Wall clock time and date at job start Tue Mar 31 2020 16:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38494 * 120.82138 * 2 1 4 4 C 1.39264 * 119.19208 * 180.02562 * 3 2 1 5 5 C 1.48327 * 119.57118 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99925 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00407 * 180.02562 * 5 4 3 8 8 C 1.46504 * 120.00214 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46835 * 180.02562 * 8 7 5 10 10 H 1.09003 * 112.85578 * 43.80331 * 9 8 7 11 11 C 1.53780 * 113.61415 * 175.00290 * 9 8 7 12 12 C 1.53783 * 87.08296 * 139.98054 * 11 9 8 13 13 H 1.09002 * 113.61424 * 89.19857 * 12 11 9 14 14 N 1.46498 * 113.61451 * 220.01814 * 12 11 9 15 15 C 1.36941 * 120.00357 * 204.99699 * 14 12 11 16 16 H 1.08005 * 119.99578 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00384 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46913 * 59.99724 * 19 17 15 21 21 H 1.48498 * 109.47446 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47013 * 300.00233 * 19 17 15 23 23 C 1.53783 * 113.61279 * 272.49921 * 9 8 7 24 24 N 1.32744 * 120.85711 * 0.02562 * 4 3 2 25 25 C 1.31389 * 121.80227 * 359.69000 * 24 4 3 26 26 C 1.39762 * 120.71694 * 0.59835 * 25 24 4 27 27 C 1.48004 * 120.46411 * 179.69493 * 26 25 24 28 28 N 1.34772 * 120.00043 * 353.85154 * 27 26 25 29 29 O 1.21530 * 120.00053 * 173.84637 * 27 26 25 30 30 H 1.09005 * 109.46430 * 263.66114 * 1 2 3 31 31 H 1.08997 * 109.47117 * 23.66044 * 1 2 3 32 32 H 1.09004 * 109.47286 * 143.66646 * 1 2 3 33 33 H 1.07997 * 120.40145 * 0.05525 * 3 2 1 34 34 H 0.97005 * 119.99838 * 359.97438 * 7 5 4 35 35 H 1.08997 * 109.47119 * 299.99933 * 8 7 5 36 36 H 1.09002 * 109.46621 * 60.00367 * 8 7 5 37 37 H 1.08995 * 113.61707 * 254.52875 * 11 9 8 38 38 H 1.09002 * 113.61291 * 25.34780 * 11 9 8 39 39 H 0.97001 * 120.00190 * 25.00070 * 14 12 11 40 40 H 0.97002 * 119.99685 * 180.02562 * 18 17 15 41 41 H 1.08996 * 113.61552 * 334.56666 * 23 9 8 42 42 H 1.09006 * 113.61489 * 105.47662 * 23 9 8 43 43 H 1.08004 * 119.64229 * 180.31219 * 25 24 4 44 44 H 0.96994 * 119.99900 * 0.02562 * 28 27 26 45 45 H 0.97000 * 120.00060 * 179.72254 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6087 1.1497 -0.0005 5 6 4.3770 2.4185 -0.0011 6 8 3.7917 3.4832 -0.0016 7 7 5.7245 2.3903 -0.0022 8 6 6.4834 3.6435 -0.0033 9 6 7.9814 3.3325 -0.0050 10 1 8.2478 2.5365 -0.7004 11 6 8.8698 4.5816 -0.1290 12 6 9.8030 3.9238 0.9012 13 1 10.5691 3.2900 0.4543 14 7 10.3451 4.8632 1.8859 15 6 11.5287 4.5868 2.5168 16 1 12.0628 3.6763 2.2880 17 6 12.0421 5.4766 3.4503 18 7 11.3909 6.5859 3.7294 19 14 13.6569 5.0999 4.3103 20 1 14.7384 4.9758 3.3002 21 1 13.9837 6.1991 5.2537 22 1 13.5322 3.8247 5.0610 23 6 8.5737 3.1474 1.4021 24 7 4.2568 -0.0087 -0.0016 25 6 3.6205 -1.1582 0.0039 26 6 2.2235 -1.2008 -0.0014 27 6 1.5124 -2.4989 -0.0020 28 7 2.2068 -3.6476 -0.1223 29 8 0.3023 -2.5288 0.1062 30 1 -0.3632 -0.1135 1.0215 31 1 -0.3633 0.9412 -0.4124 32 1 -0.3634 -0.8279 -0.6089 33 1 1.6967 2.1359 0.0009 34 1 6.1919 1.5403 -0.0022 35 1 6.2314 4.2201 -0.8933 36 1 6.2328 4.2208 0.8867 37 1 9.3213 4.7003 -1.1140 38 1 8.3935 5.4935 0.2310 39 1 9.8657 5.6811 2.0912 40 1 11.7499 7.2080 4.3815 41 1 8.0171 3.6670 2.1819 42 1 8.7862 2.1081 1.6531 43 1 4.1830 -2.0801 0.0080 44 1 3.1727 -3.6237 -0.2082 45 1 1.7412 -4.4985 -0.1186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086204318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:46 Heat of formation + Delta-G solvation = -9.421064 kcal Electronic energy + Delta-G solvation = -26787.639523 eV Core-core repulsion = 22805.807402 eV Total energy + Delta-G solvation = -3981.832121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43602 -39.99313 -39.03357 -38.31365 -35.03059 -34.68103 -34.12003 -33.25518 -31.89960 -30.26958 -28.43027 -27.76176 -25.38326 -25.07483 -23.84888 -23.29726 -21.95399 -21.06164 -20.58441 -19.12317 -18.50941 -18.14086 -17.63825 -17.03286 -16.69144 -15.87899 -15.78179 -15.65372 -15.35885 -15.16630 -14.71523 -14.66329 -14.15157 -14.07163 -13.59257 -13.42189 -13.25139 -13.14296 -13.08495 -12.89157 -12.67168 -11.92003 -11.82159 -11.40823 -11.24313 -10.83633 -10.75673 -10.62130 -10.46148 -10.35506 -10.20836 -10.12932 -10.04362 -9.85305 -9.82863 -9.79482 -9.49590 -9.07753 -8.86378 -6.96270 -5.78098 -3.06974 -0.23203 0.63177 1.98384 2.67254 2.79464 2.88630 3.41316 3.43080 3.47488 3.48703 3.58299 4.04206 4.15076 4.26100 4.42413 4.58272 4.65750 4.94848 4.96183 4.98908 5.17457 5.20846 5.25804 5.30703 5.46511 5.50761 5.57527 5.79776 5.80680 5.82325 5.92275 5.96874 6.09120 6.17533 6.21572 6.30415 6.35827 6.41833 6.60205 6.65825 6.82554 7.04807 7.11460 7.42594 7.60574 7.68525 7.99094 8.40510 9.51380 10.09832 10.43958 11.44169 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.001821 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.980655 B =15371.351116 C =16034.167436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.018 3.982 3 C -0.123 4.123 4 C 0.113 3.887 5 C 0.563 3.437 6 O -0.530 6.530 7 N -0.700 5.700 8 C 0.129 3.871 9 C -0.127 4.127 10 H 0.089 0.911 11 C -0.142 4.142 12 C 0.166 3.834 13 H 0.076 0.924 14 N -0.713 5.713 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.161 4.161 24 N -0.466 5.466 25 C 0.140 3.860 26 C -0.186 4.186 27 C 0.570 3.430 28 N -0.848 5.848 29 O -0.528 6.528 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.166 0.834 44 H 0.402 0.598 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.275 -19.902 -11.463 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 C -0.144 4.144 4 C -0.024 4.024 5 C 0.347 3.653 6 O -0.406 6.406 7 N -0.350 5.350 8 C 0.006 3.994 9 C -0.147 4.147 10 H 0.108 0.892 11 C -0.182 4.182 12 C 0.054 3.946 13 H 0.094 0.906 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.202 4.202 24 N -0.177 5.177 25 C -0.022 4.022 26 C -0.191 4.191 27 C 0.355 3.645 28 N -0.412 5.412 29 O -0.405 6.405 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.175 0.825 34 H 0.247 0.753 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.183 0.817 44 H 0.232 0.768 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -20.317 -18.906 -11.296 29.964 hybrid contribution 0.464 -0.791 0.613 1.103 sum -19.853 -19.697 -10.683 29.938 Atomic orbital electron populations 1.21139 0.88400 1.04074 1.04409 1.20529 0.97916 0.90816 0.89818 1.22106 0.93713 0.99698 0.98844 1.21466 0.91814 0.92423 0.96707 1.17863 0.82712 0.87110 0.77663 1.90811 1.69757 1.30025 1.50031 1.45921 1.05443 1.11241 1.72394 1.21566 0.90389 0.84983 1.02440 1.22646 0.91808 1.00147 1.00055 0.89231 1.23451 0.97636 0.96646 1.00435 1.21519 0.91680 0.91760 0.89668 0.90647 1.42406 1.24717 1.22663 1.45260 1.19258 0.97928 1.03786 1.16597 0.91152 1.24775 0.99101 0.96928 1.00168 1.69654 1.39731 1.11460 1.37169 0.86258 0.83556 0.77066 0.79237 1.21248 1.21698 1.21265 1.23955 1.00719 1.00955 0.94565 1.67569 1.40525 0.97717 1.11889 1.22906 0.90156 0.96316 0.92774 1.20944 0.95261 0.94338 1.08571 1.18008 0.86765 0.83926 0.75784 1.43744 1.11865 1.08589 1.77042 1.90798 1.13558 1.87113 1.49076 0.89576 0.91174 0.88196 0.82487 0.75251 0.91360 0.90816 0.91963 0.90072 0.78062 0.93407 0.90342 0.92697 0.81731 0.76820 0.75987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.84 36.01 0.32 -0.60 16 2 C 0.02 0.15 5.95 -103.93 -0.62 -0.47 16 3 C -0.12 -1.18 9.30 -39.11 -0.36 -1.54 16 4 C 0.11 1.22 6.75 -82.94 -0.56 0.66 16 5 C 0.56 7.32 7.82 -12.11 -0.09 7.22 16 6 O -0.53 -8.41 16.31 5.37 0.09 -8.32 16 7 N -0.70 -8.30 5.54 -61.09 -0.34 -8.64 16 8 C 0.13 1.67 5.51 -4.04 -0.02 1.65 16 9 C -0.13 -1.67 3.75 -89.81 -0.34 -2.01 16 10 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 11 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 12 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 13 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 14 N -0.71 -17.66 5.40 -52.63 -0.28 -17.94 16 15 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.16 -2.63 7.43 -25.91 -0.19 -2.82 16 24 N -0.47 -4.30 9.52 -9.48 -0.09 -4.39 16 25 C 0.14 0.93 10.69 -17.17 -0.18 0.75 16 26 C -0.19 -1.39 5.90 -104.73 -0.62 -2.00 16 27 C 0.57 4.03 8.00 -12.26 -0.10 3.93 16 28 N -0.85 -2.55 8.83 30.56 0.27 -2.28 16 29 O -0.53 -5.37 14.32 5.34 0.08 -5.30 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.10 0.83 5.94 -51.93 -0.31 0.52 16 33 H 0.16 1.43 7.63 -52.49 -0.40 1.03 16 34 H 0.41 4.26 7.80 -40.82 -0.32 3.94 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.07 7.84 -51.93 -0.41 0.67 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 39 H 0.39 10.18 7.93 -40.82 -0.32 9.86 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.17 0.43 6.46 -52.48 -0.34 0.09 16 44 H 0.40 0.16 6.93 -40.82 -0.28 -0.13 16 45 H 0.41 0.76 8.93 -40.82 -0.36 0.40 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -34.70 379.57 -8.44 -43.14 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.07 Total: 10.32 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.51 Total: -2.15 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.28 Total: -60.64 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.16 Total: -13.62 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.70 -8.44 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086204318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.716 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds