Wall clock time and date at job start Tue Mar 31 2020 17:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32212 * 120.51490 * 2 1 4 4 C 1.31902 * 121.14479 * 179.97438 * 3 2 1 5 5 N 1.31757 * 122.19679 * 0.02562 * 4 3 2 6 6 C 1.32743 * 120.87068 * 359.69221 * 5 4 3 7 7 O 1.35280 * 120.61561 * 180.30785 * 6 5 4 8 8 C 1.39772 * 120.50694 * 179.97438 * 2 1 3 9 9 C 1.47539 * 120.97652 * 0.02562 * 8 2 1 10 10 O 1.21591 * 119.99747 * 90.00459 * 9 8 2 11 11 N 1.34767 * 119.99960 * 269.99398 * 9 8 2 12 12 C 1.46502 * 119.99976 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.88591 * 23.66250 * 12 11 9 14 14 C 1.53954 * 113.74773 * 252.23017 * 12 11 9 15 15 C 1.53952 * 87.29622 * 270.25076 * 14 12 11 16 16 H 1.08999 * 113.74473 * 220.78425 * 15 14 12 17 17 N 1.46498 * 113.66468 * 89.73682 * 15 14 12 18 18 C 1.36943 * 119.99752 * 107.53505 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 C 1.52914 * 86.78359 * 335.26584 * 15 14 12 27 27 C 1.52904 * 121.13609 * 259.18338 * 26 15 14 28 28 C 1.53957 * 86.78142 * 209.37789 * 27 26 15 29 29 C 1.52912 * 121.13575 * 150.61720 * 26 15 14 30 30 H 1.09005 * 109.47305 * 270.02769 * 1 2 3 31 31 H 1.09010 * 109.47055 * 30.02236 * 1 2 3 32 32 H 1.08993 * 109.47680 * 150.02143 * 1 2 3 33 33 H 1.08008 * 118.90568 * 180.02562 * 4 3 2 34 34 H 0.96705 * 113.99599 * 270.25447 * 7 6 5 35 35 H 0.97008 * 120.00312 * 0.02562 * 11 9 8 36 36 H 1.08998 * 113.57978 * 155.64709 * 14 12 11 37 37 H 1.09001 * 113.58001 * 24.85506 * 14 12 11 38 38 H 0.97001 * 120.00384 * 287.81860 * 17 15 14 39 39 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 40 40 H 1.09002 * 113.66434 * 323.84972 * 27 26 15 41 41 H 1.08996 * 113.66452 * 94.90950 * 27 26 15 42 42 H 1.08990 * 113.57842 * 270.13126 * 28 27 26 43 43 H 1.08999 * 113.64844 * 139.34164 * 28 27 26 44 44 H 1.08996 * 113.66088 * 265.08935 * 29 26 15 45 45 H 1.08995 * 113.65977 * 36.14846 * 29 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4972 1.1535 0.0005 5 7 4.2115 0.0463 0.0005 6 6 3.6233 -1.1437 0.0062 7 8 4.3617 -2.2771 0.0124 8 6 2.2165 -1.2042 0.0005 9 6 1.5121 -2.5006 0.0006 10 8 1.2224 -3.0351 -1.0525 11 7 1.1901 -3.0925 1.1677 12 6 0.4912 -4.3801 1.1677 13 1 0.6436 -4.9451 0.2482 14 6 -0.9842 -4.2846 1.5970 15 6 -0.5022 -4.5060 3.0423 16 1 -1.1425 -5.1713 3.6215 17 7 -0.1802 -3.2651 3.7513 18 6 -1.0097 -2.8063 4.7396 19 1 -1.8989 -3.3616 4.9993 20 6 -0.7077 -1.6275 5.4075 21 7 0.3757 -0.9505 5.0906 22 14 -1.8388 -1.0020 6.7561 23 1 -2.9794 -1.9387 6.9196 24 1 -1.0852 -0.9129 8.0326 25 1 -2.3508 0.3428 6.3887 26 6 0.7179 -5.2015 2.4374 27 6 0.8139 -6.7266 2.3858 28 6 2.3404 -6.5469 2.4731 29 6 2.0688 -5.1930 3.1539 30 1 -0.3634 0.0005 1.0277 31 1 -0.3634 0.8899 -0.5142 32 1 -0.3634 -0.8901 -0.5134 33 1 4.0089 2.1047 0.0009 34 1 4.5803 -2.6090 -0.8692 35 1 1.4211 -2.6660 2.0078 36 1 -1.6030 -5.0964 1.2146 37 1 -1.4243 -3.3015 1.4299 38 1 0.6183 -2.7663 3.5180 39 1 0.5869 -0.1270 5.5576 40 1 0.3813 -7.2219 3.2551 41 1 0.4771 -7.1544 1.4416 42 1 2.8250 -6.4567 1.5011 43 1 2.8295 -7.2717 3.1239 44 1 2.7344 -4.3958 2.8231 45 1 1.9888 -5.2572 4.2390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078706117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:26 Heat of formation + Delta-G solvation = 35.619825 kcal Electronic energy + Delta-G solvation = -29921.416566 eV Core-core repulsion = 25941.537564 eV Total energy + Delta-G solvation = -3979.879002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44678 -40.56891 -38.63345 -37.82395 -35.33250 -34.21984 -33.70513 -32.53283 -31.68047 -29.86485 -28.66115 -25.68644 -25.41825 -24.44996 -24.04647 -22.94008 -22.73690 -20.62526 -20.13939 -18.99607 -18.68487 -18.08646 -17.24127 -17.09442 -16.33642 -15.82965 -15.29490 -15.10838 -14.96075 -14.60668 -14.28644 -14.14068 -13.87185 -13.35739 -13.30461 -13.02643 -12.80412 -12.65181 -12.55188 -12.12592 -12.09339 -11.96843 -11.58637 -11.47938 -11.32003 -11.00033 -10.92862 -10.70726 -10.38257 -10.22661 -10.13415 -9.99057 -9.83386 -9.67421 -9.50017 -9.44427 -9.37187 -8.93024 -8.65382 -7.10338 -5.91067 -3.20076 0.54691 0.85401 2.54838 3.15953 3.20218 3.35767 3.42546 3.44249 3.58996 3.92931 4.18442 4.44065 4.62601 4.70784 4.88428 4.94002 4.99527 5.08527 5.12737 5.26300 5.30756 5.34969 5.59201 5.64735 5.66785 5.82347 5.83490 5.88569 5.92593 5.98064 6.08537 6.11110 6.16691 6.21907 6.31223 6.40514 6.55626 6.61489 6.72071 6.74513 6.88074 6.98819 7.17316 7.61552 7.70387 7.91515 8.25505 8.31309 9.38504 9.93065 10.26451 11.31212 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.005555 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.916489 B = 5039.453690 C = 6958.784642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.238 3.762 3 N -0.524 5.524 4 C 0.334 3.666 5 N -0.544 5.544 6 C 0.397 3.603 7 O -0.468 6.468 8 C -0.248 4.248 9 C 0.584 3.416 10 O -0.542 6.542 11 N -0.680 5.680 12 C 0.149 3.851 13 H 0.094 0.906 14 C -0.185 4.185 15 C 0.179 3.821 16 H 0.067 0.933 17 N -0.700 5.700 18 C -0.242 4.242 19 H 0.074 0.926 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.133 4.133 27 C -0.103 4.103 28 C -0.141 4.141 29 C -0.115 4.115 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.205 0.795 34 H 0.410 0.590 35 H 0.410 0.590 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.378 0.622 39 H 0.256 0.744 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 -3.885 -10.992 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 N -0.240 5.240 4 C 0.047 3.953 5 N -0.269 5.269 6 C 0.209 3.791 7 O -0.276 6.276 8 C -0.257 4.257 9 C 0.367 3.633 10 O -0.420 6.420 11 N -0.331 5.331 12 C 0.044 3.956 13 H 0.111 0.889 14 C -0.227 4.227 15 C 0.067 3.933 16 H 0.085 0.915 17 N -0.339 5.339 18 C -0.372 4.372 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.178 4.178 29 C -0.153 4.153 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.221 0.779 34 H 0.271 0.729 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.213 0.787 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.747 -3.381 -10.960 12.413 hybrid contribution -0.336 0.060 0.679 0.759 sum 4.411 -3.322 -10.281 11.670 Atomic orbital electron populations 1.20981 0.86779 1.04383 1.05397 1.21826 0.97874 0.85884 0.85175 1.68290 1.10084 1.29436 1.16187 1.24939 0.86369 0.96037 0.87969 1.68020 1.42591 0.98653 1.17674 1.19332 0.85450 0.85940 0.88346 1.84661 1.72551 1.36034 1.34341 1.21745 0.95007 0.96980 1.11988 1.17474 0.78172 0.83302 0.84321 1.90783 1.55248 1.64765 1.31194 1.45746 1.57073 1.21747 1.08518 1.21506 0.93343 0.83384 0.97391 0.88851 1.24301 0.94794 1.02154 1.01435 1.21061 0.92778 0.88931 0.90558 0.91490 1.42114 1.28180 1.22815 1.40802 1.19312 1.03446 1.04356 1.10126 0.90795 1.24730 0.97881 0.97832 1.00135 1.69636 1.26159 1.17750 1.44433 0.86111 0.79820 0.78522 0.81668 1.20509 1.21864 1.21832 1.23453 0.97771 0.95740 0.96545 1.22478 0.96238 0.93530 1.01848 1.22857 0.96204 0.98145 1.00639 1.22504 0.95914 0.96674 1.00216 0.87662 0.89207 0.89817 0.77861 0.72920 0.75101 0.90238 0.90883 0.78672 0.93414 0.89609 0.91638 0.90773 0.91935 0.91970 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.85 36.00 0.35 -1.32 16 2 C 0.24 3.71 6.86 -81.86 -0.56 3.15 16 3 N -0.52 -7.75 10.36 -10.52 -0.11 -7.86 16 4 C 0.33 4.37 12.27 -92.09 -1.13 3.24 16 5 N -0.54 -7.88 10.45 -14.32 -0.15 -8.03 16 6 C 0.40 5.98 7.85 -16.19 -0.13 5.85 16 7 O -0.47 -6.18 13.10 -17.53 -0.23 -6.41 16 8 C -0.25 -3.96 5.67 -104.56 -0.59 -4.55 16 9 C 0.58 9.84 5.51 -12.47 -0.07 9.77 16 10 O -0.54 -10.04 16.71 5.29 0.09 -9.95 16 11 N -0.68 -11.53 4.69 -54.40 -0.26 -11.79 16 12 C 0.15 2.39 4.12 -67.47 -0.28 2.11 16 13 H 0.09 1.49 7.46 -51.93 -0.39 1.11 16 14 C -0.18 -3.08 7.69 -25.75 -0.20 -3.28 16 15 C 0.18 3.30 4.36 -67.48 -0.29 3.00 16 16 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 17 N -0.70 -15.87 4.98 -52.99 -0.26 -16.14 16 18 C -0.24 -6.23 9.97 -15.06 -0.15 -6.38 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 22 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 C -0.13 -2.05 0.78 -154.71 -0.12 -2.17 16 27 C -0.10 -1.31 7.84 -26.28 -0.21 -1.52 16 28 C -0.14 -1.80 8.08 -25.74 -0.21 -2.01 16 29 C -0.12 -1.81 7.27 -26.28 -0.19 -2.00 16 30 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 32 H 0.08 1.19 7.18 -51.93 -0.37 0.82 16 33 H 0.21 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.41 3.41 9.06 45.56 0.41 3.82 16 35 H 0.41 7.72 5.93 -40.82 -0.24 7.48 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.38 8.98 5.34 -40.82 -0.22 8.76 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.04 7.58 -51.93 -0.39 0.64 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -31.06 375.96 -8.81 -39.87 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -5.40 Total: 20.19 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.87 Total: 3.54 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -0.05 Total: -69.36 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.14 Total: -16.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.06 -8.81 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078706117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.494 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds