349 -7.9352 -2.9643 41 1 1.7623 -7.5431 -1.0676 42 1 0.8875 -8.5732 -2.2304 43 1 -1.0106 -9.6170 -0.4633 44 1 0.4672 -4.8039 -0.0426 45 1 2.0157 -5.5350 -0.5326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074180943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:55 Heat of formation + Delta-G solvation = -11.603087 kcal Electronic energy + Delta-G solvation = -29947.128375 eV Core-core repulsion = 25965.201634 eV Total energy + Delta-G solvation = -3981.926741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53500 -41.28098 -39.93364 -37.36900 -36.44807 -35.50704 -34.17860 -33.31731 -33.02922 -31.18011 -29.91759 -29.11752 -27.09331 -25.68302 -25.46901 -24.47945 -23.92413 -22.96627 -21.42199 -19.91540 -19.14443 -18.87438 -18.36644 -17.85953 -17.33885 -17.11576 -16.93967 -16.55360 -16.17282 -16.07315 -15.56129 -15.41766 -15.08971 -14.88518 -14.82416 -14.36882 -14.20685 -14.08523 -13.94902 -13.86155 -13.49247 -13.32545 -13.02546 -12.89720 -12.76345 -12.62921 -12.46693 -12.23928 -12.07693 -11.88476 -11.80877 -11.59707 -11.23651 -11.07496 -10.74757 -10.62620 -10.53499 -10.42570 -9.79891 -8.68799 -7.92104 -5.44099 -0.55588 -0.14118 1.42268 1.45546 1.46332 1.55175 1.78039 2.44888 2.58859 2.87054 2.91648 3.05452 3.23369 3.23698 3.29242 3.43724 3.78115 3.83726 3.89693 4.10678 4.14443 4.22682 4.27917 4.37124 4.41352 4.47419 4.55573 4.56189 4.61231 4.70716 4.75379 4.82695 4.87942 4.94637 4.95845 5.02642 5.19582 5.24519 5.28794 5.38107 5.56900 5.62986 5.74599 6.27097 6.27756 6.36481 6.89877 6.93725 7.05684 7.70594 8.25014 9.11809 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.003639 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.341678 B = 7692.469004 C = 8648.513936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.220 3.780 3 N -0.531 5.531 4 C 0.316 3.684 5 N -0.529 5.529 6 C 0.194 3.806 7 C -0.244 4.244 8 C 0.566 3.434 9 O -0.570 6.570 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.117 4.117 13 C 0.087 3.913 14 H 0.051 0.949 15 O -0.381 6.381 16 C 0.051 3.949 17 C 0.144 3.856 18 N -0.602 5.602 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.043 4.043 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.294 1.294 27 C 0.132 3.868 28 H 0.062 0.938 29 C 0.125 3.875 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.238 0.762 34 H 0.192 0.808 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.004 0.996 42 H 0.070 0.930 43 H 0.252 0.748 44 H 0.050 0.950 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 16.860 -4.383 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 N -0.246 5.246 4 C 0.030 3.970 5 N -0.243 5.243 6 C 0.027 3.973 7 C -0.252 4.252 8 C 0.354 3.646 9 O -0.449 6.449 10 N -0.324 5.324 11 C -0.013 4.013 12 C -0.155 4.155 13 C 0.028 3.972 14 H 0.069 0.931 15 O -0.300 6.300 16 C -0.026 4.026 17 C 0.019 3.981 18 N -0.325 5.325 19 C -0.394 4.394 20 H 0.084 0.916 21 C -0.239 4.239 22 N -0.576 5.576 23 Si 0.797 3.203 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.222 1.222 27 C 0.024 3.976 28 H 0.080 0.920 29 C 0.000 4.000 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.254 0.746 34 H 0.208 0.792 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.127 0.873 41 H 0.022 0.978 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.375 17.517 -3.875 21.243 hybrid contribution -1.932 -1.978 0.410 2.795 sum 9.443 15.540 -3.465 18.511 Atomic orbital electron populations 1.20846 0.86839 1.04096 1.04581 1.21992 0.98270 0.86802 0.85560 1.68455 1.11145 1.28862 1.16112 1.25981 0.86311 0.98426 0.86311 1.68610 1.41166 0.98927 1.15615 1.23788 0.89818 0.97702 0.85999 1.21440 0.97312 0.94757 1.11697 1.18207 0.82344 0.83532 0.80541 1.90801 1.31926 1.81216 1.40978 1.48196 1.41628 1.11366 1.31256 1.21658 0.91048 1.02528 0.86057 1.21445 1.02851 0.92820 0.98365 1.22202 0.88053 0.90322 0.96651 0.93123 1.87727 1.34287 1.15477 1.92527 1.23187 0.98548 0.82666 0.98232 1.21336 0.88011 0.94179 0.94586 1.44466 1.02614 0.99734 1.85647 1.19480 0.85852 1.05738 1.28362 0.91617 1.25845 1.01207 1.00073 0.96749 1.70116 1.37332 1.17334 1.32854 0.85189 0.79954 0.78045 0.77154 1.19168 1.21220 1.22160 1.21707 0.95929 0.86596 0.93366 0.91977 1.21805 0.96905 0.81784 0.99468 0.88944 0.87860 0.91406 0.74580 0.79153 0.88063 0.89260 0.86816 0.89717 0.93722 0.87331 0.97835 0.91200 0.93900 0.93118 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 9.42 71.24 0.67 -1.71 16 2 C 0.22 5.14 6.86 42.92 0.29 5.44 16 3 N -0.53 -10.87 10.36 -187.05 -1.94 -12.81 16 4 C 0.32 5.11 12.27 180.84 2.22 7.33 16 5 N -0.53 -9.68 10.42 -198.97 -2.07 -11.75 16 6 C 0.19 3.78 8.86 85.06 0.75 4.54 16 7 C -0.24 -5.96 4.84 -19.91 -0.10 -6.05 16 8 C 0.57 17.87 6.39 86.78 0.55 18.42 16 9 O -0.57 -22.96 15.16 -3.87 -0.06 -23.01 16 10 N -0.59 -17.94 2.96 -826.33 -2.45 -20.39 16 11 C 0.11 2.34 5.15 85.66 0.44 2.78 16 12 C -0.12 -2.58 5.67 29.80 0.17 -2.41 16 13 C 0.09 2.77 2.72 30.49 0.08 2.85 16 14 H 0.05 1.67 8.13 -2.38 -0.02 1.65 16 15 O -0.38 -12.64 9.73 -148.98 -1.45 -14.09 16 16 C 0.05 1.83 6.98 72.06 0.50 2.33 16 17 C 0.14 6.67 4.93 86.33 0.43 7.10 16 18 N -0.60 -29.28 2.73 -672.36 -1.84 -31.12 16 19 C -0.26 -14.29 9.70 84.03 0.82 -13.48 16 20 H 0.07 3.50 7.85 -2.91 -0.02 3.48 16 21 C -0.04 -2.34 5.09 84.86 0.43 -1.91 16 22 N -0.93 -53.76 10.94 21.65 0.24 -53.52 16 23 Si 0.97 44.44 29.57 68.60 2.03 46.46 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 27 C 0.13 5.31 2.97 44.95 0.13 5.44 16 28 H 0.06 2.61 7.99 -2.39 -0.02 2.59 16 29 C 0.13 4.96 5.68 86.43 0.49 5.46 16 30 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.77 6.65 -2.39 -0.02 1.75 16 33 H 0.24 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.19 2.97 7.42 -2.91 -0.02 2.95 16 35 H 0.10 1.72 5.11 -2.39 -0.01 1.70 16 36 H 0.09 1.83 8.00 -2.39 -0.02 1.81 16 37 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.00 0.18 7.26 -2.38 -0.02 0.16 16 42 H 0.07 3.65 6.10 -2.39 -0.01 3.63 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.05 2.42 6.99 -2.39 -0.02 2.40 16 45 H 0.06 2.46 6.72 -2.39 -0.02 2.45 16 Total: -1.00 -69.68 354.19 1.36 -68.32 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.02 Total: 15.79 kcal Atomic # 6 Polarization: 28.25 SS G_CDS: 7.89 Total: 36.14 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -8.06 Total: -129.60 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.51 Total: -37.11 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -69.68 1.36 -68.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074180943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.713 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds