Wall clock time and date at job start Tue Mar 31 2020 16:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40568 * 120.13436 * 2 1 4 4 C 1.34847 * 120.34609 * 180.02562 * 3 2 1 5 5 N 1.36680 * 120.63709 * 0.02740 * 4 3 2 6 6 C 1.36196 * 132.29178 * 179.97438 * 5 4 3 7 7 C 1.36582 * 107.09416 * 180.02562 * 6 5 4 8 8 C 1.47590 * 125.91776 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00191 * 5.93675 * 8 7 6 10 10 N 1.34780 * 119.99252 * 185.93845 * 8 7 6 11 11 C 1.46499 * 120.00528 * 356.06665 * 10 8 7 12 12 C 1.46509 * 119.99486 * 176.06800 * 10 8 7 13 13 C 1.52995 * 109.47234 * 89.99832 * 12 10 8 14 14 H 1.09006 * 109.47183 * 305.00346 * 13 12 10 15 15 O 1.42898 * 109.47128 * 64.99952 * 13 12 10 16 16 C 1.52998 * 109.47141 * 184.99807 * 13 12 10 17 17 N 1.46500 * 109.46946 * 179.97438 * 16 13 12 18 18 C 1.36938 * 119.99649 * 179.72554 * 17 16 13 19 19 H 1.07997 * 120.00254 * 0.27794 * 18 17 16 20 20 C 1.38816 * 119.99664 * 180.27839 * 18 17 16 21 21 N 1.31622 * 119.99896 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00268 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47075 * 89.99682 * 22 20 18 24 24 H 1.48502 * 109.47010 * 209.99902 * 22 20 18 25 25 H 1.48504 * 109.46871 * 329.99601 * 22 20 18 26 26 N 1.34579 * 108.15904 * 0.22743 * 7 6 5 27 27 C 1.32235 * 109.02844 * 359.62287 * 26 7 6 28 28 C 1.35890 * 120.13708 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46945 * 269.97706 * 1 2 3 30 30 H 1.08996 * 109.47706 * 29.97902 * 1 2 3 31 31 H 1.09008 * 109.46954 * 149.98108 * 1 2 3 32 32 H 1.08002 * 119.82798 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.68187 * 180.02562 * 4 3 2 34 34 H 1.07998 * 126.45479 * 359.97438 * 6 5 4 35 35 H 1.08991 * 109.46993 * 275.71827 * 11 10 8 36 36 H 1.09002 * 109.46901 * 35.71903 * 11 10 8 37 37 H 1.08997 * 109.47030 * 155.71689 * 11 10 8 38 38 H 1.09003 * 109.46936 * 329.99772 * 12 10 8 39 39 H 1.08999 * 109.46911 * 210.00313 * 12 10 8 40 40 H 0.96705 * 113.99912 * 59.99563 * 15 13 12 41 41 H 1.08998 * 109.46979 * 60.00587 * 16 13 12 42 42 H 1.08992 * 109.47461 * 300.00292 * 16 13 12 43 43 H 0.96998 * 120.00117 * 0.02562 * 17 16 13 44 44 H 0.97001 * 119.99973 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.32808 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5611 1.2207 -0.0005 5 7 4.2620 0.0473 -0.0016 6 6 5.5969 -0.2229 -0.0028 7 6 5.7314 -1.5821 -0.0041 8 6 7.0061 -2.3260 -0.0062 9 8 8.0592 -1.7280 0.1020 10 7 7.0027 -3.6683 -0.1281 11 6 5.7323 -4.3967 -0.1719 12 6 8.2695 -4.3989 -0.2169 13 6 8.7358 -4.7837 1.1885 14 1 8.7921 -3.8901 1.8101 15 8 7.8072 -5.7056 1.7628 16 6 10.1174 -5.4360 1.1066 17 7 10.5642 -5.8039 2.4525 18 6 11.7785 -6.4119 2.6284 19 1 12.4088 -6.6160 1.7755 20 6 12.1994 -6.7657 3.9030 21 7 13.3663 -7.3506 4.0720 22 14 11.1089 -6.4132 5.3781 23 1 10.2143 -7.5734 5.6209 24 1 11.9559 -6.1821 6.5758 25 1 10.2897 -5.2039 5.1103 26 7 4.5001 -2.1254 -0.0088 27 6 3.6010 -1.1558 -0.0023 28 6 2.1892 -1.1752 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6720 2.1507 0.0004 33 1 4.0925 2.1609 -0.0001 34 1 6.3982 0.5011 -0.0034 35 1 5.3844 -4.5815 0.8443 36 1 4.9914 -3.8031 -0.7074 37 1 5.8762 -5.3474 -0.6852 38 1 9.0214 -3.7664 -0.6888 39 1 8.1278 -5.3007 -0.8124 40 1 7.7061 -6.5261 1.2610 41 1 10.8258 -4.7328 0.6687 42 1 10.0611 -6.3295 0.4851 43 1 9.9980 -5.6208 3.2185 44 1 13.6603 -7.5982 4.9627 45 1 1.6568 -2.1149 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284430877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:46 Heat of formation + Delta-G solvation = 35.174128 kcal Electronic energy + Delta-G solvation = -27707.899728 eV Core-core repulsion = 23728.001400 eV Total energy + Delta-G solvation = -3979.898329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.26449 -39.88668 -38.12445 -37.37440 -35.29113 -34.59154 -34.05251 -31.52495 -31.21343 -30.53409 -29.64460 -27.58046 -26.69070 -25.89448 -24.14302 -23.03639 -22.17939 -21.93858 -21.18434 -19.46886 -18.34491 -17.63837 -17.25353 -16.89923 -16.55552 -16.31498 -15.77935 -15.52448 -15.12705 -14.96569 -14.81433 -14.45236 -14.35615 -14.04732 -13.73322 -13.36343 -13.23963 -13.08942 -12.78686 -12.69557 -12.56492 -12.34868 -12.16058 -12.08116 -11.98777 -11.51646 -11.14575 -11.13710 -10.79115 -10.72211 -10.45710 -10.14228 -10.01264 -9.75030 -9.50738 -9.29815 -8.83756 -8.48150 -8.22348 -7.15213 -5.69853 -3.04548 0.17459 0.75357 1.78169 2.04749 2.89888 2.96797 3.35846 3.47750 3.53667 3.54793 3.61641 3.93733 4.17881 4.20844 4.52941 4.61328 4.68281 4.71844 4.80873 4.94441 5.02119 5.02652 5.05820 5.17390 5.20005 5.34452 5.37987 5.51456 5.58743 5.63918 5.71437 5.76667 5.78486 5.93228 5.95307 5.97710 5.98948 6.22766 6.46757 6.55251 6.62423 6.73859 7.22540 7.40345 7.98609 8.08649 8.13043 8.49332 9.29736 10.02344 10.23206 11.48377 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022531 B = 0.002196 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.436262 B =12744.783082 C =12896.726104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 C -0.136 4.136 4 C 0.060 3.940 5 N -0.366 5.366 6 C -0.019 4.019 7 C 0.015 3.985 8 C 0.594 3.406 9 O -0.535 6.535 10 N -0.589 5.589 11 C 0.077 3.923 12 C 0.088 3.912 13 C 0.082 3.918 14 H 0.100 0.900 15 O -0.554 6.554 16 C 0.131 3.869 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.276 1.276 26 N -0.460 5.460 27 C 0.226 3.774 28 C -0.081 4.081 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.196 0.804 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.369 0.631 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.366 0.634 44 H 0.259 0.741 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.769 18.498 -13.717 38.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.156 4.156 4 C -0.061 4.061 5 N -0.038 5.038 6 C -0.154 4.154 7 C -0.118 4.118 8 C 0.381 3.619 9 O -0.412 6.412 10 N -0.320 5.320 11 C -0.065 4.065 12 C -0.036 4.036 13 C 0.022 3.978 14 H 0.118 0.882 15 O -0.358 6.358 16 C 0.002 3.998 17 N -0.395 5.395 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.202 1.202 26 N -0.182 5.182 27 C -0.018 4.018 28 C -0.101 4.101 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.213 0.787 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.215 0.785 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.200 0.800 44 H 0.069 0.931 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -30.112 18.343 -13.280 37.677 hybrid contribution -0.326 0.616 0.778 1.044 sum -30.438 18.959 -12.502 37.976 Atomic orbital electron populations 1.20786 0.89489 1.03521 1.03060 1.19779 0.97165 0.91987 0.98612 1.20770 0.92072 0.99432 1.03367 1.21684 0.93063 0.88719 1.02646 1.42774 1.07177 1.07846 1.46043 1.22612 0.83508 0.97864 1.11397 1.20600 0.92548 0.90979 1.07624 1.16955 0.86159 0.81797 0.77019 1.90830 1.31277 1.68543 1.50516 1.47518 1.08076 1.05431 1.70972 1.22242 0.84849 0.96471 1.02979 1.22289 0.85829 0.97133 0.98320 1.22603 0.88850 0.93025 0.93357 0.88189 1.86593 1.63789 1.30934 1.54486 1.21198 0.92431 0.97006 0.89126 1.42582 1.20690 1.73782 1.02491 1.19062 0.93306 1.30403 0.94565 0.89289 1.24661 0.96793 1.00637 0.97112 1.69712 1.20061 1.46737 1.21819 0.86498 0.80113 0.78321 0.83361 1.21056 1.21856 1.20233 1.71048 0.97915 1.27681 1.21519 1.21125 0.94520 0.80322 1.05878 1.20160 0.87930 0.99777 1.02249 0.90420 0.90933 0.90809 0.83004 0.81573 0.78695 0.92173 0.88064 0.92142 0.88702 0.89752 0.78454 0.94619 0.95347 0.80043 0.93129 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.27 10.02 36.00 0.36 0.09 16 2 C -0.07 -0.35 5.88 -104.59 -0.62 -0.97 16 3 C -0.14 -0.58 9.67 -39.91 -0.39 -0.96 16 4 C 0.06 0.34 10.93 -16.59 -0.18 0.16 16 5 N -0.37 -3.40 2.93 -62.37 -0.18 -3.58 16 6 C -0.02 -0.21 11.47 -16.21 -0.19 -0.39 16 7 C 0.01 0.20 6.65 -83.45 -0.55 -0.35 16 8 C 0.59 9.22 7.67 -12.44 -0.10 9.12 16 9 O -0.53 -9.69 16.49 5.29 0.09 -9.60 16 10 N -0.59 -8.24 2.84 -182.79 -0.52 -8.76 16 11 C 0.08 0.90 9.28 59.85 0.56 1.46 16 12 C 0.09 1.21 5.07 -4.04 -0.02 1.19 16 13 C 0.08 1.41 3.30 -26.73 -0.09 1.32 16 14 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 15 O -0.55 -9.33 12.64 -35.23 -0.45 -9.78 16 16 C 0.13 2.64 5.92 -4.04 -0.02 2.62 16 17 N -0.75 -19.13 5.30 -59.91 -0.32 -19.45 16 18 C -0.24 -7.25 10.47 -15.06 -0.16 -7.41 16 19 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 21 N -0.94 -30.42 13.97 55.49 0.78 -29.64 16 22 Si 0.89 23.67 27.74 -169.99 -4.71 18.95 16 23 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.28 -7.18 6.52 56.52 0.37 -6.81 16 26 N -0.46 -5.73 7.76 -9.35 -0.07 -5.80 16 27 C 0.23 2.36 7.80 -156.04 -1.22 1.14 16 28 C -0.08 -0.59 9.75 -39.30 -0.38 -0.97 16 29 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.07 0.09 8.09 -51.93 -0.42 -0.33 16 31 H 0.07 0.15 8.08 -51.92 -0.42 -0.27 16 32 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.18 5.23 -51.93 -0.27 0.90 16 37 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 38 H 0.09 1.37 7.48 -51.93 -0.39 0.99 16 39 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 40 H 0.37 4.89 9.05 45.56 0.41 5.30 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.37 9.48 5.41 -40.82 -0.22 9.26 16 44 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 45 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -38.74 378.11 -8.30 -47.03 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.52 Total: 8.88 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -3.09 Total: 6.05 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.32 Total: -67.24 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.36 Total: -19.38 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.71 Total: 18.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.74 -8.30 -47.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284430877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.208 kcal (2) G-P(sol) polarization free energy of solvation -38.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds