Wall clock time and date at job start Tue Mar 31 2020 16:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40573 * 120.12817 * 2 1 4 4 C 1.34851 * 120.33970 * 180.02562 * 3 2 1 5 5 N 1.36676 * 120.64133 * 0.02562 * 4 3 2 6 6 C 1.36191 * 132.29707 * 179.97438 * 5 4 3 7 7 C 1.36574 * 107.09533 * 180.02562 * 6 5 4 8 8 C 1.47595 * 125.91609 * 180.02562 * 7 6 5 9 9 O 1.21583 * 120.00515 * 353.46672 * 8 7 6 10 10 N 1.34781 * 119.99575 * 173.74815 * 8 7 6 11 11 C 1.46503 * 120.00130 * 3.18881 * 10 8 7 12 12 C 1.46499 * 119.99914 * 183.18495 * 10 8 7 13 13 C 1.52999 * 109.47113 * 89.99631 * 12 10 8 14 14 H 1.09008 * 109.46793 * 60.00623 * 13 12 10 15 15 O 1.42898 * 109.47623 * 300.00173 * 13 12 10 16 16 C 1.53000 * 109.47069 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.47082 * 185.00522 * 16 13 12 18 18 C 1.36931 * 120.00120 * 180.02562 * 17 16 13 19 19 H 1.08007 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00019 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99843 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00196 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47482 * 90.00183 * 22 20 18 24 24 H 1.48500 * 109.47229 * 210.00428 * 22 20 18 25 25 H 1.48503 * 109.47069 * 329.99983 * 22 20 18 26 26 N 1.34580 * 108.16474 * 0.26082 * 7 6 5 27 27 C 1.32231 * 109.02015 * 359.56524 * 26 7 6 28 28 C 1.35888 * 120.13729 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.46854 * 269.97157 * 1 2 3 30 30 H 1.08995 * 109.47282 * 29.97791 * 1 2 3 31 31 H 1.08998 * 109.46855 * 149.97606 * 1 2 3 32 32 H 1.08003 * 119.83144 * 0.05167 * 3 2 1 33 33 H 1.08000 * 119.68021 * 180.02562 * 4 3 2 34 34 H 1.08001 * 126.45385 * 359.96423 * 6 5 4 35 35 H 1.08997 * 109.47208 * 84.09770 * 11 10 8 36 36 H 1.09004 * 109.46531 * 204.09645 * 11 10 8 37 37 H 1.09003 * 109.46688 * 324.09167 * 11 10 8 38 38 H 1.08993 * 109.47511 * 210.00294 * 12 10 8 39 39 H 1.09007 * 109.47245 * 329.99982 * 12 10 8 40 40 H 0.96695 * 113.99981 * 300.00087 * 15 13 12 41 41 H 1.09003 * 109.47223 * 304.99696 * 16 13 12 42 42 H 1.09000 * 109.47383 * 65.00232 * 16 13 12 43 43 H 0.97000 * 119.99317 * 359.97438 * 17 16 13 44 44 H 0.97000 * 119.99646 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.33016 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2158 0.0000 4 6 3.5611 1.2208 -0.0005 5 7 4.2621 0.0475 -0.0016 6 6 5.5969 -0.2228 -0.0027 7 6 5.7314 -1.5819 -0.0040 8 6 7.0062 -2.3258 -0.0050 9 8 8.0585 -1.7286 -0.1245 10 7 7.0033 -3.6677 0.1209 11 6 5.7331 -4.3944 0.1884 12 6 8.2706 -4.3995 0.1901 13 6 8.7111 -4.5195 1.6503 14 1 7.9500 -5.0566 2.2165 15 8 8.8843 -3.2138 2.2046 16 6 10.0349 -5.2833 1.7226 17 7 10.3963 -5.5025 3.1253 18 6 11.5503 -6.1696 3.4388 19 1 12.1939 -6.5346 2.6520 20 6 11.8924 -6.3777 4.7679 21 7 13.0015 -7.0194 5.0692 22 14 10.7791 -5.7471 6.1288 23 1 9.7849 -6.7929 6.4795 24 1 11.5960 -5.4197 7.3249 25 1 10.0712 -4.5272 5.6638 26 7 4.5002 -2.1253 -0.0095 27 6 3.6011 -1.1557 -0.0022 28 6 2.1893 -1.1752 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6720 2.1508 0.0008 33 1 4.0924 2.1611 -0.0001 34 1 6.3982 0.5013 -0.0036 35 1 5.3659 -4.5789 -0.8211 36 1 5.8853 -5.3453 0.6991 37 1 5.0031 -3.7998 0.7376 38 1 8.1386 -5.3954 -0.2327 39 1 9.0317 -3.8625 -0.3761 40 1 9.5483 -2.6782 1.7493 41 1 9.9274 -6.2449 1.2206 42 1 10.8165 -4.7028 1.2324 43 1 9.8184 -5.1743 3.8319 44 1 13.2407 -7.1645 5.9980 45 1 1.6570 -2.1149 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284430876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:43 Heat of formation + Delta-G solvation = 34.480883 kcal Electronic energy + Delta-G solvation = -27824.532392 eV Core-core repulsion = 23844.604002 eV Total energy + Delta-G solvation = -3979.928390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.24109 -39.86394 -38.10192 -37.20731 -35.32134 -34.57989 -34.05785 -31.47648 -31.20674 -30.51395 -29.58222 -27.55293 -26.81879 -25.83750 -24.13735 -23.03815 -22.16933 -21.84882 -21.15497 -19.44891 -18.34153 -17.63924 -17.23313 -16.89793 -16.53228 -16.29884 -15.72962 -15.46385 -15.15774 -14.99126 -14.75024 -14.43203 -14.34209 -14.03286 -13.66552 -13.33109 -13.21201 -13.07767 -12.86047 -12.66474 -12.53698 -12.35739 -12.15670 -12.10259 -11.95746 -11.49252 -11.17312 -11.12056 -10.80517 -10.75234 -10.39324 -10.12206 -10.02420 -9.65427 -9.49873 -9.27140 -8.84961 -8.48089 -8.21203 -7.16649 -5.70938 -3.05836 0.19435 0.77626 1.82304 2.07067 2.91874 2.97803 3.42875 3.45568 3.52362 3.54239 3.63330 3.95117 4.19212 4.22677 4.54382 4.62689 4.67238 4.77141 4.86559 4.97561 5.01958 5.03241 5.06866 5.21359 5.27837 5.31868 5.39072 5.53192 5.55628 5.61459 5.67948 5.75799 5.77133 5.83608 5.91381 5.97783 6.03642 6.21802 6.48125 6.52271 6.63659 6.71862 7.25085 7.42750 8.03660 8.14454 8.19214 8.48179 9.28270 10.00838 10.21497 11.47285 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.002264 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.504703 B =12366.107144 C =12693.909328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.136 4.136 4 C 0.060 3.940 5 N -0.367 5.367 6 C -0.018 4.018 7 C 0.016 3.984 8 C 0.604 3.396 9 O -0.535 6.535 10 N -0.592 5.592 11 C 0.075 3.925 12 C 0.084 3.916 13 C 0.082 3.918 14 H 0.096 0.904 15 O -0.552 6.552 16 C 0.130 3.870 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 N -0.462 5.462 27 C 0.226 3.774 28 C -0.081 4.081 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.196 0.804 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.376 0.624 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.309 17.897 -15.209 37.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.157 4.157 4 C -0.061 4.061 5 N -0.039 5.039 6 C -0.153 4.153 7 C -0.116 4.116 8 C 0.391 3.609 9 O -0.412 6.412 10 N -0.323 5.323 11 C -0.068 4.068 12 C -0.039 4.039 13 C 0.021 3.979 14 H 0.113 0.887 15 O -0.358 6.358 16 C 0.002 3.998 17 N -0.395 5.395 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.198 1.198 26 N -0.184 5.184 27 C -0.019 4.019 28 C -0.101 4.101 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.213 0.787 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.224 0.776 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.199 0.801 44 H 0.069 0.931 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.066 17.027 -14.908 36.838 hybrid contribution -0.052 1.318 0.713 1.499 sum -29.118 18.345 -14.196 37.228 Atomic orbital electron populations 1.20784 0.89508 1.03505 1.03045 1.19777 0.97149 0.91997 0.98639 1.20767 0.92075 0.99418 1.03442 1.21683 0.93061 0.88733 1.02591 1.42766 1.07197 1.07825 1.46063 1.22607 0.83466 0.97893 1.11336 1.20625 0.92577 0.91003 1.07443 1.16811 0.86007 0.81633 0.76433 1.90762 1.31389 1.68281 1.50764 1.47467 1.07750 1.05759 1.71296 1.22208 0.85198 0.97168 1.02255 1.22290 0.85879 0.97333 0.98386 1.22559 0.97926 0.84885 0.92508 0.88655 1.86518 1.63577 1.25764 1.59906 1.21222 0.93202 0.97208 0.88167 1.42597 1.26615 1.69176 1.01152 1.19061 0.97673 1.27468 0.93151 0.89286 1.24661 0.97266 1.00418 0.96845 1.69713 1.24394 1.46517 1.17688 0.86540 0.80483 0.79109 0.82539 1.21165 1.21795 1.19819 1.71051 0.97958 1.27784 1.21605 1.21106 0.94500 0.80347 1.05939 1.20153 0.87941 0.99750 1.02305 0.90427 0.90942 0.90831 0.83019 0.81584 0.78726 0.92791 0.91761 0.87965 0.89239 0.89140 0.77620 0.94791 0.95185 0.80144 0.93122 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.29 10.02 36.01 0.36 0.07 16 2 C -0.07 -0.37 5.88 -104.58 -0.62 -0.98 16 3 C -0.14 -0.60 9.67 -39.90 -0.39 -0.99 16 4 C 0.06 0.35 10.93 -16.59 -0.18 0.17 16 5 N -0.37 -3.47 2.93 -62.37 -0.18 -3.65 16 6 C -0.02 -0.20 11.47 -16.22 -0.19 -0.39 16 7 C 0.02 0.22 6.64 -83.45 -0.55 -0.34 16 8 C 0.60 9.22 7.13 -12.44 -0.09 9.13 16 9 O -0.54 -9.18 15.47 1.38 0.02 -9.15 16 10 N -0.59 -8.24 2.83 -182.78 -0.52 -8.75 16 11 C 0.07 0.87 9.59 59.85 0.57 1.44 16 12 C 0.08 1.17 5.14 -4.04 -0.02 1.15 16 13 C 0.08 1.38 3.27 -26.73 -0.09 1.29 16 14 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 15 O -0.55 -10.37 12.17 -39.14 -0.48 -10.85 16 16 C 0.13 2.60 5.90 -4.04 -0.02 2.57 16 17 N -0.75 -18.91 5.35 -59.90 -0.32 -19.23 16 18 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 19 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.94 -30.28 13.97 55.49 0.78 -29.51 16 22 Si 0.88 23.34 27.74 -169.99 -4.71 18.62 16 23 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.27 -7.02 6.52 56.52 0.37 -6.65 16 26 N -0.46 -5.79 7.79 -9.35 -0.07 -5.87 16 27 C 0.23 2.39 7.79 -156.04 -1.22 1.17 16 28 C -0.08 -0.60 9.75 -39.30 -0.38 -0.99 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.10 8.09 -51.93 -0.42 -0.32 16 31 H 0.07 0.16 8.08 -51.93 -0.42 -0.26 16 32 H 0.15 0.21 8.06 -52.48 -0.42 -0.21 16 33 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.20 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 37 H 0.10 1.28 5.32 -51.93 -0.28 1.00 16 38 H 0.09 1.03 8.07 -51.93 -0.42 0.62 16 39 H 0.09 1.29 7.38 -51.92 -0.38 0.90 16 40 H 0.38 6.55 8.56 45.56 0.39 6.94 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.37 9.30 5.53 -40.82 -0.23 9.07 16 44 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 45 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -37.95 376.49 -8.44 -46.40 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.57 Total: 10.35 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.06 Total: 5.97 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.32 Total: -67.01 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.45 Total: -20.01 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.71 Total: 18.62 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.95 -8.44 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284430876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.877 kcal (2) G-P(sol) polarization free energy of solvation -37.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds