Wall clock time and date at job start Tue Mar 31 2020 16:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38811 * 120.42276 * 2 1 4 4 C 1.39496 * 118.25889 * 180.02562 * 3 2 1 5 5 C 1.48461 * 120.54457 * 180.02562 * 4 3 2 6 6 O 1.21471 * 120.00169 * 351.97717 * 5 4 3 7 7 N 1.34776 * 119.99735 * 171.97955 * 5 4 3 8 8 C 1.47050 * 120.11790 * 172.94972 * 7 5 4 9 9 C 1.53534 * 107.35740 * 130.24245 * 8 7 5 10 10 O 1.42654 * 108.38482 * 55.59590 * 9 8 7 11 11 C 1.42775 * 115.69096 * 295.54279 * 10 9 8 12 12 H 1.09003 * 112.73452 * 290.33944 * 11 10 9 13 13 C 1.55393 * 107.09349 * 166.05282 * 11 10 9 14 14 N 1.47486 * 104.78225 * 281.69108 * 13 11 10 15 15 C 1.36938 * 125.68993 * 155.63432 * 14 13 11 16 16 H 1.07997 * 119.99856 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99688 * 359.97438 * 15 14 13 18 18 N 1.31618 * 120.00510 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99784 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47513 * 89.99648 * 19 17 15 21 21 H 1.48506 * 109.46938 * 209.99630 * 19 17 15 22 22 H 1.48500 * 109.47084 * 329.99468 * 19 17 15 23 23 C 1.47210 * 108.62196 * 335.59745 * 14 13 11 24 24 C 1.45660 * 120.11774 * 352.97012 * 7 5 4 25 25 H 1.09001 * 110.56023 * 345.87195 * 24 7 5 26 26 N 1.33098 * 118.90123 * 0.26939 * 4 3 2 27 27 C 1.31550 * 120.73922 * 359.44794 * 26 4 3 28 28 C 1.50700 * 119.04383 * 180.28998 * 27 26 4 29 29 N 1.31909 * 121.91837 * 0.57031 * 27 26 4 30 30 H 1.09000 * 109.47091 * 90.00719 * 1 2 3 31 31 H 1.09006 * 109.46497 * 210.00253 * 1 2 3 32 32 H 1.09001 * 109.47244 * 330.00107 * 1 2 3 33 33 H 1.08000 * 120.86986 * 0.03981 * 3 2 1 34 34 H 1.08999 * 109.87576 * 10.77795 * 8 7 5 35 35 H 1.08998 * 109.93838 * 249.74351 * 8 7 5 36 36 H 1.09005 * 109.68382 * 295.87259 * 9 8 7 37 37 H 1.08995 * 109.68388 * 175.32051 * 9 8 7 38 38 H 1.09000 * 110.37959 * 40.51261 * 13 11 10 39 39 H 1.08997 * 110.37549 * 162.75160 * 13 11 10 40 40 H 0.96998 * 120.00205 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.96326 * 241.89513 * 23 14 13 42 42 H 1.09000 * 109.95918 * 120.65520 * 23 14 13 43 43 H 1.09000 * 109.47121 * 270.27564 * 28 27 26 44 44 H 1.09006 * 109.47166 * 30.27284 * 28 27 26 45 45 H 1.08994 * 109.47462 * 150.27500 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1970 0.0000 4 6 3.6039 1.1443 -0.0005 5 6 4.4061 2.3935 0.0000 6 8 3.8578 3.4676 -0.1459 7 7 5.7428 2.3358 0.1623 8 6 6.5578 3.5502 0.0093 9 6 7.4699 3.6479 1.2405 10 8 8.2178 2.4375 1.3435 11 6 7.4537 1.2569 1.5901 12 1 7.0259 1.2337 2.5924 13 6 8.3845 0.0440 1.3121 14 7 8.4119 -0.0803 -0.1572 15 6 9.4112 -0.6613 -0.8913 16 1 9.3361 -0.7028 -1.9679 17 6 10.5207 -1.1969 -0.2517 18 7 10.6124 -1.1459 1.0603 19 14 11.8843 -1.9888 -1.2532 20 1 12.8958 -0.9622 -1.6112 21 1 12.5286 -3.0603 -0.4518 22 1 11.3125 -2.5736 -2.4926 23 6 7.1853 0.5235 -0.7030 24 6 6.3854 1.0702 0.4895 25 1 5.6454 0.3366 0.8093 26 7 4.2027 -0.0443 -0.0065 27 6 3.4955 -1.1535 -0.0009 28 6 4.2131 -2.4787 -0.0014 29 7 2.1765 -1.1397 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6912 2.1442 0.0006 34 1 5.9113 4.4262 -0.0434 35 1 7.1621 3.4808 -0.8951 36 1 6.8640 3.7824 2.1366 37 1 8.1507 4.4915 1.1271 38 1 9.3863 0.2387 1.6951 39 1 7.9754 -0.8597 1.7637 40 1 11.3879 -1.5198 1.5071 41 1 6.6006 -0.2317 -1.2283 42 1 7.4413 1.3359 -1.3831 43 1 4.3857 -2.7981 -1.0292 44 1 5.1689 -2.3746 0.5121 45 1 3.6037 -3.2221 0.5125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083223174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:02 Heat of formation + Delta-G solvation = 33.828526 kcal Electronic energy + Delta-G solvation = -30091.433402 eV Core-core repulsion = 26111.476724 eV Total energy + Delta-G solvation = -3979.956678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62401 -40.10650 -38.39566 -35.68248 -35.10770 -34.35053 -33.57847 -32.10640 -29.90642 -29.42936 -28.38198 -27.93314 -27.16973 -25.12529 -24.31246 -22.77038 -22.35535 -20.92154 -20.27633 -19.04911 -18.20304 -17.20667 -16.74660 -16.32430 -15.99168 -15.78043 -15.51571 -15.01615 -14.94556 -14.65915 -14.41345 -14.09618 -13.79924 -13.63395 -13.40235 -13.16485 -12.86582 -12.70446 -12.59226 -12.34904 -12.30837 -11.89092 -11.76698 -11.20554 -11.12326 -10.93932 -10.89393 -10.74107 -10.71318 -10.55675 -10.37184 -10.14850 -9.91773 -9.69147 -9.56547 -9.47823 -8.83173 -8.64615 -8.24297 -6.79763 -5.62278 -3.02658 0.35903 0.70937 2.61767 2.80023 3.43037 3.48075 3.49575 3.57189 3.65951 3.72547 4.12956 4.28104 4.53050 4.63934 4.70761 4.97566 5.05363 5.18547 5.19573 5.26848 5.30361 5.33706 5.47134 5.49022 5.52454 5.55128 5.58669 5.69368 5.71677 5.80027 5.86247 5.96926 6.03503 6.16141 6.25298 6.39669 6.60079 6.71390 6.74926 6.80068 7.24520 7.43382 7.61800 7.77120 7.82073 7.95004 8.02644 8.39919 9.23893 9.85325 10.49163 11.42348 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.004318 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.352098 B = 6483.294793 C = 7975.428204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.178 3.822 3 C -0.181 4.181 4 C 0.140 3.860 5 C 0.568 3.432 6 O -0.536 6.536 7 N -0.571 5.571 8 C 0.074 3.926 9 C 0.049 3.951 10 O -0.355 6.355 11 C 0.048 3.952 12 H 0.066 0.934 13 C 0.163 3.837 14 N -0.594 5.594 15 C -0.216 4.216 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.145 3.855 24 C 0.071 3.929 25 H 0.150 0.850 26 N -0.481 5.481 27 C 0.324 3.676 28 C -0.089 4.089 29 N -0.508 5.508 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.032 0.968 42 H 0.020 0.980 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.736 3.826 1.020 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.030 3.970 3 C -0.204 4.204 4 C -0.006 4.006 5 C 0.353 3.647 6 O -0.413 6.413 7 N -0.301 5.301 8 C -0.048 4.048 9 C -0.029 4.029 10 O -0.273 6.273 11 C -0.012 4.012 12 H 0.084 0.916 13 C 0.038 3.962 14 N -0.320 5.320 15 C -0.345 4.345 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.018 3.982 24 C -0.033 4.033 25 H 0.167 0.833 26 N -0.199 5.199 27 C 0.058 3.942 28 C -0.148 4.148 29 N -0.225 5.225 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.175 0.825 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.098 3.435 0.928 17.464 hybrid contribution 0.051 0.511 -0.606 0.794 sum -17.047 3.946 0.322 17.501 Atomic orbital electron populations 1.20798 0.87253 1.04271 1.03911 1.21830 0.97811 0.87670 0.89668 1.22701 0.94413 1.01235 1.02085 1.21643 0.92002 0.92534 0.94467 1.17866 0.82140 0.86957 0.77690 1.90744 1.70897 1.28610 1.51088 1.47644 1.05313 1.10782 1.66332 1.22499 0.94329 0.87627 1.00342 1.22831 0.94942 0.89547 0.95539 1.88006 1.33089 1.13884 1.92282 1.24274 0.93614 0.88287 0.95021 0.91631 1.22087 1.00258 0.88824 0.85037 1.44313 1.17901 1.67888 1.01907 1.19027 0.96184 1.29065 0.90182 0.90572 1.24732 0.98482 1.01450 0.95789 1.69728 1.29935 1.51013 1.06438 0.86089 0.82105 0.78619 0.78758 1.21694 1.21704 1.20836 1.21232 0.88065 0.95386 0.93492 1.23513 0.97356 0.84825 0.97620 0.83343 1.68547 1.39333 0.98220 1.13842 1.23532 0.86306 0.95053 0.89324 1.20681 1.00483 0.89030 1.04569 1.68088 1.09887 1.30364 1.14117 0.89438 0.89663 0.89878 0.82472 0.88390 0.89967 0.93531 0.88131 0.86141 0.95282 0.93713 0.95043 0.96258 0.89106 0.88535 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.22 36.01 0.37 -0.35 16 2 C 0.18 1.97 6.83 -82.23 -0.56 1.41 16 3 C -0.18 -2.21 9.41 -38.90 -0.37 -2.58 16 4 C 0.14 2.10 6.59 -82.64 -0.54 1.55 16 5 C 0.57 9.34 7.66 -12.05 -0.09 9.25 16 6 O -0.54 -9.34 15.85 5.39 0.09 -9.26 16 7 N -0.57 -9.65 2.72 -165.55 -0.45 -10.10 16 8 C 0.07 1.15 6.40 -3.47 -0.02 1.12 16 9 C 0.05 0.76 7.02 37.43 0.26 1.02 16 10 O -0.35 -7.17 10.09 -35.23 -0.36 -7.53 16 11 C 0.05 0.94 4.12 -24.67 -0.10 0.84 16 12 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 13 C 0.16 3.91 5.47 -2.23 -0.01 3.90 16 14 N -0.59 -15.05 3.40 -169.99 -0.58 -15.63 16 15 C -0.22 -5.97 10.28 -15.06 -0.15 -6.13 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16 19 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.15 3.13 6.82 -3.32 -0.02 3.10 16 24 C 0.07 1.31 2.39 -67.25 -0.16 1.15 16 25 H 0.15 2.67 4.41 -70.30 -0.31 2.36 16 26 N -0.48 -7.37 5.96 -7.32 -0.04 -7.42 16 27 C 0.32 4.45 7.64 -157.31 -1.20 3.25 16 28 C -0.09 -1.04 10.31 36.01 0.37 -0.67 16 29 N -0.51 -6.49 10.25 -7.00 -0.07 -6.56 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.16 1.65 7.76 -52.49 -0.41 1.24 16 34 H 0.10 1.38 7.01 -51.93 -0.36 1.02 16 35 H 0.08 1.33 7.57 -51.93 -0.39 0.93 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.12 3.32 5.86 -51.93 -0.30 3.01 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 42 H 0.02 0.44 7.25 -51.93 -0.38 0.07 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -32.39 361.21 -9.11 -41.49 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.34 Total: 1.96 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: -2.33 Total: 16.52 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -0.58 Total: -65.58 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.27 Total: -16.79 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.39 -9.11 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083223174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.323 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds