Wall clock time and date at job start Tue Mar 31 2020 17:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32213 * 120.50487 * 2 1 4 4 C 1.31915 * 121.13861 * 179.97438 * 3 2 1 5 5 N 1.31753 * 122.19787 * 0.02562 * 4 3 2 6 6 C 1.32743 * 120.86920 * 359.68596 * 5 4 3 7 7 O 1.35283 * 120.61742 * 180.30391 * 6 5 4 8 8 C 1.39764 * 120.50930 * 179.97438 * 2 1 3 9 9 C 1.47531 * 120.98346 * 359.97438 * 8 2 1 10 10 O 1.21589 * 120.00408 * 90.00314 * 9 8 2 11 11 N 1.34778 * 119.99783 * 270.00072 * 9 8 2 12 12 C 1.46503 * 119.99856 * 179.97438 * 11 9 8 13 13 C 1.54149 * 112.65434 * 298.02606 * 12 11 9 14 14 C 1.54837 * 104.34691 * 260.68068 * 13 12 11 15 15 C 1.56520 * 103.25299 * 322.20673 * 14 13 12 16 16 C 1.54144 * 103.55255 * 37.28603 * 15 14 13 17 17 H 1.09003 * 111.89001 * 100.37143 * 16 15 14 18 18 C 1.54462 * 108.80212 * 224.56335 * 16 15 14 19 19 N 1.48345 * 104.30355 * 139.52374 * 18 16 15 20 20 C 1.36935 * 128.20105 * 138.21285 * 19 18 16 21 21 H 1.08004 * 119.99166 * 344.14412 * 20 19 18 22 22 C 1.38806 * 120.00495 * 164.13602 * 20 19 18 23 23 N 1.31622 * 119.99921 * 350.53818 * 22 20 19 24 24 Si 1.86800 * 120.00088 * 170.53330 * 22 20 19 25 25 H 1.48503 * 109.47054 * 90.00514 * 24 22 20 26 26 H 1.48505 * 109.47089 * 210.00575 * 24 22 20 27 27 H 1.48494 * 109.47084 * 330.00163 * 24 22 20 28 28 C 1.48340 * 103.60500 * 318.22790 * 19 18 16 29 29 H 1.09002 * 109.46550 * 270.01511 * 1 2 3 30 30 H 1.08992 * 109.47669 * 30.01872 * 1 2 3 31 31 H 1.09004 * 109.47174 * 150.02260 * 1 2 3 32 32 H 1.08001 * 118.90000 * 180.02562 * 4 3 2 33 33 H 0.96693 * 114.00427 * 270.26154 * 7 6 5 34 34 H 0.97000 * 120.00082 * 0.02562 * 11 9 8 35 35 H 1.08997 * 110.45748 * 19.39225 * 13 12 11 36 36 H 1.08998 * 110.46000 * 141.96823 * 13 12 11 37 37 H 1.08998 * 110.76330 * 80.08109 * 14 13 12 38 38 H 1.09004 * 110.76202 * 203.27939 * 14 13 12 39 39 H 1.09000 * 110.39121 * 279.05022 * 15 14 13 40 40 H 1.09001 * 111.29231 * 155.96047 * 15 14 13 41 41 H 1.09002 * 110.46264 * 20.81978 * 18 16 15 42 42 H 1.09000 * 110.57614 * 258.28216 * 18 16 15 43 43 H 0.97004 * 120.00147 * 179.97438 * 23 22 20 44 44 H 1.09001 * 110.46646 * 160.47668 * 28 19 18 45 45 H 1.09002 * 110.46928 * 283.06855 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1781 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0466 0.0005 6 6 3.6234 -1.1434 0.0063 7 8 4.3619 -2.2769 0.0125 8 6 2.2166 -1.2041 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2219 -3.0356 -1.0508 11 7 1.1913 -3.0919 1.1694 12 6 0.4916 -4.3791 1.1706 13 6 -0.8957 -4.3013 0.5029 14 6 -1.8857 -4.1854 1.6877 15 6 -1.2622 -5.1286 2.7700 16 6 0.2551 -4.9106 2.6083 17 1 0.6512 -4.2328 3.3645 18 6 0.9614 -6.2840 2.6378 19 7 2.0065 -6.1813 1.5900 20 6 3.3013 -6.6241 1.6392 21 1 3.7482 -6.8815 2.5881 22 6 4.0393 -6.7423 0.4695 23 7 3.4471 -6.6103 -0.6985 24 14 5.8731 -7.0886 0.5532 25 1 6.1003 -8.5561 0.5510 26 1 6.5456 -6.4818 -0.6236 27 1 6.4311 -6.5030 1.7985 28 6 1.3169 -5.4850 0.4764 29 1 -0.3632 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 4.0087 2.1049 0.0009 33 1 4.5804 -2.6087 -0.8690 34 1 1.4227 -2.6650 2.0091 35 1 -0.9620 -3.4210 -0.1364 36 1 -1.0933 -5.2064 -0.0715 37 1 -1.9249 -3.1616 2.0598 38 1 -2.8789 -4.5271 1.3962 39 1 -1.5219 -6.1670 2.5639 40 1 -1.5829 -4.8467 3.7729 41 1 0.2569 -7.0800 2.3967 42 1 1.4154 -6.4604 3.6129 43 1 3.9629 -6.6926 -1.5159 44 1 2.0438 -5.0459 -0.2069 45 1 0.6601 -6.1736 -0.0552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098990385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:45 Heat of formation + Delta-G solvation = 6.440801 kcal Electronic energy + Delta-G solvation = -30433.199861 eV Core-core repulsion = 26452.055561 eV Total energy + Delta-G solvation = -3981.144299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41065 -39.90766 -37.95666 -37.58443 -34.33836 -34.25199 -33.28641 -31.88884 -31.51481 -29.36583 -28.69454 -27.69087 -25.29399 -24.67029 -24.20311 -22.86340 -21.61112 -20.31103 -19.92289 -18.85561 -18.72705 -18.06158 -17.40280 -16.62093 -16.30174 -15.84335 -15.17837 -14.88277 -14.76690 -14.34102 -14.23822 -13.83678 -13.67408 -13.47696 -13.33930 -12.97695 -12.72111 -12.65427 -12.42695 -12.08013 -11.70376 -11.44056 -11.26519 -11.19765 -11.01429 -10.83062 -10.77001 -10.57818 -10.44305 -10.35253 -10.08219 -10.00693 -9.80630 -9.70897 -9.61887 -9.43276 -9.28468 -8.61158 -8.45212 -6.79118 -5.71338 -3.07420 0.53813 0.80316 2.79836 3.24345 3.39160 3.41271 3.46398 3.48387 3.61988 3.82911 4.15643 4.50186 4.69969 4.83928 4.89312 4.99206 5.09680 5.18085 5.22389 5.32378 5.50120 5.53710 5.61657 5.71449 5.75443 5.76253 5.87011 5.93096 6.02068 6.07704 6.09910 6.16665 6.30226 6.48565 6.53441 6.55932 6.71072 6.72373 6.80103 7.03193 7.39314 7.42774 7.58784 7.81823 7.87520 7.93432 8.30101 8.55719 9.15234 9.79737 10.57198 11.40669 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.006139 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.970660 B = 4559.667044 C = 6780.387942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.221 3.779 3 N -0.531 5.531 4 C 0.329 3.671 5 N -0.544 5.544 6 C 0.403 3.597 7 O -0.459 6.459 8 C -0.245 4.245 9 C 0.577 3.423 10 O -0.515 6.515 11 N -0.686 5.686 12 C 0.148 3.852 13 C -0.117 4.117 14 C -0.123 4.123 15 C -0.116 4.116 16 C -0.108 4.108 17 H 0.074 0.926 18 C 0.128 3.872 19 N -0.595 5.595 20 C -0.226 4.226 21 H 0.073 0.927 22 C -0.001 4.001 23 N -0.907 5.907 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.157 3.843 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.203 0.797 33 H 0.418 0.582 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.046 0.954 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 13.409 3.566 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.075 3.925 3 N -0.248 5.248 4 C 0.041 3.959 5 N -0.270 5.270 6 C 0.215 3.785 7 O -0.268 6.268 8 C -0.254 4.254 9 C 0.360 3.640 10 O -0.391 6.391 11 N -0.334 5.334 12 C 0.060 3.940 13 C -0.156 4.156 14 C -0.161 4.161 15 C -0.154 4.154 16 C -0.128 4.128 17 H 0.092 0.908 18 C 0.001 3.999 19 N -0.318 5.318 20 C -0.354 4.354 21 H 0.090 0.910 22 C -0.198 4.198 23 N -0.553 5.553 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.031 3.969 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.219 0.781 33 H 0.280 0.720 34 H 0.227 0.773 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.122 0.878 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.823 13.714 3.230 16.115 hybrid contribution 1.066 -0.857 -0.018 1.368 sum -6.757 12.857 3.212 14.875 Atomic orbital electron populations 1.20899 0.87141 1.04822 1.04147 1.21762 0.97617 0.86090 0.87057 1.68262 1.10219 1.29454 1.16835 1.24897 0.86293 0.96136 0.88578 1.68091 1.42728 0.98777 1.17378 1.19551 0.85883 0.86060 0.86992 1.84701 1.72109 1.35196 1.34770 1.21985 0.95237 0.97282 1.10916 1.17358 0.78783 0.83082 0.84782 1.90861 1.53373 1.63859 1.30995 1.45752 1.58362 1.21976 1.07314 1.22155 0.91964 0.83721 0.96111 1.22597 0.93319 1.02670 0.96964 1.22807 0.98244 0.99094 0.95938 1.22713 0.94480 1.00018 0.98163 1.23010 0.95219 0.99394 0.95206 0.90780 1.21927 0.91516 0.92641 0.93832 1.45109 1.07219 1.66207 1.13241 1.18895 0.85511 1.38254 0.92735 0.90951 1.24846 0.98282 1.01414 0.95290 1.69918 1.34091 1.54901 0.96415 0.86225 0.85337 0.77749 0.77036 1.21645 1.21626 1.20679 1.22026 0.94658 0.89405 0.90846 0.89071 0.89222 0.89526 0.78054 0.71984 0.77326 0.91524 0.90492 0.92269 0.92002 0.91144 0.91990 0.95475 0.93541 0.93735 0.87802 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.85 36.01 0.35 -0.80 16 2 C 0.22 2.91 6.86 -81.86 -0.56 2.35 16 3 N -0.53 -6.69 10.36 -10.52 -0.11 -6.79 16 4 C 0.33 3.92 12.27 -92.09 -1.13 2.79 16 5 N -0.54 -7.99 10.45 -14.31 -0.15 -8.14 16 6 C 0.40 6.55 7.85 -16.18 -0.13 6.43 16 7 O -0.46 -8.13 13.10 -17.54 -0.23 -8.36 16 8 C -0.24 -3.83 5.67 -104.56 -0.59 -4.42 16 9 C 0.58 10.27 4.60 -12.47 -0.06 10.21 16 10 O -0.52 -10.92 14.63 5.29 0.08 -10.84 16 11 N -0.69 -11.60 5.27 -46.35 -0.24 -11.84 16 12 C 0.15 2.68 0.91 -129.34 -0.12 2.56 16 13 C -0.12 -1.86 5.69 -25.16 -0.14 -2.00 16 14 C -0.12 -1.54 6.93 -23.87 -0.17 -1.70 16 15 C -0.12 -1.52 6.51 -24.24 -0.16 -1.68 16 16 C -0.11 -1.76 3.66 -88.15 -0.32 -2.08 16 17 H 0.07 1.13 7.74 -51.93 -0.40 0.73 16 18 C 0.13 2.56 6.75 -2.26 -0.02 2.55 16 19 N -0.59 -14.94 3.37 -168.44 -0.57 -15.51 16 20 C -0.23 -6.26 10.37 -15.06 -0.16 -6.42 16 21 H 0.07 1.96 7.85 -52.48 -0.41 1.55 16 22 C 0.00 -0.02 5.40 -17.43 -0.09 -0.12 16 23 N -0.91 -26.68 10.89 55.49 0.60 -26.08 16 24 Si 0.91 22.21 29.56 -169.99 -5.03 17.19 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.16 3.77 4.79 -2.26 -0.01 3.76 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.98 7.18 -51.93 -0.37 0.61 16 32 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.42 6.18 9.06 45.56 0.41 6.59 16 34 H 0.39 5.95 8.31 -40.82 -0.34 5.61 16 35 H 0.07 1.07 6.87 -51.93 -0.36 0.72 16 36 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.95 7.19 -51.93 -0.37 0.58 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.55 7.21 -51.93 -0.37 0.17 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.10 2.87 4.95 -51.93 -0.26 2.62 16 45 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -34.03 363.04 -8.79 -42.82 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.32 Total: 10.65 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -3.30 Total: 11.42 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -0.47 Total: -68.36 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.15 Total: -19.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.03 -8.79 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098990385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.263 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds