Wall clock time and date at job start Tue Mar 31 2020 16:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38490 * 120.82189 * 2 1 4 4 C 1.39267 * 119.19128 * 180.20448 * 3 2 1 5 5 C 1.48333 * 119.56957 * 179.79514 * 4 3 2 6 6 O 1.21493 * 120.00014 * 359.72039 * 5 4 3 7 7 N 1.34782 * 120.00161 * 179.72727 * 5 4 3 8 8 C 1.46492 * 119.99959 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.78504 * 328.23752 * 8 7 5 10 10 C 1.55161 * 110.72363 * 91.47929 * 8 7 5 11 11 C 1.54906 * 101.58320 * 153.86310 * 10 8 7 12 12 N 1.47427 * 104.83260 * 322.98724 * 11 10 8 13 13 C 1.36935 * 125.64688 * 204.16255 * 12 11 10 14 14 H 1.08004 * 119.99555 * 179.97438 * 13 12 11 15 15 C 1.38814 * 120.00029 * 359.96590 * 13 12 11 16 16 N 1.31614 * 120.00118 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99736 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47044 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46927 * 119.99813 * 17 15 13 20 20 H 1.48495 * 109.47070 * 239.99761 * 17 15 13 21 21 C 1.47024 * 108.70076 * 24.13205 * 12 11 10 22 22 H 1.08995 * 109.88113 * 239.36500 * 21 12 11 23 23 C 1.53002 * 109.87812 * 118.35528 * 21 12 11 24 24 N 1.32742 * 120.85885 * 359.51806 * 4 3 2 25 25 C 1.31382 * 121.80040 * 0.25314 * 24 4 3 26 26 C 1.39765 * 120.71930 * 359.97438 * 25 24 4 27 27 C 1.48008 * 120.46736 * 179.97438 * 26 25 24 28 28 N 1.34784 * 119.99768 * 353.89690 * 27 26 25 29 29 O 1.21522 * 120.00435 * 173.89302 * 27 26 25 30 30 H 1.09007 * 109.46801 * 263.90663 * 1 2 3 31 31 H 1.08999 * 109.47181 * 23.90215 * 1 2 3 32 32 H 1.08998 * 109.47718 * 143.90792 * 1 2 3 33 33 H 1.07997 * 120.40908 * 359.97438 * 3 2 1 34 34 H 0.96994 * 119.99483 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.99857 * 35.78177 * 10 8 7 36 36 H 1.08998 * 111.00225 * 271.94307 * 10 8 7 37 37 H 1.09007 * 110.36197 * 204.15071 * 11 10 8 38 38 H 1.08997 * 110.46027 * 81.87653 * 11 10 8 39 39 H 0.96997 * 119.99669 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.47246 * 61.45544 * 23 21 12 41 41 H 1.08995 * 109.47549 * 301.45051 * 23 21 12 42 42 H 1.09005 * 109.46713 * 181.44809 * 23 21 12 43 43 H 1.08006 * 119.64268 * 180.02562 * 25 24 4 44 44 H 0.97001 * 119.99658 * 359.97438 * 28 27 26 45 45 H 0.96993 * 119.99849 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2165 1.1893 0.0000 4 6 3.6086 1.1497 -0.0043 5 6 4.3770 2.4185 -0.0090 6 8 3.7917 3.4831 -0.0141 7 7 5.7245 2.3903 -0.0076 8 6 6.4834 3.6434 -0.0128 9 1 5.9431 4.4205 -0.5533 10 6 6.7985 4.1004 1.4361 11 6 8.0831 4.9399 1.2250 12 7 8.8320 4.2262 0.1745 13 6 10.1847 4.2934 -0.0268 14 1 10.6402 3.7295 -0.8275 15 6 10.9707 5.0865 0.7980 16 7 10.4156 5.7742 1.7732 17 14 12.8162 5.1776 0.5237 18 1 13.1886 4.3171 -0.6279 19 1 13.2056 6.5821 0.2390 20 1 13.5216 4.7056 1.7422 21 6 7.8857 3.4299 -0.6206 22 1 8.1567 2.3752 -0.5721 23 6 7.9003 3.9043 -2.0751 24 7 4.2568 -0.0087 0.0011 25 6 3.6205 -1.1581 0.0059 26 6 2.2235 -1.2008 0.0058 27 6 1.5123 -2.4988 0.0106 28 7 2.2064 -3.6479 -0.1091 29 8 0.3026 -2.5285 0.1225 30 1 -0.3633 -0.1091 1.0219 31 1 -0.3633 0.9395 -0.4164 32 1 -0.3634 -0.8304 -0.6053 33 1 1.6968 2.1360 -0.0004 34 1 6.1918 1.5403 -0.0033 35 1 6.9929 3.2442 2.0822 36 1 5.9917 4.7144 1.8362 37 1 8.6656 4.9799 2.1455 38 1 7.8300 5.9467 0.8930 39 1 10.9647 6.3286 2.3493 40 1 8.8967 3.7627 -2.4936 41 1 7.6362 4.9610 -2.1153 42 1 7.1782 3.3271 -2.6527 43 1 4.1830 -2.0801 0.0107 44 1 3.1720 -3.6242 -0.1987 45 1 1.7404 -4.4986 -0.1056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088871148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:30 Heat of formation + Delta-G solvation = -9.447991 kcal Electronic energy + Delta-G solvation = -27951.945560 eV Core-core repulsion = 23970.112271 eV Total energy + Delta-G solvation = -3981.833289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.31290 -39.87050 -38.86823 -37.50167 -34.80868 -34.29169 -33.81265 -32.12004 -31.59581 -30.37464 -28.67596 -28.32137 -26.00580 -24.34965 -23.98732 -23.17316 -21.83739 -20.57926 -20.16921 -19.70610 -18.41287 -18.01829 -17.33580 -16.83228 -16.52128 -15.81401 -15.62484 -15.47901 -14.96796 -14.85204 -14.66068 -14.06468 -13.96681 -13.82706 -13.49096 -13.14944 -13.07161 -13.01621 -12.78016 -12.57983 -12.15201 -11.97689 -11.57248 -11.14869 -10.87571 -10.86494 -10.65742 -10.58545 -10.51333 -10.27564 -10.18669 -10.07586 -9.93908 -9.78852 -9.69048 -9.66055 -9.56451 -8.70657 -8.63062 -6.88289 -5.66412 -3.09125 -0.10258 0.75554 2.11564 2.81903 2.90098 3.07800 3.38832 3.44292 3.46807 3.56710 3.73017 4.15458 4.25968 4.39154 4.49233 4.54255 4.80798 5.06528 5.24193 5.29491 5.36438 5.39960 5.41417 5.53358 5.61295 5.68442 5.80642 5.90790 6.07851 6.12500 6.23306 6.25302 6.30172 6.33102 6.50228 6.59273 6.69396 6.74048 6.85192 7.06373 7.23554 7.50879 7.62202 7.67936 7.70067 7.84284 8.23877 8.34434 9.19783 9.80632 10.44370 11.37096 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024622 B = 0.002290 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.901410 B =12224.956770 C =12773.687412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.124 4.124 4 C 0.117 3.883 5 C 0.564 3.436 6 O -0.531 6.531 7 N -0.689 5.689 8 C 0.131 3.869 9 H 0.096 0.904 10 C -0.153 4.153 11 C 0.153 3.847 12 N -0.595 5.595 13 C -0.219 4.219 14 H 0.078 0.922 15 C -0.011 4.011 16 N -0.921 5.921 17 Si 0.914 3.086 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.155 3.845 22 H 0.038 0.962 23 C -0.155 4.155 24 N -0.465 5.465 25 C 0.140 3.860 26 C -0.188 4.188 27 C 0.571 3.429 28 N -0.849 5.849 29 O -0.529 6.529 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.157 0.843 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.015 0.985 39 H 0.252 0.748 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.165 0.835 44 H 0.402 0.598 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.089 -17.373 -3.830 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 C -0.145 4.145 4 C -0.021 4.021 5 C 0.347 3.653 6 O -0.407 6.407 7 N -0.339 5.339 8 C 0.027 3.973 9 H 0.114 0.886 10 C -0.193 4.193 11 C 0.028 3.972 12 N -0.320 5.320 13 C -0.347 4.347 14 H 0.096 0.904 15 C -0.206 4.206 16 N -0.569 5.569 17 Si 0.745 3.255 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.047 3.953 22 H 0.055 0.945 23 C -0.215 4.215 24 N -0.176 5.176 25 C -0.022 4.022 26 C -0.193 4.193 27 C 0.356 3.644 28 N -0.413 5.413 29 O -0.407 6.407 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.175 0.825 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.182 0.818 44 H 0.232 0.768 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -17.129 -16.252 -3.666 23.895 hybrid contribution 0.733 -0.744 -0.206 1.064 sum -16.396 -16.995 -3.871 23.930 Atomic orbital electron populations 1.21123 0.88484 1.04017 1.04305 1.20510 0.97843 0.90839 0.89962 1.22105 0.93745 0.99655 0.98956 1.21542 0.91811 0.92487 0.96220 1.17825 0.82756 0.87003 0.77692 1.90793 1.69694 1.29935 1.50278 1.45938 1.05338 1.10891 1.71704 1.22277 0.91856 0.84829 0.98340 0.88553 1.23417 1.00303 1.00786 0.94763 1.21954 0.88114 0.91395 0.95781 1.44494 1.02414 1.52119 1.33002 1.19070 0.80752 1.22841 1.12032 0.90379 1.24789 0.98255 0.99382 0.98222 1.69799 1.33302 1.33196 1.20637 0.86008 0.84923 0.77325 0.77283 1.20552 1.21786 1.21779 1.20993 0.87894 0.95456 0.90947 0.94458 1.22242 1.00782 1.00901 0.97560 1.67590 1.40523 0.97723 1.11782 1.22904 0.90117 0.96348 0.92799 1.20925 0.95264 0.94269 1.08889 1.18021 0.86738 0.83935 0.75711 1.43749 1.11903 1.08561 1.77080 1.90790 1.13600 1.87150 1.49132 0.89657 0.91209 0.88280 0.82493 0.75457 0.91855 0.91901 0.87277 0.96658 0.93741 0.92632 0.92908 0.94344 0.81818 0.76808 0.76064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.83 36.00 0.32 -0.71 16 2 C 0.02 0.16 5.95 -103.94 -0.62 -0.46 16 3 C -0.12 -1.36 9.30 -39.11 -0.36 -1.72 16 4 C 0.12 1.46 6.75 -82.94 -0.56 0.90 16 5 C 0.56 8.66 7.82 -12.10 -0.09 8.56 16 6 O -0.53 -9.56 15.96 5.37 0.09 -9.47 16 7 N -0.69 -10.59 5.17 -52.82 -0.27 -10.86 16 8 C 0.13 2.39 2.84 -66.10 -0.19 2.20 16 9 H 0.10 1.85 7.26 -51.93 -0.38 1.48 16 10 C -0.15 -3.02 6.77 -24.58 -0.17 -3.18 16 11 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 12 N -0.60 -14.68 3.13 -162.57 -0.51 -15.19 16 13 C -0.22 -5.89 9.87 -15.06 -0.15 -6.04 16 14 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 15 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 16 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 17 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.16 3.10 3.48 -66.95 -0.23 2.87 16 22 H 0.04 0.73 7.72 -51.93 -0.40 0.33 16 23 C -0.16 -2.87 9.14 37.16 0.34 -2.54 16 24 N -0.46 -5.09 9.52 -9.48 -0.09 -5.18 16 25 C 0.14 1.12 10.69 -17.17 -0.18 0.93 16 26 C -0.19 -1.62 5.90 -104.73 -0.62 -2.24 16 27 C 0.57 4.57 8.00 -12.25 -0.10 4.47 16 28 N -0.85 -3.31 8.83 30.57 0.27 -3.04 16 29 O -0.53 -5.82 14.32 5.35 0.08 -5.74 16 30 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.10 0.91 5.95 -51.93 -0.31 0.61 16 33 H 0.16 1.64 7.63 -52.49 -0.40 1.24 16 34 H 0.41 5.70 7.69 -40.82 -0.31 5.38 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.11 2.95 5.87 -51.92 -0.31 2.65 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.05 1.06 8.03 -51.93 -0.42 0.64 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.16 0.64 6.46 -52.48 -0.34 0.30 16 44 H 0.40 0.55 6.93 -40.82 -0.28 0.27 16 45 H 0.41 1.08 8.93 -40.82 -0.36 0.72 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -33.34 370.12 -8.06 -41.40 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.01 Total: 5.36 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -2.72 Total: 6.33 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.04 Total: -60.17 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.16 Total: -15.22 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.34 -8.06 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088871148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.955 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds