Wall clock time and date at job start Tue Mar 31 2020 17:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39834 * 126.45525 * 2 1 4 4 C 1.35453 * 107.86668 * 179.97438 * 3 2 1 5 5 N 1.35539 * 108.87124 * 359.73869 * 4 3 2 6 6 H 0.96993 * 125.68415 * 180.28600 * 5 4 3 7 7 C 1.37659 * 108.64139 * 0.43207 * 5 4 3 8 8 C 1.46676 * 126.23384 * 179.83369 * 7 5 4 9 9 O 1.21690 * 119.99815 * 179.69213 * 8 7 5 10 10 N 1.34777 * 119.99963 * 359.68660 * 8 7 5 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.85117 * 37.33582 * 11 10 8 13 13 C 1.54629 * 110.97275 * 273.55292 * 11 10 8 14 14 C 1.51281 * 104.19476 * 266.67727 * 13 11 10 15 15 O 1.21273 * 124.94365 * 163.78184 * 14 13 11 16 16 N 1.34428 * 110.11341 * 343.74472 * 14 13 11 17 17 C 1.46495 * 124.34806 * 179.57177 * 16 14 13 18 18 C 1.53949 * 113.74340 * 38.71611 * 17 16 14 19 19 N 1.47817 * 86.03746 * 222.08329 * 18 17 16 20 20 C 1.36930 * 134.45565 * 204.63925 * 19 18 17 21 21 H 1.08000 * 120.00542 * 179.86703 * 20 19 18 22 22 C 1.38814 * 120.00061 * 359.87515 * 20 19 18 23 23 N 1.31622 * 120.00267 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46638 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47317 * 119.99433 * 24 22 20 27 27 H 1.48493 * 109.47092 * 239.99909 * 24 22 20 28 28 C 1.47574 * 91.04939 * 24.54947 * 19 18 17 29 29 C 1.46758 * 111.30026 * 359.59359 * 16 14 13 30 30 H 1.09003 * 109.47218 * 270.01675 * 1 2 3 31 31 H 1.08999 * 109.47593 * 30.01564 * 1 2 3 32 32 H 1.09001 * 109.47263 * 150.02313 * 1 2 3 33 33 H 1.07999 * 126.06908 * 359.97438 * 3 2 1 34 34 H 1.07997 * 125.56874 * 180.02562 * 4 3 2 35 35 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 36 36 H 1.09005 * 110.48493 * 25.34974 * 13 11 10 37 37 H 1.08996 * 110.48820 * 147.99757 * 13 11 10 38 38 H 1.09002 * 112.94348 * 170.30924 * 17 16 14 39 39 H 1.09004 * 113.76908 * 336.34851 * 18 17 16 40 40 H 1.09000 * 113.77063 * 107.74598 * 18 17 16 41 41 H 0.96998 * 120.00317 * 180.02562 * 23 22 20 42 42 H 1.09004 * 113.77095 * 221.15224 * 28 19 18 43 43 H 1.09004 * 113.77113 * 89.75336 * 28 19 18 44 44 H 1.09000 * 110.24369 * 258.01407 * 29 16 14 45 45 H 1.09005 * 110.24446 * 136.01747 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3378 1.1247 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6284 -0.6624 0.0068 6 1 4.4190 -1.2243 0.0124 7 6 2.3263 -1.1089 0.0004 8 6 1.8899 -2.5092 0.0006 9 8 0.7027 -2.7766 0.0002 10 7 2.8037 -3.4999 0.0010 11 6 2.3680 -4.8985 0.0017 12 1 1.4792 -5.0283 -0.6160 13 6 2.1180 -5.3996 1.4430 14 6 3.4314 -6.0308 1.8493 15 8 3.7521 -6.2948 2.9887 16 7 4.1909 -6.2573 0.7636 17 6 5.5296 -6.8512 0.8005 18 6 5.6761 -7.9858 1.8306 19 7 6.9859 -7.3828 2.1558 20 6 8.1527 -7.8565 2.6936 21 1 8.9927 -7.1919 2.8316 22 6 8.2560 -9.1910 3.0613 23 7 7.2323 -10.0011 2.8936 24 14 9.8480 -9.8374 3.7944 25 1 10.8386 -8.7342 3.8769 26 1 9.5858 -10.3707 5.1552 27 1 10.3853 -10.9212 2.9331 28 6 6.5320 -6.0667 1.6663 29 6 3.5069 -5.8327 -0.4635 30 1 -0.3634 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 2.0135 2.1549 -0.0004 34 1 4.4972 1.3253 0.0011 35 1 3.7500 -3.2868 0.0016 36 1 1.8765 -4.5645 2.1007 37 1 1.3185 -6.1403 1.4561 38 1 5.9092 -7.1052 -0.1892 39 1 4.9544 -7.9349 2.6460 40 1 5.7465 -8.9779 1.3845 41 1 7.3043 -10.9336 3.1508 42 1 7.2845 -5.5292 1.0892 43 1 6.0623 -5.4508 2.4333 44 1 3.0963 -6.6974 -0.9849 45 1 4.1966 -5.2926 -1.1122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094729721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:45 Heat of formation + Delta-G solvation = 45.601884 kcal Electronic energy + Delta-G solvation = -28414.611223 eV Core-core repulsion = 24435.165075 eV Total energy + Delta-G solvation = -3979.446147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67682 -40.65978 -39.11169 -37.28101 -36.41931 -34.17572 -32.76089 -32.20805 -30.81425 -29.64885 -27.67950 -27.37032 -26.79948 -24.79512 -23.58117 -23.12554 -21.62522 -20.82809 -20.52334 -19.50970 -18.91735 -18.32926 -17.07221 -16.72190 -16.35320 -16.06643 -15.59010 -15.18660 -14.92659 -14.55544 -14.28332 -14.04359 -13.96981 -13.90808 -13.51445 -13.39040 -13.24349 -12.94388 -12.87074 -12.61421 -12.50830 -11.98226 -11.86724 -11.83250 -11.73928 -11.45923 -11.39929 -10.88318 -10.73622 -10.27526 -10.19528 -9.99477 -9.68905 -9.54600 -9.22634 -9.08617 -8.70562 -8.46056 -8.23879 -6.85923 -5.76062 -3.08415 1.16148 2.42922 2.69786 2.80790 2.90833 3.09088 3.20892 3.39252 3.44362 3.46838 4.16976 4.39686 4.47569 4.56271 4.70801 4.71448 4.89329 4.97786 5.01979 5.19022 5.31136 5.36088 5.49269 5.49466 5.53113 5.60941 5.62364 5.67185 5.67615 5.80959 5.87716 6.06402 6.16174 6.21131 6.40753 6.44511 6.51666 6.64842 6.82121 7.01004 7.18079 7.25097 7.44851 7.54955 7.59030 7.87196 7.97254 8.52604 9.04431 9.70753 10.59202 11.41149 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002509 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.809075 B =11156.071988 C =11934.101248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.071 4.071 3 C -0.214 4.214 4 C 0.029 3.971 5 N -0.541 5.541 6 H 0.417 0.583 7 C -0.064 4.064 8 C 0.593 3.407 9 O -0.523 6.523 10 N -0.723 5.723 11 C 0.137 3.863 12 H 0.117 0.883 13 C -0.167 4.167 14 C 0.512 3.488 15 O -0.508 6.508 16 N -0.610 5.610 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.221 4.221 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.918 5.918 24 Si 0.913 3.087 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.112 3.888 29 C 0.095 3.905 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.171 0.829 35 H 0.397 0.603 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.253 0.747 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.088 0.912 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 19.879 -12.267 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.238 4.238 4 C -0.107 4.107 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.176 4.176 8 C 0.382 3.618 9 O -0.399 6.399 10 N -0.375 5.375 11 C 0.032 3.968 12 H 0.135 0.865 13 C -0.208 4.208 14 C 0.298 3.702 15 O -0.383 6.383 16 N -0.346 5.346 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.349 4.349 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.565 5.565 24 Si 0.744 3.256 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.015 4.015 29 C -0.029 4.029 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.231 0.769 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.106 0.894 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.739 19.088 -11.511 25.192 hybrid contribution 1.888 -0.434 0.503 2.001 sum -9.851 18.654 -11.008 23.794 Atomic orbital electron populations 1.20355 0.89244 1.02886 1.02315 1.19978 0.95933 0.90759 1.01347 1.20821 0.91832 0.98864 1.12323 1.22045 0.99650 0.82942 1.06044 1.41980 1.07197 1.07384 1.57109 0.74565 1.20175 0.83825 0.93405 1.20199 1.17024 0.85801 0.82956 0.76048 1.90821 1.15837 1.83231 1.50028 1.45919 1.09520 1.05782 1.76288 1.21861 0.98302 0.79773 0.96893 0.86475 1.22834 0.97760 1.02831 0.97391 1.20712 0.85883 0.78603 0.84997 1.90790 1.75465 1.51859 1.20166 1.48548 1.17492 1.62088 1.06455 1.24062 0.78523 0.97314 1.00540 1.22789 0.86813 0.94681 0.93033 1.45706 1.09832 1.03937 1.73589 1.19016 0.88396 0.93127 1.34365 0.90179 1.24813 0.97860 0.96193 1.01590 1.69837 1.29404 1.04612 1.52654 0.86028 0.82341 0.78655 0.78609 1.20474 1.21682 1.21681 1.22906 0.93415 0.90855 0.94363 1.22333 0.94098 0.97965 0.88501 0.91460 0.92032 0.90100 0.83941 0.81131 0.76932 0.88082 0.86927 0.87676 0.92569 0.91134 0.93650 0.94143 0.94445 0.89403 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.83 36.00 0.35 -0.49 16 2 C -0.07 -0.72 6.21 -104.16 -0.65 -1.36 16 3 C -0.21 -1.72 10.76 -39.98 -0.43 -2.15 16 4 C 0.03 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -3.81 5.99 -9.39 -0.06 -3.86 16 6 H 0.42 1.91 8.19 -40.82 -0.33 1.58 16 7 C -0.06 -0.63 7.06 -81.98 -0.58 -1.21 16 8 C 0.59 6.42 7.79 -12.85 -0.10 6.32 16 9 O -0.52 -7.03 14.54 5.20 0.08 -6.95 16 10 N -0.72 -6.35 5.15 -53.53 -0.28 -6.62 16 11 C 0.14 1.25 3.43 -66.30 -0.23 1.02 16 12 H 0.12 0.98 7.72 -51.93 -0.40 0.58 16 13 C -0.17 -1.98 6.58 -26.74 -0.18 -2.15 16 14 C 0.51 8.44 7.42 -10.86 -0.08 8.36 16 15 O -0.51 -11.24 14.61 5.56 0.08 -11.16 16 16 N -0.61 -8.84 3.16 -166.63 -0.53 -9.36 16 17 C 0.10 1.79 4.81 -70.13 -0.34 1.46 16 18 C 0.15 3.76 6.90 -2.83 -0.02 3.74 16 19 N -0.60 -16.03 3.70 -177.85 -0.66 -16.69 16 20 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 21 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -28.00 11.39 55.49 0.63 -27.37 16 24 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C 0.11 2.34 8.44 -2.97 -0.03 2.32 16 29 C 0.10 0.88 6.96 -3.13 -0.02 0.86 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.86 6.48 -51.93 -0.34 0.52 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.40 2.83 7.70 -40.82 -0.31 2.51 16 36 H 0.10 1.29 8.09 -51.93 -0.42 0.87 16 37 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 39 H 0.06 1.54 5.72 -51.93 -0.30 1.24 16 40 H 0.07 1.89 7.17 -51.93 -0.37 1.51 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.04 0.84 7.25 -51.93 -0.38 0.46 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -37.88 371.15 -9.10 -46.99 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.20 Total: 2.07 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -2.75 Total: 9.84 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.88 Total: -63.90 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.16 Total: -18.11 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.88 -9.10 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094729721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.587 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds