Wall clock time and date at job start Tue Mar 31 2020 16:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40398 * 120.21884 * 2 1 4 4 C 1.35029 * 120.44244 * 180.02562 * 3 2 1 5 5 N 1.36530 * 120.59575 * 0.03755 * 4 3 2 6 6 C 1.36254 * 132.78388 * 179.97438 * 5 4 3 7 7 N 1.30179 * 109.82130 * 179.97438 * 6 5 4 8 8 C 1.34888 * 109.73691 * 359.75109 * 7 6 5 9 9 C 1.46288 * 126.49670 * 180.29886 * 8 7 6 10 10 O 1.21776 * 119.99505 * 174.50624 * 9 8 7 11 11 N 1.34772 * 120.00333 * 354.50721 * 9 8 7 12 12 C 1.46504 * 119.99627 * 4.32769 * 11 9 8 13 13 C 1.52997 * 109.47276 * 83.57478 * 12 11 9 14 14 O 1.42896 * 109.47168 * 64.99685 * 13 12 11 15 15 C 1.46495 * 120.00217 * 184.32960 * 11 9 8 16 16 C 1.52995 * 109.47564 * 89.99827 * 15 11 9 17 17 N 1.46495 * 109.47564 * 179.97438 * 16 15 11 18 18 C 1.36931 * 120.00323 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00419 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00363 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99711 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47201 * 89.99925 * 22 20 18 24 24 H 1.48500 * 109.47228 * 209.99622 * 22 20 18 25 25 H 1.48494 * 109.47169 * 330.00155 * 22 20 18 26 26 C 1.37268 * 120.03600 * 359.96427 * 5 4 3 27 27 C 1.36333 * 120.22322 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47385 * 269.97493 * 1 2 3 29 29 H 1.08994 * 109.47478 * 29.98323 * 1 2 3 30 30 H 1.09010 * 109.47126 * 149.98003 * 1 2 3 31 31 H 1.07996 * 119.78085 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.70035 * 180.02562 * 4 3 2 33 33 H 1.07996 * 125.08590 * 0.02562 * 6 5 4 34 34 H 1.09006 * 109.46652 * 203.57429 * 12 11 9 35 35 H 1.08996 * 109.47299 * 323.56580 * 12 11 9 36 36 H 1.09006 * 109.47164 * 184.99927 * 13 12 11 37 37 H 1.09000 * 109.47104 * 304.99681 * 13 12 11 38 38 H 0.96700 * 113.99728 * 180.02562 * 14 13 12 39 39 H 1.09002 * 109.47276 * 210.00144 * 15 11 9 40 40 H 1.08997 * 109.46968 * 329.99565 * 15 11 9 41 41 H 1.09002 * 109.47083 * 300.00435 * 16 15 11 42 42 H 1.08997 * 109.47193 * 59.99875 * 16 15 11 43 43 H 0.97000 * 119.99785 * 0.02562 * 17 16 15 44 44 H 0.97000 * 119.99771 * 180.02562 * 21 20 18 45 45 H 1.07994 * 120.40376 * 359.96240 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2136 1.2132 0.0000 4 6 3.5638 1.2185 -0.0005 5 7 4.2633 0.0460 -0.0018 6 6 5.5963 -0.2365 -0.0030 7 7 5.7742 -1.5261 -0.0035 8 6 4.5788 -2.1509 0.0029 9 6 4.3524 -3.5961 0.0108 10 8 3.2213 -4.0346 0.1171 11 7 5.3956 -4.4423 -0.0996 12 6 6.7634 -3.9184 -0.1319 13 6 7.2537 -3.6839 1.2983 14 8 7.3442 -4.9354 1.9820 15 6 5.1618 -5.8858 -0.1872 16 6 5.0085 -6.2895 -1.6549 17 7 4.7754 -7.7331 -1.7426 18 6 4.6066 -8.3265 -2.9651 19 1 4.6458 -7.7303 -3.8648 20 6 4.3851 -9.6943 -3.0482 21 7 4.2234 -10.2647 -4.2233 22 14 4.3166 -10.7255 -1.4921 23 1 2.9181 -10.7803 -0.9957 24 1 4.7909 -12.1011 -1.7886 25 1 5.1863 -10.1148 -0.4549 26 6 3.5948 -1.1529 -0.0019 27 6 2.1932 -1.1780 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3634 -0.8899 -0.5142 31 1 1.6736 2.1485 0.0004 32 1 4.0953 2.1586 -0.0001 33 1 6.3867 0.4993 -0.0028 34 1 7.4163 -4.6376 -0.6265 35 1 6.7789 -2.9766 -0.6804 36 1 8.2359 -3.2118 1.2729 37 1 6.5518 -3.0342 1.8211 38 1 7.6493 -4.8626 2.8967 39 1 6.0069 -6.4179 0.2497 40 1 4.2520 -6.1401 0.3565 41 1 4.1635 -5.7574 -2.0918 42 1 5.9183 -6.0352 -2.1986 43 1 4.7398 -8.2686 -0.9346 44 1 4.0683 -11.2205 -4.2812 45 1 1.6635 -2.1191 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272202849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:24 Heat of formation + Delta-G solvation = 34.598700 kcal Electronic energy + Delta-G solvation = -28454.398327 eV Core-core repulsion = 24474.475046 eV Total energy + Delta-G solvation = -3979.923281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.16646 -39.58574 -38.09462 -36.98219 -35.54146 -34.49566 -34.10593 -31.57320 -31.48110 -30.11656 -29.36808 -28.01671 -26.76516 -24.42091 -23.66196 -23.05644 -22.45905 -22.00522 -21.08206 -19.36647 -18.11025 -17.44590 -17.39683 -16.94422 -16.58206 -16.29950 -16.03901 -15.53981 -14.96491 -14.77753 -14.54404 -14.30805 -14.17074 -13.88120 -13.62478 -13.53144 -13.41378 -12.91943 -12.83067 -12.58838 -12.50576 -12.27853 -12.09298 -11.92053 -11.48482 -11.28350 -10.97935 -10.91345 -10.69165 -10.56209 -10.37691 -10.04116 -9.98751 -9.74958 -9.65737 -9.47895 -8.76420 -8.35921 -7.75895 -7.10415 -5.65044 -2.99876 0.29906 0.74776 2.13657 2.16654 2.89876 3.21442 3.49463 3.53427 3.55687 3.60700 3.96324 4.08434 4.24992 4.30576 4.38191 4.47268 4.69955 4.71501 4.86861 5.04552 5.20651 5.22961 5.29516 5.32061 5.36471 5.46439 5.58965 5.62192 5.65018 5.68276 5.72608 5.91225 5.93841 5.97997 6.00409 6.18189 6.24270 6.26322 6.67033 6.78011 6.85104 7.03876 7.33189 7.62409 7.75340 8.11571 8.44149 8.53910 9.33362 10.05848 10.26424 11.53572 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.003056 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.370851 B = 9159.715818 C =10498.307199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.127 4.127 4 C 0.050 3.950 5 N -0.367 5.367 6 C 0.139 3.861 7 N -0.418 5.418 8 C -0.055 4.055 9 C 0.599 3.401 10 O -0.541 6.541 11 N -0.584 5.584 12 C 0.105 3.895 13 C 0.071 3.929 14 O -0.570 6.570 15 C 0.110 3.890 16 C 0.147 3.853 17 N -0.753 5.753 18 C -0.238 4.238 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.937 5.937 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.083 3.917 27 C -0.072 4.072 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.216 0.784 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.372 0.628 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.361 0.639 44 H 0.258 0.742 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 31.369 14.150 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.071 4.071 5 N -0.038 5.038 6 C -0.137 4.137 7 N -0.133 5.133 8 C -0.189 4.189 9 C 0.387 3.613 10 O -0.418 6.418 11 N -0.315 5.315 12 C -0.019 4.019 13 C -0.008 4.008 14 O -0.375 6.375 15 C -0.013 4.013 16 C 0.018 3.982 17 N -0.399 5.399 18 C -0.368 4.368 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.586 5.586 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.202 1.202 26 C -0.030 4.030 27 C -0.091 4.091 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.187 0.813 33 H 0.233 0.767 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.218 0.782 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.194 0.806 44 H 0.068 0.932 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.161 30.523 13.364 33.341 hybrid contribution -0.303 0.060 1.510 1.541 sum 0.858 30.583 14.874 34.019 Atomic orbital electron populations 1.20790 0.89608 1.03613 1.02949 1.19970 0.97325 0.92085 0.99212 1.20839 0.92337 0.99390 1.02190 1.21649 0.93053 0.88545 1.03884 1.42990 1.08564 1.06329 1.45924 1.25139 0.82442 0.94396 1.11700 1.70191 1.25300 1.03743 1.14087 1.20511 0.87444 0.93641 1.17267 1.16554 0.84658 0.83252 0.76824 1.90825 1.22249 1.77541 1.51185 1.47480 1.05894 1.06844 1.71234 1.22060 0.82178 1.02070 0.95548 1.22559 0.99007 0.85234 0.93965 1.86572 1.90579 1.31154 1.29180 1.21716 1.02970 0.78310 0.98283 1.20909 0.98344 0.85690 0.93218 1.42560 1.88735 1.02920 1.05688 1.19052 1.40894 0.91758 0.85104 0.89298 1.24657 1.01999 0.96386 0.96281 1.69710 1.56375 1.10510 1.21967 0.86518 0.77979 0.80065 0.83892 1.21031 1.21802 1.20157 1.19240 0.93226 0.85001 1.05490 1.20722 0.89777 1.00164 0.98451 0.90534 0.91065 0.90577 0.83165 0.81319 0.76747 0.90074 0.86019 0.93194 0.93686 0.78222 0.89812 0.90020 0.95316 0.95661 0.80629 0.93160 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.03 36.00 0.36 -0.30 16 2 C -0.08 -0.67 5.89 -104.50 -0.62 -1.28 16 3 C -0.13 -0.72 9.67 -39.91 -0.39 -1.10 16 4 C 0.05 0.28 10.95 -16.60 -0.18 0.10 16 5 N -0.37 -3.31 2.94 -62.19 -0.18 -3.50 16 6 C 0.14 1.16 12.73 -89.52 -1.14 0.03 16 7 N -0.42 -4.87 6.61 -10.53 -0.07 -4.94 16 8 C -0.05 -0.79 6.54 -82.57 -0.54 -1.33 16 9 C 0.60 10.59 7.58 -13.03 -0.10 10.49 16 10 O -0.54 -11.04 15.33 5.12 0.08 -10.96 16 11 N -0.58 -9.91 2.44 -175.37 -0.43 -10.33 16 12 C 0.10 1.45 5.37 -4.04 -0.02 1.42 16 13 C 0.07 0.84 6.80 37.16 0.25 1.09 16 14 O -0.57 -7.31 13.28 -35.23 -0.47 -7.78 16 15 C 0.11 2.12 5.52 -4.05 -0.02 2.10 16 16 C 0.15 3.32 6.58 -4.05 -0.03 3.29 16 17 N -0.75 -19.90 5.41 -59.92 -0.32 -20.23 16 18 C -0.24 -7.28 10.47 -15.06 -0.16 -7.44 16 19 H 0.09 2.89 8.06 -52.48 -0.42 2.47 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 21 N -0.94 -30.84 13.97 55.49 0.78 -30.07 16 22 Si 0.89 23.45 27.74 -169.99 -4.71 18.73 16 23 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 26 C 0.08 1.04 6.72 -83.98 -0.56 0.48 16 27 C -0.07 -0.82 9.39 -39.54 -0.37 -1.19 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 30 H 0.08 0.49 8.09 -51.92 -0.42 0.07 16 31 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 32 H 0.17 0.27 8.06 -52.49 -0.42 -0.16 16 33 H 0.22 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.08 1.14 8.02 -51.93 -0.42 0.73 16 35 H 0.12 1.58 5.26 -51.93 -0.27 1.31 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.56 7.26 -51.93 -0.38 0.18 16 38 H 0.37 3.05 9.12 45.56 0.42 3.46 16 39 H 0.08 1.58 7.75 -51.93 -0.40 1.17 16 40 H 0.08 1.68 7.36 -51.93 -0.38 1.29 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.36 9.25 5.53 -40.82 -0.23 9.02 16 44 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 45 H 0.16 2.05 7.19 -52.49 -0.38 1.67 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -39.74 374.97 -8.72 -48.46 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.43 Total: 8.65 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -3.61 Total: 6.32 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -0.23 Total: -69.07 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.39 Total: -18.74 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.71 Total: 18.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.74 -8.72 -48.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272202849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.062 kcal (2) G-P(sol) polarization free energy of solvation -39.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds