Wall clock time and date at job start Tue Mar 31 2020 17:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32226 * 120.50438 * 2 1 4 4 C 1.31909 * 121.13624 * 180.27654 * 3 2 1 5 5 N 1.31755 * 122.20038 * 359.97438 * 4 3 2 6 6 C 1.32746 * 120.86828 * 0.02562 * 5 4 3 7 7 O 1.35284 * 120.61419 * 180.02562 * 6 5 4 8 8 C 1.39765 * 120.51275 * 180.27708 * 2 1 3 9 9 C 1.47531 * 120.97631 * 359.70305 * 8 2 1 10 10 O 1.21592 * 120.00242 * 90.00317 * 9 8 2 11 11 N 1.34777 * 120.00206 * 269.99896 * 9 8 2 12 12 C 1.46498 * 120.00043 * 180.02562 * 11 9 8 13 13 H 1.08995 * 112.88922 * 334.66377 * 12 11 9 14 14 C 1.53951 * 113.66291 * 106.01635 * 12 11 9 15 15 C 1.54251 * 87.19404 * 89.78683 * 14 12 11 16 16 H 1.09003 * 113.74422 * 270.25607 * 15 14 12 17 17 N 1.46496 * 113.66938 * 139.20287 * 15 14 12 18 18 C 1.36935 * 120.00111 * 107.81933 * 17 15 14 19 19 H 1.08004 * 119.99583 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00059 * 180.02562 * 18 17 15 21 21 N 1.31608 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99639 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47082 * 90.00056 * 22 20 18 24 24 H 1.48503 * 109.46973 * 209.99636 * 22 20 18 25 25 H 1.48498 * 109.47189 * 329.99433 * 22 20 18 26 26 C 1.52913 * 113.66330 * 203.32352 * 12 11 9 27 27 C 1.52907 * 121.13972 * 144.71004 * 26 12 11 28 28 C 1.53949 * 86.78307 * 209.38080 * 27 26 12 29 29 C 1.52907 * 121.14003 * 36.14247 * 26 12 11 30 30 H 1.08998 * 109.47161 * 269.72309 * 1 2 3 31 31 H 1.08998 * 109.47461 * 29.72232 * 1 2 3 32 32 H 1.09000 * 109.46700 * 149.72642 * 1 2 3 33 33 H 1.08007 * 118.89673 * 179.97438 * 4 3 2 34 34 H 0.96696 * 114.00306 * 269.97662 * 7 6 5 35 35 H 0.97003 * 119.99913 * 0.02562 * 11 9 8 36 36 H 1.09003 * 113.58064 * 204.34532 * 14 12 11 37 37 H 1.09001 * 113.57784 * 335.13419 * 14 12 11 38 38 H 0.96998 * 119.99868 * 287.82240 * 17 15 14 39 39 H 0.97006 * 119.99814 * 179.97438 * 21 20 18 40 40 H 1.08996 * 113.66159 * 323.84836 * 27 26 12 41 41 H 1.08995 * 113.66369 * 94.91030 * 27 26 12 42 42 H 1.09001 * 113.57984 * 270.12932 * 28 27 26 43 43 H 1.08995 * 113.65589 * 139.34712 * 28 27 26 44 44 H 1.09003 * 113.66355 * 265.09962 * 29 26 12 45 45 H 1.09004 * 113.65797 * 36.05357 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 -0.0054 5 7 4.2115 0.0467 -0.0106 6 6 3.6234 -1.1433 -0.0111 7 8 4.3619 -2.2768 -0.0159 8 6 2.2167 -1.2041 -0.0058 9 6 1.5125 -2.5005 -0.0055 10 8 1.2176 -3.0325 -1.0584 11 7 1.1960 -3.0953 1.1618 12 6 0.4973 -4.3829 1.1620 13 1 -0.0865 -4.5486 0.2566 14 6 1.3954 -5.5732 1.5447 15 6 0.9885 -5.3117 3.0094 16 1 1.6457 -4.6150 3.5298 17 7 0.7321 -6.5336 3.7757 18 6 1.6213 -6.9396 4.7347 19 1 2.5118 -6.3592 4.9258 20 6 1.3786 -8.0977 5.4605 21 7 0.2937 -8.8053 5.2272 22 14 2.5913 -8.6511 6.7692 23 1 2.2181 -8.0511 8.0753 24 1 2.5606 -10.1318 6.8780 25 1 3.9590 -8.2105 6.3947 26 6 -0.2773 -4.6605 2.4508 27 6 -1.6086 -5.4124 2.4269 28 6 -1.9892 -4.6027 3.6797 29 6 -0.9864 -3.5353 3.2053 30 1 -0.3633 -0.0050 1.0276 31 1 -0.3634 0.8924 -0.5095 32 1 -0.3633 -0.8875 -0.5181 33 1 4.0087 2.1051 -0.0057 34 1 4.5734 -2.6048 -0.9006 35 1 1.4310 -2.6708 2.0017 36 1 1.0413 -6.5288 1.1577 37 1 2.4537 -5.4021 1.3473 38 1 -0.0675 -7.0551 3.6038 39 1 0.1243 -9.6148 5.7342 40 1 -2.2235 -5.1856 1.5560 41 1 -1.5101 -6.4822 2.6108 42 1 -1.7029 -5.0850 4.6143 43 1 -3.0236 -4.2592 3.6809 44 1 -0.3909 -3.1056 4.0108 45 1 -1.4250 -2.7800 2.5531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078706116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:23 Heat of formation + Delta-G solvation = 32.962383 kcal Electronic energy + Delta-G solvation = -29000.682833 eV Core-core repulsion = 25020.688595 eV Total energy + Delta-G solvation = -3979.994237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75808 -40.57310 -38.89463 -38.07511 -35.08884 -34.58239 -34.09518 -32.66684 -31.86045 -29.90181 -29.01591 -25.82082 -25.47488 -24.51690 -24.16594 -23.21830 -22.33493 -21.24976 -20.13354 -19.26501 -18.44610 -18.30716 -17.76721 -16.98648 -16.61687 -16.08588 -15.52333 -15.19841 -14.98470 -14.65169 -14.61766 -14.35532 -13.87602 -13.73454 -13.51900 -13.24340 -13.00083 -12.66307 -12.51289 -12.43511 -12.05979 -11.83184 -11.75537 -11.61979 -11.39808 -10.90589 -10.86561 -10.75272 -10.65068 -10.29059 -10.19425 -10.05963 -9.91498 -9.82646 -9.76365 -9.67518 -9.42900 -8.88129 -8.81278 -7.00620 -5.82887 -3.11454 0.19998 0.49216 2.28118 2.86436 2.93811 3.26103 3.40037 3.46204 3.47309 3.55525 3.83563 4.34621 4.54017 4.54616 4.71332 4.76871 4.90494 4.96990 5.03594 5.13284 5.17972 5.23796 5.26658 5.40223 5.49403 5.65117 5.75242 5.80752 5.90989 5.95218 6.00894 6.06657 6.09002 6.26710 6.37041 6.40213 6.41706 6.53329 6.60222 6.83728 6.87550 6.94634 6.99289 7.41336 7.57335 7.65792 8.02743 8.35890 9.47731 10.04250 10.39155 11.39283 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014897 B = 0.003226 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.083200 B = 8677.565086 C = 9639.848833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.228 3.772 3 N -0.527 5.527 4 C 0.335 3.665 5 N -0.542 5.542 6 C 0.401 3.599 7 O -0.467 6.467 8 C -0.250 4.250 9 C 0.580 3.420 10 O -0.531 6.531 11 N -0.685 5.685 12 C 0.128 3.872 13 H 0.097 0.903 14 C -0.174 4.174 15 C 0.191 3.809 16 H 0.076 0.924 17 N -0.707 5.707 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.131 4.131 29 C -0.127 4.127 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.206 0.794 34 H 0.415 0.585 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 19.016 -11.259 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 N -0.243 5.243 4 C 0.048 3.952 5 N -0.267 5.267 6 C 0.213 3.787 7 O -0.275 6.275 8 C -0.260 4.260 9 C 0.363 3.637 10 O -0.408 6.408 11 N -0.333 5.333 12 C 0.023 3.977 13 H 0.115 0.885 14 C -0.216 4.216 15 C 0.079 3.921 16 H 0.093 0.907 17 N -0.345 5.345 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.123 4.123 27 C -0.147 4.147 28 C -0.168 4.168 29 C -0.164 4.164 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.223 0.777 34 H 0.277 0.723 35 H 0.236 0.764 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.300 19.355 -11.257 22.392 hybrid contribution 0.474 -1.203 0.601 1.426 sum 0.774 18.152 -10.656 21.062 Atomic orbital electron populations 1.20950 0.86857 1.05000 1.04550 1.21829 0.97792 0.85960 0.86234 1.68318 1.10207 1.29352 1.16410 1.24993 0.86255 0.96159 0.87827 1.68083 1.42618 0.98680 1.17318 1.19417 0.85529 0.86020 0.87723 1.84658 1.72465 1.35785 1.34625 1.21827 0.95098 0.97001 1.12031 1.17479 0.78540 0.83170 0.84512 1.90831 1.54021 1.64859 1.31102 1.45585 1.57858 1.22091 1.07812 1.21807 0.94777 0.82348 0.98803 0.88467 1.24324 0.99000 0.97021 1.01262 1.21341 0.91592 0.89471 0.89728 0.90661 1.42387 1.26408 1.24247 1.41497 1.19280 1.01566 1.05625 1.11122 0.91188 1.24731 0.97798 0.97914 1.00164 1.69648 1.26639 1.17703 1.43881 0.86216 0.80564 0.77733 0.81831 1.21714 1.21758 1.20730 1.23597 0.95861 0.97948 0.94902 1.22452 0.94029 1.00448 0.97776 1.22732 0.97821 0.97201 0.99038 1.22653 0.98448 0.96036 0.99312 0.88647 0.88939 0.89511 0.77730 0.72316 0.76369 0.89470 0.92062 0.77682 0.93426 0.90714 0.90214 0.89158 0.92428 0.91763 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.85 36.01 0.35 -0.57 16 2 C 0.23 2.32 6.86 -81.85 -0.56 1.76 16 3 N -0.53 -5.18 10.36 -10.52 -0.11 -5.29 16 4 C 0.33 2.98 12.27 -92.09 -1.13 1.86 16 5 N -0.54 -5.92 10.45 -14.32 -0.15 -6.07 16 6 C 0.40 4.63 7.85 -16.19 -0.13 4.50 16 7 O -0.47 -5.14 13.10 -17.54 -0.23 -5.37 16 8 C -0.25 -2.88 5.67 -104.57 -0.59 -3.47 16 9 C 0.58 7.60 5.51 -12.47 -0.07 7.53 16 10 O -0.53 -8.57 16.73 5.29 0.09 -8.48 16 11 N -0.69 -8.64 5.06 -54.41 -0.28 -8.91 16 12 C 0.13 1.84 4.09 -67.48 -0.28 1.57 16 13 H 0.10 1.47 7.50 -51.93 -0.39 1.08 16 14 C -0.17 -2.99 7.70 -25.59 -0.20 -3.18 16 15 C 0.19 3.55 4.29 -67.32 -0.29 3.26 16 16 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 17 N -0.71 -16.66 5.32 -52.83 -0.28 -16.94 16 18 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 19 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 20 C -0.01 -0.27 5.50 -17.44 -0.10 -0.37 16 21 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 C -0.12 -1.81 0.91 -154.70 -0.14 -1.95 16 27 C -0.11 -1.65 7.47 -26.28 -0.20 -1.84 16 28 C -0.13 -1.91 8.08 -25.75 -0.21 -2.12 16 29 C -0.13 -1.67 7.46 -26.29 -0.20 -1.87 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.76 7.18 -51.93 -0.37 0.39 16 33 H 0.21 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.42 2.80 9.06 45.56 0.41 3.21 16 35 H 0.40 4.65 8.56 -40.82 -0.35 4.30 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.39 9.65 5.92 -40.82 -0.24 9.41 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.40 6.42 -51.93 -0.33 1.07 16 42 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -32.76 378.67 -8.89 -41.66 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.47 Total: 14.84 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.88 Total: -1.58 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.09 Total: -63.71 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.14 Total: -13.85 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.76 -8.89 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078706116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.620 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds