Wall clock time and date at job start Tue Mar 31 2020 16:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31880 * 118.95217 * 2 1 4 4 C 1.32133 * 120.96680 * 179.97438 * 3 2 1 5 5 C 1.39967 * 118.92407 * 359.97438 * 4 3 2 6 6 C 1.47826 * 120.93830 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00088 * 234.21196 * 6 5 4 8 8 N 1.34779 * 119.99990 * 54.22008 * 6 5 4 9 9 C 1.47052 * 120.11650 * 5.35714 * 8 6 5 10 10 C 1.54383 * 106.63908 * 129.18331 * 9 8 6 11 11 O 1.42644 * 107.67559 * 57.09262 * 10 9 8 12 12 C 1.42775 * 115.69158 * 294.45455 * 11 10 9 13 13 H 1.09005 * 112.22145 * 290.72732 * 12 11 10 14 14 C 1.55403 * 107.69173 * 166.35079 * 12 11 10 15 15 N 1.47477 * 104.78109 * 281.46880 * 14 12 11 16 16 C 1.36935 * 125.68565 * 155.60328 * 15 14 12 17 17 H 1.08004 * 120.00074 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00349 * 359.97151 * 16 15 14 19 19 N 1.31625 * 119.99682 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00399 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47274 * 59.99745 * 20 18 16 22 22 H 1.48501 * 109.47320 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46787 * 299.99742 * 20 18 16 24 24 C 1.47213 * 108.62505 * 335.59742 * 15 14 12 25 25 C 1.45659 * 120.11506 * 185.63539 * 8 6 5 26 26 H 1.08995 * 109.96185 * 345.48346 * 25 8 6 27 27 C 1.39936 * 118.11868 * 0.02562 * 5 4 3 28 28 C 1.50698 * 120.53413 * 179.97438 * 27 5 4 29 29 N 1.31848 * 118.95136 * 179.72906 * 2 1 3 30 30 H 1.09005 * 109.46782 * 89.99635 * 1 2 3 31 31 H 1.08999 * 109.47142 * 330.00033 * 1 2 3 32 32 H 1.08991 * 109.47216 * 209.99858 * 1 2 3 33 33 H 1.08005 * 120.53457 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.87807 * 249.68687 * 9 8 6 35 35 H 1.08994 * 109.87752 * 10.76058 * 9 8 6 36 36 H 1.09004 * 110.93528 * 297.07011 * 10 9 8 37 37 H 1.09000 * 109.15463 * 176.10188 * 10 9 8 38 38 H 1.09001 * 110.37442 * 40.29359 * 14 12 11 39 39 H 1.08999 * 110.37221 * 162.63900 * 14 12 11 40 40 H 0.96996 * 119.99892 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.95992 * 241.89698 * 24 15 14 42 42 H 1.08999 * 109.96178 * 120.65872 * 24 15 14 43 43 H 1.08998 * 109.47104 * 94.87145 * 28 27 5 44 44 H 1.09004 * 109.46944 * 214.86827 * 28 27 5 45 45 H 1.08999 * 109.47300 * 334.86802 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1856 -0.0001 0.0016 6 6 5.6638 -0.0001 0.0028 7 8 6.2723 -0.6160 -0.8504 8 7 6.3370 0.6828 0.9499 9 6 5.6082 1.3307 2.0506 10 6 6.2896 0.8769 3.3595 11 8 7.6670 1.2390 3.2788 12 6 8.4259 0.5665 2.2737 13 1 8.5687 -0.4897 2.5025 14 6 9.7711 1.3271 2.1096 15 7 9.4384 2.5073 1.2901 16 6 10.1362 3.6852 1.2657 17 1 9.8096 4.4933 0.6278 18 6 11.2634 3.8409 2.0607 19 7 11.6612 2.8563 2.8385 20 14 12.2149 5.4480 2.0280 21 1 11.3239 6.5595 2.4473 22 1 13.3677 5.3599 2.9599 23 1 12.7093 5.7025 0.6510 24 6 8.2312 2.2077 0.5027 25 6 7.7883 0.7866 0.8835 26 1 8.1814 0.0587 0.1739 27 6 3.4660 -1.2003 0.0015 28 6 4.1856 -2.5244 0.0021 29 7 2.1453 -1.1537 0.0055 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3633 -0.8899 0.5138 33 1 3.9816 2.1494 0.0001 34 1 5.6550 2.4140 1.9390 35 1 4.5691 1.0019 2.0514 36 1 6.2006 -0.2014 3.4913 37 1 5.8240 1.3893 4.2014 38 1 10.1534 1.6361 3.0824 39 1 10.5006 0.7014 1.5954 40 1 12.4490 2.9649 3.3938 41 1 8.4606 2.2532 -0.5620 42 1 7.4428 2.9206 0.7444 43 1 4.2820 -2.8850 1.0262 44 1 3.6185 -3.2463 -0.5855 45 1 5.1768 -2.3994 -0.4340 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083226413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:04 Heat of formation + Delta-G solvation = 19.023082 kcal Electronic energy + Delta-G solvation = -29570.176900 eV Core-core repulsion = 25589.578209 eV Total energy + Delta-G solvation = -3980.598691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72797 -40.28542 -38.40022 -35.79739 -35.05334 -34.65106 -33.72603 -32.24492 -29.87028 -29.58648 -29.13313 -27.74045 -27.18952 -24.64106 -24.14207 -23.29470 -22.81283 -21.04136 -20.39587 -18.87530 -18.29180 -17.60936 -17.11218 -16.67881 -16.30771 -15.84584 -15.52441 -15.12405 -15.04674 -14.53788 -14.36541 -14.04091 -13.86891 -13.68178 -13.42101 -13.35614 -12.98749 -12.78955 -12.73070 -12.64018 -12.40900 -12.08669 -11.87967 -11.83725 -11.24548 -11.23266 -11.02890 -10.85620 -10.78071 -10.72289 -10.22071 -10.05238 -9.88310 -9.70495 -9.62209 -9.55828 -9.54599 -8.70931 -8.38923 -6.88871 -5.68175 -3.09786 0.25818 0.69708 2.42322 2.75850 3.31938 3.40832 3.44882 3.46144 3.51351 3.69824 4.04739 4.08259 4.17897 4.47770 4.64258 4.77814 4.79398 4.92805 5.06242 5.12836 5.16039 5.18224 5.23779 5.29150 5.33600 5.43237 5.45876 5.56309 5.57205 5.63976 5.72847 5.77143 5.78073 5.99111 6.05468 6.18206 6.35817 6.54608 6.58651 6.72341 7.17701 7.25378 7.53331 7.67839 7.70559 7.85388 7.96256 8.32541 9.16991 9.78054 10.40441 11.36478 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.003043 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.007209 B = 9198.130172 C = 9460.677957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.332 3.668 3 N -0.522 5.522 4 C 0.190 3.810 5 C -0.240 4.240 6 C 0.571 3.429 7 O -0.526 6.526 8 N -0.588 5.588 9 C 0.070 3.930 10 C 0.049 3.951 11 O -0.353 6.353 12 C 0.054 3.946 13 H 0.071 0.929 14 C 0.160 3.840 15 N -0.594 5.594 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.917 3.083 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.136 3.864 25 C 0.099 3.901 26 H 0.110 0.890 27 C 0.228 3.772 28 C -0.123 4.123 29 N -0.521 5.521 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.175 0.825 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.033 0.967 40 H 0.254 0.746 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.757 -8.546 -1.526 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 N -0.237 5.237 4 C 0.023 3.977 5 C -0.248 4.248 6 C 0.357 3.643 7 O -0.403 6.403 8 N -0.320 5.320 9 C -0.053 4.053 10 C -0.029 4.029 11 O -0.271 6.271 12 C -0.005 4.005 13 H 0.089 0.911 14 C 0.035 3.965 15 N -0.321 5.321 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.747 3.253 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.009 3.991 25 C -0.004 4.004 26 H 0.128 0.872 27 C 0.081 3.919 28 C -0.180 4.180 29 N -0.236 5.236 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.192 0.808 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.138 -8.628 -1.750 21.978 hybrid contribution 1.140 0.771 -0.274 1.403 sum -18.998 -7.857 -2.024 20.658 Atomic orbital electron populations 1.20627 0.85295 1.04444 1.04154 1.23488 0.98447 0.83324 0.88152 1.68332 1.09465 1.29996 1.15907 1.23496 0.89391 0.97707 0.87065 1.21557 0.96155 0.96630 1.10432 1.17854 0.85745 0.79229 0.81489 1.90776 1.68988 1.43015 1.37483 1.47702 1.07561 1.51639 1.25097 1.22834 0.95790 0.99174 0.87484 1.22996 0.84543 0.99287 0.96044 1.88007 1.18723 1.65145 1.55182 1.24204 0.95195 0.96152 0.84955 0.91136 1.22160 0.87573 0.86406 1.00364 1.44315 1.27673 1.13037 1.47055 1.18987 1.05226 0.90131 1.20598 0.90460 1.24770 0.98339 0.98150 0.99144 1.69710 1.26608 1.30756 1.29995 0.86119 0.79255 0.82626 0.77269 1.21156 1.21541 1.21223 1.21347 0.90755 0.91906 0.95073 1.22451 0.77646 1.00259 1.00079 0.87228 1.21826 0.88919 0.95234 0.85892 1.21059 1.01520 0.91401 1.04051 1.68203 1.08997 1.30172 1.16274 0.89290 0.89280 0.89388 0.80803 0.89338 0.90145 0.93100 0.88235 0.85858 0.94971 0.93525 0.95342 0.95422 0.89417 0.89391 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.33 3.57 7.64 -157.07 -1.20 2.37 16 3 N -0.52 -6.00 10.31 -10.39 -0.11 -6.11 16 4 C 0.19 2.18 9.17 -16.77 -0.15 2.02 16 5 C -0.24 -3.02 4.56 -104.69 -0.48 -3.50 16 6 C 0.57 8.42 6.60 -12.34 -0.08 8.34 16 7 O -0.53 -9.21 14.61 5.32 0.08 -9.13 16 8 N -0.59 -8.74 2.70 -165.26 -0.45 -9.18 16 9 C 0.07 0.88 5.52 -3.02 -0.02 0.86 16 10 C 0.05 0.66 7.06 37.88 0.27 0.93 16 11 O -0.35 -6.60 10.12 -35.23 -0.36 -6.96 16 12 C 0.05 1.03 4.09 -24.66 -0.10 0.93 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 14 C 0.16 3.80 5.50 -2.23 -0.01 3.78 16 15 N -0.59 -14.99 3.40 -169.98 -0.58 -15.56 16 16 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 17 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 20 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.14 2.86 6.88 -3.32 -0.02 2.84 16 25 C 0.10 1.78 3.12 -67.25 -0.21 1.57 16 26 H 0.11 2.04 7.03 -51.93 -0.36 1.68 16 27 C 0.23 2.74 6.86 -81.82 -0.56 2.18 16 28 C -0.12 -1.26 9.94 36.00 0.36 -0.90 16 29 N -0.52 -6.09 10.25 -6.67 -0.07 -6.16 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.17 1.72 7.81 -52.48 -0.41 1.31 16 34 H 0.09 1.14 7.54 -51.93 -0.39 0.75 16 35 H 0.08 0.84 5.56 -51.93 -0.29 0.55 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.12 3.34 5.86 -51.93 -0.30 3.03 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.58 7.23 -51.93 -0.38 0.20 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.21 5.71 -51.93 -0.30 0.91 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -32.40 359.68 -8.82 -41.22 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.20 Total: 0.81 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -2.09 Total: 14.63 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.64 Total: -62.84 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.28 Total: -16.10 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.40 -8.82 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083226413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.240 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds