Wall clock time and date at job start Tue Mar 31 2020 17:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39836 * 126.45956 * 2 1 4 4 C 1.35453 * 107.86404 * 180.02562 * 3 2 1 5 5 N 1.35527 * 108.87406 * 359.73288 * 4 3 2 6 6 H 0.97001 * 125.67781 * 180.30371 * 5 4 3 7 7 C 1.37648 * 108.64438 * 0.43558 * 5 4 3 8 8 C 1.46673 * 126.23550 * 179.83417 * 7 5 4 9 9 O 1.21697 * 120.00015 * 179.69038 * 8 7 5 10 10 N 1.34771 * 120.00246 * 359.68314 * 8 7 5 11 11 C 1.46503 * 120.00443 * 180.02562 * 10 8 7 12 12 H 1.09002 * 115.51464 * 350.58842 * 11 10 8 13 13 C 1.52999 * 117.44544 * 205.16600 * 11 10 8 14 14 H 1.09001 * 119.52544 * 5.68798 * 13 11 10 15 15 C 1.54377 * 118.12648 * 160.73121 * 13 11 10 16 16 N 1.48563 * 104.59920 * 87.23046 * 15 13 11 17 17 C 1.46891 * 111.00249 * 200.95980 * 16 15 13 18 18 C 1.50696 * 109.47274 * 170.00136 * 17 16 15 19 19 O 1.21295 * 119.99873 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00261 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00188 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00157 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99987 * 179.97438 * 21 20 18 24 24 N 1.31401 * 120.00105 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99636 * 179.97438 * 23 21 20 26 26 H 1.48488 * 109.47533 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47146 * 120.00293 * 25 23 21 28 28 H 1.48500 * 109.46787 * 239.99650 * 25 23 21 29 29 C 1.48565 * 104.21676 * 320.51624 * 16 15 13 30 30 C 1.53002 * 117.44339 * 136.00508 * 11 10 8 31 31 H 1.09001 * 119.52495 * 355.87427 * 30 11 10 32 32 H 1.08999 * 109.47294 * 269.95895 * 1 2 3 33 33 H 1.08999 * 109.47013 * 29.95969 * 1 2 3 34 34 H 1.08997 * 109.47325 * 149.95830 * 1 2 3 35 35 H 1.08003 * 126.06870 * 0.02562 * 3 2 1 36 36 H 1.08006 * 125.55837 * 180.02562 * 4 3 2 37 37 H 0.97006 * 119.99751 * 0.02562 * 10 8 7 38 38 H 1.09001 * 110.41153 * 206.00927 * 15 13 11 39 39 H 1.08997 * 110.41183 * 328.44827 * 15 13 11 40 40 H 1.08998 * 109.47308 * 290.00119 * 17 16 15 41 41 H 1.09002 * 109.47132 * 49.99802 * 17 16 15 42 42 H 0.97001 * 119.99502 * 359.97438 * 20 18 17 43 43 H 0.97004 * 120.00107 * 180.02562 * 24 23 21 44 44 H 1.08999 * 110.40602 * 158.25894 * 29 16 15 45 45 H 1.08995 * 110.41077 * 280.58700 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6927 -0.0006 5 7 3.6283 -0.6625 0.0050 6 1 4.4190 -1.2244 0.0101 7 6 2.3263 -1.1089 -0.0006 8 6 1.8898 -2.5092 -0.0008 9 8 0.7026 -2.7765 -0.0004 10 7 2.8035 -3.4999 -0.0015 11 6 2.3677 -4.8986 -0.0022 12 1 1.3015 -5.0582 0.1587 13 6 3.3312 -5.9378 0.5744 14 1 4.2564 -5.6084 1.0473 15 6 2.7559 -7.3047 1.0031 16 7 2.7892 -8.1291 -0.2323 17 6 1.8491 -9.2540 -0.1402 18 6 1.7275 -9.9187 -1.4871 19 8 2.3614 -9.4965 -2.4312 20 7 0.9137 -10.9816 -1.6431 21 6 0.8027 -11.5860 -2.8686 22 1 1.3671 -11.2102 -3.7092 23 6 -0.0359 -12.6822 -3.0292 24 7 -0.7223 -13.1399 -2.0064 25 14 -0.1877 -13.5053 -4.6993 26 1 0.6816 -12.8038 -5.6777 27 1 0.2332 -14.9253 -4.5914 28 1 -1.5991 -13.4407 -5.1565 29 6 2.3893 -7.1878 -1.3099 30 6 3.0903 -5.8619 -0.9460 31 1 3.8480 -5.4776 -1.6289 32 1 -0.3634 -0.0007 1.0276 33 1 -0.3633 0.8903 -0.5132 34 1 -0.3634 -0.8896 -0.5145 35 1 2.0137 2.1549 0.0004 36 1 4.4972 1.3252 -0.0003 37 1 3.7499 -3.2868 -0.0015 38 1 3.3790 -7.7537 1.7766 39 1 1.7313 -7.1918 1.3573 40 1 2.2164 -9.9757 0.5893 41 1 0.8720 -8.8861 0.1730 42 1 0.4065 -11.3190 -0.8882 43 1 -1.3074 -13.9054 -2.1184 44 1 2.7365 -7.5488 -2.2780 45 1 1.3071 -7.0582 -1.3191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114200933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:51 Heat of formation + Delta-G solvation = 20.307803 kcal Electronic energy + Delta-G solvation = -27261.543316 eV Core-core repulsion = 23281.000335 eV Total energy + Delta-G solvation = -3980.542981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71202 -40.30880 -38.96689 -37.91522 -35.23575 -33.94729 -33.09878 -32.41715 -31.25116 -30.01546 -28.24989 -27.72727 -27.02050 -24.76149 -23.32892 -21.97900 -21.10867 -20.94290 -20.29625 -19.42586 -19.15627 -18.89745 -17.84034 -16.95213 -16.17513 -15.84976 -15.54866 -15.15105 -14.95258 -14.54153 -14.33465 -14.15221 -14.01258 -13.79489 -13.50877 -13.48991 -13.26813 -12.94653 -12.89904 -12.55380 -12.40058 -12.09587 -11.87694 -11.85302 -11.55945 -11.33865 -11.25096 -11.01802 -10.85808 -10.34627 -10.24332 -10.23985 -10.07540 -9.51671 -9.14890 -9.04753 -8.50100 -8.42195 -8.04955 -7.93916 -6.42900 -3.83729 1.10380 2.36498 2.60096 2.71652 3.00263 3.15908 3.26757 3.33831 3.62582 3.87555 4.04768 4.23329 4.47188 4.56441 4.61393 4.62459 4.81667 4.84416 4.96356 4.98757 5.16453 5.24423 5.33189 5.45741 5.52888 5.58288 5.64238 5.67358 5.71601 5.76451 5.84857 5.91622 6.00988 6.05991 6.12955 6.24611 6.26151 6.37881 6.59712 6.61677 6.94927 7.11167 7.16522 7.22874 7.54578 7.87639 8.04747 8.59830 9.16624 9.52234 10.03509 10.74787 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.001933 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.060526 B =14479.018507 C =14948.771482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.070 4.070 3 C -0.212 4.212 4 C 0.027 3.973 5 N -0.542 5.542 6 H 0.416 0.584 7 C -0.062 4.062 8 C 0.593 3.407 9 O -0.520 6.520 10 N -0.701 5.701 11 C 0.104 3.896 12 H 0.136 0.864 13 C -0.169 4.169 14 H 0.116 0.884 15 C 0.060 3.940 16 N -0.487 5.487 17 C 0.033 3.967 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.561 5.561 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.066 3.934 30 C -0.161 4.161 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.394 0.606 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.393 0.607 43 H 0.271 0.729 44 H 0.122 0.878 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 25.281 8.912 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.237 4.237 4 C -0.109 4.109 5 N -0.138 5.138 6 H 0.253 0.747 7 C -0.174 4.174 8 C 0.381 3.619 9 O -0.395 6.395 10 N -0.350 5.350 11 C -0.002 4.002 12 H 0.154 0.846 13 C -0.189 4.189 14 H 0.134 0.866 15 C -0.069 4.069 16 N -0.211 5.211 17 C -0.098 4.098 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.197 5.197 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.062 4.062 30 C -0.182 4.182 31 H 0.134 0.866 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.161 0.839 36 H 0.189 0.811 37 H 0.228 0.772 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.140 0.860 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.653 24.800 8.188 27.513 hybrid contribution -0.112 -0.493 -0.049 0.508 sum 8.541 24.308 8.140 27.020 Atomic orbital electron populations 1.20375 0.89153 1.03107 1.02349 1.20007 0.96029 0.90720 1.01072 1.20836 0.91818 0.98893 1.12150 1.22025 0.99637 0.82888 1.06315 1.41939 1.07083 1.07345 1.57479 0.74742 1.20163 0.83819 0.93289 1.20147 1.17007 0.85821 0.82842 0.76182 1.90840 1.15906 1.83066 1.49674 1.45152 1.09055 1.05113 1.75653 1.21834 0.98234 0.77399 1.02714 0.84638 1.23795 1.01183 0.96120 0.97834 0.86557 1.22692 0.99608 0.90497 0.94063 1.65413 1.46779 1.06796 1.02120 1.22101 0.94778 0.94597 0.98349 1.19678 0.84259 0.83883 0.89438 1.90446 1.48664 1.65582 1.41939 1.41852 1.38973 1.26668 1.12212 1.19752 1.24353 1.10262 0.88472 0.87804 1.25276 0.96271 0.97190 0.99229 1.69617 1.28202 1.25837 1.30503 0.85793 0.78076 0.78821 0.81613 1.19210 1.20734 1.20751 1.22850 0.97162 0.87378 0.98765 1.24104 1.03331 0.97963 0.92763 0.86599 0.91405 0.91890 0.90000 0.83857 0.81112 0.77242 0.89469 0.93549 0.88953 0.93120 0.77417 0.91882 0.85972 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.83 36.00 0.35 -0.56 16 2 C -0.07 -0.71 6.21 -104.16 -0.65 -1.35 16 3 C -0.21 -1.64 10.76 -39.98 -0.43 -2.07 16 4 C 0.03 0.16 11.89 -16.91 -0.20 -0.05 16 5 N -0.54 -3.39 5.99 -9.39 -0.06 -3.44 16 6 H 0.42 1.30 8.19 -40.82 -0.33 0.97 16 7 C -0.06 -0.62 7.06 -81.98 -0.58 -1.20 16 8 C 0.59 7.09 7.79 -12.86 -0.10 6.99 16 9 O -0.52 -8.07 14.37 5.19 0.07 -7.99 16 10 N -0.70 -6.79 5.56 -55.11 -0.31 -7.10 16 11 C 0.10 1.23 5.98 -67.93 -0.41 0.82 16 12 H 0.14 1.88 7.40 -51.93 -0.38 1.50 16 13 C -0.17 -1.89 7.05 -89.31 -0.63 -2.52 16 14 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.06 0.76 6.30 -2.18 -0.01 0.75 16 16 N -0.49 -8.17 5.33 -231.44 -1.23 -9.40 16 17 C 0.03 0.60 5.55 -4.98 -0.03 0.57 16 18 C 0.44 10.39 7.50 -10.99 -0.08 10.31 16 19 O -0.58 -15.37 13.24 5.54 0.07 -15.30 16 20 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.47 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 25 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.07 1.12 5.12 -2.20 -0.01 1.10 16 30 C -0.16 -2.09 7.04 -89.33 -0.63 -2.71 16 31 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.97 6.49 -51.93 -0.34 0.63 16 35 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.17 0.37 8.06 -52.48 -0.42 -0.05 16 37 H 0.39 2.53 7.96 -40.82 -0.32 2.20 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.58 7.82 -51.93 -0.41 0.18 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 42 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.12 2.47 6.05 -51.93 -0.31 2.16 16 45 H 0.04 0.73 7.99 -51.93 -0.42 0.32 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -34.20 375.03 -9.94 -44.13 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.14 Total: 13.34 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -3.64 Total: 2.14 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.93 Total: -58.05 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.15 Total: -23.29 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.20 -9.94 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114200933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.441 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds