Wall clock time and date at job start Tue Mar 31 2020 17:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32211 * 120.51277 * 2 1 4 4 C 1.31907 * 121.14669 * 179.97438 * 3 2 1 5 5 N 1.31754 * 122.19494 * 0.02606 * 4 3 2 6 6 C 1.32746 * 120.87116 * 359.67910 * 5 4 3 7 7 O 1.35269 * 120.62202 * 180.28864 * 6 5 4 8 8 C 1.39765 * 120.50785 * 179.97438 * 2 1 3 9 9 C 1.47534 * 120.97829 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00122 * 90.00119 * 9 8 2 11 11 N 1.34782 * 120.00138 * 269.99764 * 9 8 2 12 12 C 1.46497 * 119.99875 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.94998 * 26.90826 * 12 11 9 14 14 C 1.53949 * 113.66574 * 255.49565 * 12 11 9 15 15 C 1.53949 * 87.29670 * 220.79573 * 14 12 11 16 16 H 1.08998 * 113.65772 * 139.29939 * 15 14 12 17 17 N 1.46490 * 113.66186 * 270.26195 * 15 14 12 18 18 C 1.36935 * 120.00121 * 255.49183 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.52909 * 86.78310 * 24.73841 * 15 14 12 27 27 C 1.52906 * 121.13880 * 209.38178 * 26 15 14 28 28 C 1.53948 * 86.78398 * 209.37167 * 27 26 15 29 29 C 1.52906 * 121.14379 * 100.81107 * 26 15 14 30 30 H 1.08999 * 109.47022 * 270.02626 * 1 2 3 31 31 H 1.09004 * 109.47039 * 30.02468 * 1 2 3 32 32 H 1.09000 * 109.47362 * 150.01862 * 1 2 3 33 33 H 1.08006 * 118.90554 * 179.97438 * 4 3 2 34 34 H 0.96705 * 113.99962 * 270.28771 * 7 6 5 35 35 H 0.97004 * 119.99766 * 0.02562 * 11 9 8 36 36 H 1.08997 * 113.57559 * 106.19023 * 14 12 11 37 37 H 1.09002 * 113.64819 * 335.41444 * 14 12 11 38 38 H 0.97000 * 120.00577 * 75.49783 * 17 15 14 39 39 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 40 40 H 1.08995 * 113.66414 * 323.84349 * 27 26 15 41 41 H 1.09002 * 113.66550 * 94.90218 * 27 26 15 42 42 H 1.09008 * 113.58200 * 270.13155 * 28 27 26 43 43 H 1.08994 * 113.58337 * 139.33555 * 28 27 26 44 44 H 1.08997 * 113.66670 * 265.10082 * 29 26 15 45 45 H 1.09002 * 113.65781 * 36.15732 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1390 0.0000 4 6 3.4972 1.1536 0.0005 5 7 4.2115 0.0465 0.0005 6 6 3.6234 -1.1435 0.0064 7 8 4.3617 -2.2770 0.0123 8 6 2.2165 -1.2042 0.0005 9 6 1.5122 -2.5005 0.0017 10 8 1.2216 -3.0355 -1.0508 11 7 1.1910 -3.0920 1.1694 12 6 0.4912 -4.3790 1.1705 13 1 0.6866 -4.9698 0.2757 14 6 -1.0031 -4.2696 1.5245 15 6 -0.8230 -5.5473 2.3640 16 1 -1.3534 -5.5236 3.3159 17 7 -1.0566 -6.7826 1.6121 18 6 -2.2176 -7.4857 1.7940 19 1 -2.9611 -7.1293 2.4915 20 6 -2.4388 -8.6566 1.0820 21 7 -1.5325 -9.0913 0.2323 22 14 -4.0229 -9.6152 1.3296 23 1 -4.0145 -10.8184 0.4592 24 1 -4.1312 -10.0335 2.7504 25 1 -5.1817 -8.7563 0.9767 26 6 0.6535 -5.1647 2.4723 27 6 1.7381 -6.2321 2.6215 28 6 2.5489 -5.1765 3.3950 29 6 1.2078 -4.5001 3.7329 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8901 -0.5135 33 1 4.0088 2.1048 0.0001 34 1 4.5802 -2.6086 -0.8695 35 1 1.4226 -2.6650 2.0091 36 1 -1.6647 -4.4001 0.6681 37 1 -1.2485 -3.3888 2.1179 38 1 -0.3890 -7.1027 0.9854 39 1 -0.7101 -8.5932 0.1034 40 1 1.4337 -7.0829 3.2310 41 1 2.1940 -6.5277 1.6765 42 1 3.1948 -4.5708 2.7592 43 1 3.0670 -5.5770 4.2663 44 1 1.2400 -3.4121 3.6759 45 1 0.7544 -4.8642 4.6548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078706114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:18 Heat of formation + Delta-G solvation = 33.915861 kcal Electronic energy + Delta-G solvation = -29127.738719 eV Core-core repulsion = 25147.785828 eV Total energy + Delta-G solvation = -3979.952891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78739 -40.70267 -38.88142 -38.11902 -35.27530 -34.60076 -34.27660 -32.82514 -32.06213 -29.49575 -28.95339 -25.86994 -25.67664 -24.42317 -23.95103 -23.24147 -22.92079 -20.87584 -20.31635 -19.30736 -18.74684 -18.43371 -17.48486 -17.23499 -16.66118 -16.19311 -15.62257 -15.43654 -15.22922 -14.67256 -14.38629 -14.36180 -13.79567 -13.74498 -13.58892 -13.24593 -13.01131 -12.91399 -12.72138 -12.44939 -12.24767 -12.05709 -11.82321 -11.66037 -11.53907 -10.95228 -10.78006 -10.75619 -10.61524 -10.35050 -10.09849 -9.99281 -9.92593 -9.81056 -9.78908 -9.67596 -9.18542 -8.87980 -8.84272 -7.08445 -6.13575 -3.14661 0.17398 0.46023 2.29880 2.82521 2.96681 3.24407 3.50294 3.53607 3.54095 3.71262 3.81247 4.33703 4.51333 4.53411 4.59655 4.74253 4.77493 4.83092 4.89326 5.02241 5.14948 5.18771 5.28262 5.35187 5.50657 5.57365 5.64032 5.75432 5.79510 5.81956 5.87392 5.95132 5.98603 6.07122 6.23368 6.33313 6.37932 6.46094 6.55192 6.61126 6.67794 6.88858 6.92283 7.40353 7.54272 7.78600 8.03706 8.71692 9.17573 10.03913 10.17916 11.34125 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.003046 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.589129 B = 9191.636402 C = 9721.361552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.228 3.772 3 N -0.526 5.526 4 C 0.334 3.666 5 N -0.542 5.542 6 C 0.399 3.601 7 O -0.469 6.469 8 C -0.250 4.250 9 C 0.575 3.425 10 O -0.525 6.525 11 N -0.699 5.699 12 C 0.153 3.847 13 H 0.114 0.886 14 C -0.182 4.182 15 C 0.192 3.808 16 H 0.068 0.932 17 N -0.712 5.712 18 C -0.335 4.335 19 H 0.066 0.934 20 C -0.042 4.042 21 N -0.940 5.940 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.127 4.127 27 C -0.115 4.115 28 C -0.141 4.141 29 C -0.109 4.109 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.206 0.794 34 H 0.416 0.584 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.369 0.631 39 H 0.256 0.744 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.138 19.873 3.539 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 N -0.242 5.242 4 C 0.046 3.954 5 N -0.267 5.267 6 C 0.211 3.789 7 O -0.278 6.278 8 C -0.259 4.259 9 C 0.358 3.642 10 O -0.401 6.401 11 N -0.349 5.349 12 C 0.049 3.951 13 H 0.132 0.868 14 C -0.224 4.224 15 C 0.079 3.921 16 H 0.086 0.914 17 N -0.351 5.351 18 C -0.466 4.466 19 H 0.084 0.916 20 C -0.240 4.240 21 N -0.585 5.585 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.130 4.130 27 C -0.153 4.153 28 C -0.178 4.178 29 C -0.147 4.147 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.223 0.777 34 H 0.277 0.723 35 H 0.233 0.767 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.330 18.931 3.025 21.321 hybrid contribution 1.073 0.804 0.185 1.354 sum 10.404 19.735 3.210 22.539 Atomic orbital electron populations 1.20965 0.86746 1.05228 1.04530 1.21854 0.97854 0.85935 0.86121 1.68313 1.10180 1.29388 1.16315 1.24993 0.86276 0.96139 0.87945 1.68074 1.42643 0.98679 1.17353 1.19400 0.85531 0.86000 0.87974 1.84621 1.72446 1.35846 1.34862 1.21896 0.95106 0.97158 1.11735 1.17564 0.78505 0.83372 0.84767 1.90872 1.53828 1.64258 1.31114 1.46096 1.58386 1.22802 1.07589 1.22360 0.92370 0.82430 0.97936 0.86822 1.24312 0.94893 1.00988 1.02253 1.20698 0.90986 0.86103 0.94326 0.91378 1.42085 1.21034 1.23598 1.48403 1.20040 0.96263 1.06559 1.23746 0.91592 1.25785 1.05093 0.96361 0.96734 1.70885 1.09112 1.41458 1.37011 0.83245 0.74062 0.76153 0.75483 1.21037 1.22245 1.22216 1.23484 0.97854 0.97275 0.94358 1.22561 0.95632 0.96602 1.00477 1.22875 0.96057 0.98752 1.00160 1.22515 0.96569 0.98479 0.97150 0.88704 0.88867 0.89323 0.77719 0.72263 0.76681 0.90766 0.91060 0.79682 0.93312 0.89410 0.91811 0.90641 0.91809 0.92417 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.85 36.00 0.35 -0.69 16 2 C 0.23 2.43 6.86 -81.86 -0.56 1.87 16 3 N -0.53 -5.27 10.36 -10.52 -0.11 -5.38 16 4 C 0.33 2.95 12.27 -92.09 -1.13 1.82 16 5 N -0.54 -5.79 10.45 -14.32 -0.15 -5.94 16 6 C 0.40 4.53 7.85 -16.18 -0.13 4.40 16 7 O -0.47 -4.91 13.10 -17.50 -0.23 -5.14 16 8 C -0.25 -2.95 5.67 -104.56 -0.59 -3.55 16 9 C 0.58 8.02 5.51 -12.47 -0.07 7.96 16 10 O -0.52 -9.38 16.75 5.29 0.09 -9.29 16 11 N -0.70 -9.00 5.30 -54.41 -0.29 -9.29 16 12 C 0.15 2.40 4.00 -67.48 -0.27 2.13 16 13 H 0.11 2.15 7.54 -51.93 -0.39 1.76 16 14 C -0.18 -3.06 7.68 -25.75 -0.20 -3.26 16 15 C 0.19 3.63 4.35 -67.49 -0.29 3.34 16 16 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 17 N -0.71 -17.11 5.12 -53.00 -0.27 -17.38 16 18 C -0.34 -9.16 9.98 -15.06 -0.15 -9.31 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 21 N -0.94 -28.73 13.70 55.49 0.76 -27.97 16 22 Si 1.08 25.58 29.92 -169.99 -5.09 20.49 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.13 -1.93 0.91 -154.71 -0.14 -2.07 16 27 C -0.12 -1.77 7.43 -26.29 -0.20 -1.97 16 28 C -0.14 -1.74 8.08 -25.75 -0.21 -1.94 16 29 C -0.11 -1.33 7.45 -26.28 -0.20 -1.52 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.92 7.18 -51.93 -0.37 0.55 16 33 H 0.21 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.42 2.73 9.06 45.56 0.41 3.14 16 35 H 0.40 4.36 6.65 -40.82 -0.27 4.08 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.37 9.29 6.57 -40.82 -0.27 9.02 16 39 H 0.26 7.71 6.77 -40.82 -0.28 7.44 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.60 6.42 -51.93 -0.33 0.26 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -34.16 376.89 -8.84 -43.00 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -5.36 Total: 15.30 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.87 Total: -4.08 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -0.06 Total: -65.96 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.14 Total: -14.43 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.09 Total: 20.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.16 -8.84 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078706114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.913 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds